mRNA_E-fasciculatus_F_contig154.3784.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig154.3784.1
Unique NamemRNA_E-fasciculatus_F_contig154.3784.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig154.3784.1 vs. uniprot
Match: A0A6H5KEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.710e-36
Identity = 127/221 (57.47%), Postives = 134/221 (60.63%), Query Frame = -2 
Query:    2 YRDDGRGDGFKDDCSGXXXXXXXXXXXXXXXXXXXXXSRSMPPAEEASGFTRAGTKPPGAAVLKSFGRAPAPXXXXXXXXXXXXXXXXXXXXXXXXXSLPFPVFVDANPPPSAGKPRNRGRXXXXXXXXXXXXXXXXXXXXXXXXXX--VVSPSSRRRGGELSILEDSYEWDPTAPSHLSSYNVYDDSPVRRFDXXXXXGAR---RSGSPAAVPRNLLGRS 649
            YRD G GD  KDDCSGXXXXXXXXXXXXX         RSMP A  A GF RA  K PG AV++ FGR PAP                         SLPFPVFVDANPPP AGKPRNRG                  XXXXXXXXX  V+SPSSRRRGGELSIL+DSYEWDP+AP HLSSYNVYDDSP R  D     GA    RSG   AVPR++LG S
Sbjct:  308 YRDRG-GDRSKDDCSGXXXXXXXXXXXXXGFP------RSMPMAGHAPGFARAEKKLPG-AVVRVFGRGPAPPGDDAAGATPEVAAGTAAAS-----SLPFPVFVDANPPP-AGKPRNRGATAAFSAPAEKALEEELPXXXXXXXXXXVVMSPSSRRRGGELSILDDSYEWDPSAPGHLSSYNVYDDSPTRLDDDAACGGAGDAVRSGVDVAVPRHVLGGS 514
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig154.3784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEK5_9PHAE1.710e-3657.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig154contigE-fasciculatus_F_contig154:873..1522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001580.1
Exons1
Model size650
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.7592244-UTR-E-fasciculatus_F_contig154:872..10361622928016.7592244-UTR-E-fasciculatus_F_contig154:872..1036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig154 873..1036 +
1695995790.1444104-UTR-E-fasciculatus_F_contig154:872..10361695995790.1444104-UTR-E-fasciculatus_F_contig154:872..1036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig154 873..1036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.7744684-CDS-E-fasciculatus_F_contig154:1036..15221622928016.7744684-CDS-E-fasciculatus_F_contig154:1036..1522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 1037..1522 +
1695995790.1543975-CDS-E-fasciculatus_F_contig154:1036..15221695995790.1543975-CDS-E-fasciculatus_F_contig154:1036..1522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 1037..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig154.3784.1prot_E-fasciculatus_F_contig154.3784.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig154 1037..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig154.3784.1

>prot_E-fasciculatus_F_contig154.3784.1 ID=prot_E-fasciculatus_F_contig154.3784.1|Name=mRNA_E-fasciculatus_F_contig154.3784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=162bp
MESSPPRLREDGDTTAAAAAGSGSGGSFSLACSAITAAVVVLPRLRGFPA
EGGGLASTNTGNGNDDDDDDDDAAAVVPTATTSPPPPPLGGAGARPKDFR
TAAPGGFVPARVNPEASSAGGIDRENPPPPPLPPAAAAVDASSLPPPLQS
SLNPSPRPSSR*
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mRNA from alignment at E-fasciculatus_F_contig154:873..1522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig154.3784.1 ID=mRNA_E-fasciculatus_F_contig154.3784.1|Name=mRNA_E-fasciculatus_F_contig154.3784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig154:873..1522+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAACGACCAAGAAGGTTCCTAGGAACGGCGGCTGGGGAGCCGCTCCTC
CGGGCTCCGTCGTCGTCGTCGTCGTCGAACCGCCGCACCGGGGAGTCGTC
GTATACGTTGTAGGACGACAGGTGGCTCGGCGCCGTCGGGTCCCACTCGT
AGCTGTCCTCCAGGATGGAGAGCTCTCCTCCACGCCTGCGCGAGGACGGC
GACACCACCGCCGCCGCCGCCGCTGGCAGCGGGAGCGGGGGCTCCTTCTC
TTTGGCTTGCTCTGCCATCACAGCGGCGGTTGTTGTCCTGCCGCGGTTGC
GGGGTTTCCCGGCGGAAGGAGGCGGGTTGGCGTCTACGAACACGGGGAAC
GGCAACGATGATGATGATGACGATGACGATGCTGCCGCCGTCGTGCCCAC
GGCTACTACATCACCACCACCACCACCACTCGGAGGCGCAGGAGCACGTC
CGAAAGACTTCAGGACAGCAGCACCTGGCGGTTTCGTCCCCGCTCGGGTG
AATCCCGAAGCCTCTTCTGCCGGTGGCATCGACCGAGAAAACCCTCCGCC
CCCGCCCCTGCCGCCGGCAGCAGCAGCAGTAGACGCATCATCGCTACCAC
CGCCGCTGCAATCGTCCTTGAATCCATCACCGCGGCCGTCGTCGCGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig154:873..1522+

>mRNA_E-fasciculatus_F_contig154.3784.1 ID=mRNA_E-fasciculatus_F_contig154.3784.1|Name=mRNA_E-fasciculatus_F_contig154.3784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-fasciculatus_F_contig154:873..1522+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGAGCTCTCCTCCACGCCTGCGCGAGGACGGCGACACCACCGCCGC
CGCCGCCGCTGGCAGCGGGAGCGGGGGCTCCTTCTCTTTGGCTTGCTCTG
CCATCACAGCGGCGGTTGTTGTCCTGCCGCGGTTGCGGGGTTTCCCGGCG
GAAGGAGGCGGGTTGGCGTCTACGAACACGGGGAACGGCAACGATGATGA
TGATGACGATGACGATGCTGCCGCCGTCGTGCCCACGGCTACTACATCAC
CACCACCACCACCACTCGGAGGCGCAGGAGCACGTCCGAAAGACTTCAGG
ACAGCAGCACCTGGCGGTTTCGTCCCCGCTCGGGTGAATCCCGAAGCCTC
TTCTGCCGGTGGCATCGACCGAGAAAACCCTCCGCCCCCGCCCCTGCCGC
CGGCAGCAGCAGCAGTAGACGCATCATCGCTACCACCGCCGCTGCAATCG
TCCTTGAATCCATCACCGCGGCCGTCGTCGCGATAGATGGAGAGCTCTCC
TCCACGCCTGCGCGAGGACGGCGACACCACCGCCGCCGCCGCCGCTGGCA
GCGGGAGCGGGGGCTCCTTCTCTTTGGCTTGCTCTGCCATCACAGCGGCG
GTTGTTGTCCTGCCGCGGTTGCGGGGTTTCCCGGCGGAAGGAGGCGGGTT
GGCGTCTACGAACACGGGGAACGGCAACGATGATGATGATGACGATGACG
ATGCTGCCGCCGTCGTGCCCACGGCTACTACATCACCACCACCACCACCA
CTCGGAGGCGCAGGAGCACGTCCGAAAGACTTCAGGACAGCAGCACCTGG
CGGTTTCGTCCCCGCTCGGGTGAATCCCGAAGCCTCTTCTGCCGGTGGCA
TCGACCGAGAAAACCCTCCGCCCCCGCCCCTGCCGCCGGCAGCAGCAGCA
GTAGACGCATCATCGCTACCACCGCCGCTGCAATCGTCCTTGAATCCATC
ACCGCGGCCGTCGTCGCGATAG
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