mRNA_E-fasciculatus_F_contig1538.3775.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI) HSP 1 Score: 191 bits (484), Expect = 2.290e-54 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 2
Query: 2 KMTIAKKIGEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT 286
KMTIAKKIGEYCIACELARLF DMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT
Sbjct: 243 KMTIAKKIGEYCIACELARLFHDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT 337
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A443SI43_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SI43_9ACAR) HSP 1 Score: 82.8 bits (203), Expect = 1.880e-16 Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 2
Query: 29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAP 271
E C+ CE++RLFQ+ +S G + P++P+RLL VW+ + LAGYEQQDAHEFLIA LD LH H SN P
Sbjct: 252 EMCLVCEMSRLFQEFYS--------GKSTPHIPYRLLHLVWTHARHLAGYEQQDAHEFLIATLDVLHKHCKETNGASSNNP 324
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: UPI001E1D9753 (ubiquitin carboxyl-terminal hydrolase 22-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9753) HSP 1 Score: 82.0 bits (201), Expect = 3.400e-16 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 11 IAKKIGEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDES-NAP 271
++K+ E C+ CEL+R+FQ+ +S G + Y+P RLL VW+++ LAGYEQQDAHEFLIA LD LH H + S N+P
Sbjct: 195 MSKEANEQCLVCELSRIFQEFYS--------GISSTYIPFRLLHLVWTSARHLAGYEQQDAHEFLIAALDLLHRHCIAGSNGRSSNSP 274
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A3S3RPC7_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RPC7_9ACAR) HSP 1 Score: 80.9 bits (198), Expect = 8.330e-16 Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 2
Query: 29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAP 271
E C+ CE++RLFQ+ +S G + P++P++LL VW+ + LAGYEQQDAHEFLIA LD LH H SN P
Sbjct: 170 EMCLVCEMSRLFQEFYS--------GKSTPHIPYKLLHLVWTHARHLAGYEQQDAHEFLIATLDVLHKHCKGTNGASSNNP 242
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A3S1AZY2_ELYCH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AZY2_ELYCH) HSP 1 Score: 80.9 bits (198), Expect = 8.900e-16 Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query: 26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
+ C+ CE+ARL+Q+ +S G PY+P+RLL VW+ + LAGYEQQDAHEFLIA LD LH H
Sbjct: 200 SQQCLVCEMARLYQEFYS--------GSRTPYIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 261
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: K1PH84_CRAGI (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Crassostrea TaxID=6564 RepID=K1PH84_CRAGI) HSP 1 Score: 80.5 bits (197), Expect = 1.210e-15 Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query: 26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
+ C+ CE+ARLFQ+ +S G+ P++P+RLL VW+ + LAGYEQQDAHEFLIA LD LH H
Sbjct: 202 AQQCLVCEMARLFQEFYS--------GNRTPHIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 263
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A060YVV1_ONCMY (USP domain-containing protein n=2 Tax=Salmonidae TaxID=8015 RepID=A0A060YVV1_ONCMY) HSP 1 Score: 75.5 bits (184), Expect = 1.760e-15 Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query: 35 CIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
C+ CE+++LFQ+ +S G P++P RLL VW+ + LAGYEQQDAHEFLIA LD LH H
Sbjct: 32 CLVCEMSQLFQEFYS--------GHRSPHIPFRLLHLVWTHARHLAGYEQQDAHEFLIAALDVLHRH 90
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A4Y2KZA6_ARAVE (Ubiquitin carboxyl-terminal hydrolase 22-A n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KZA6_ARAVE) HSP 1 Score: 79.3 bits (194), Expect = 2.130e-15 Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 2
Query: 29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDE 259
E C+ACE+ +FQ+ +S G ++P++P++L+ +W +E+L G++QQDAHEFLIA+LD LH H DE
Sbjct: 32 ESCLACEMFNIFQEFYS--------GQSDPHIPYKLVYLIWKHAEYLIGFDQQDAHEFLIAILDGLHAHCQNKETDE 100
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A0B7A1L4_9EUPU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A1L4_9EUPU) HSP 1 Score: 79.7 bits (195), Expect = 2.260e-15 Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2
Query: 26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
+ C+ CE+ARL+Q+ +S G PY+P++LL VW+ + LAGYEQQDAHEFLIA LD LH H
Sbjct: 199 SQQCLVCEMARLYQEFYS--------GSRTPYIPYKLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 260
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: UPI00193AC812 (ubiquitin carboxyl-terminal hydrolase 22-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AC812) HSP 1 Score: 79.7 bits (195), Expect = 2.270e-15 Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 2
Query: 35 CIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDE-SNAPV 274
C+ CE+ RLFQ+ ++ + A Y+P+RLL VW+ + LAGYEQQDAHEFLIA LD LH HL + + SN+P+
Sbjct: 231 CLVCEMMRLFQEFYAAKQTA--------YIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDLLHQHLSASNESKNSNSPM 303 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1538.3775.1 >prot_E-fasciculatus_F_contig1538.3775.1 ID=prot_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp EDDDCQEDRGVLHRVRACAAVPGHVLDRSRRRYARRHGALRAPPAPRGRVback to top mRNA from alignment at E-fasciculatus_F_contig1538:2..582- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1538.3775.1 ID=mRNA_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:2..582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1538:2..582- >mRNA_E-fasciculatus_F_contig1538.3775.1 ID=mRNA_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:2..582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |