mRNA_E-fasciculatus_F_contig15379.3774.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15379.3774.1
Unique NamemRNA_E-fasciculatus_F_contig15379.3774.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: D7G6I9_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.060e-14
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYK 111
            FPAINRVVEAIQKKKAKDRLIIAAV+AACIFFT WYK
Sbjct:  184 FPAINRVVEAIQKKKAKDRLIIAAVMAACIFFTFWYK 220
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A7S1BGG8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGG8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.660e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 PAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKF 114
            P +NR+++AI+KKK KD LII+ VIAAC+ FT+WY F
Sbjct:  218 PGVNRLIDAIRKKKNKDNLIISGVIAACVLFTMWYLF 254
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A448Z571_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z571_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.440e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKF 114
             P IN +VE I+KK++KD +I+A VIA+CI FTLWY F
Sbjct:  195 IPGINTLVEQIRKKRSKDDMIVAGVIASCILFTLWYLF 232
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A6T6I2A5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6I2A5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.750e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKF 114
             P IN +VE I++K++KD +I+A VIA+CI FTLWY F
Sbjct:  192 IPGINTLVERIRRKRSKDDMIVAGVIASCILFTLWYLF 229
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A6S9HNZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HNZ6_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 1.000e-5
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKF 114
             P+I RVVEAIQKKK +D +I+  VIA  I FTLWY F
Sbjct:  194 LPSIGRVVEAIQKKKYRDNMIVGGVIALLICFTLWYLF 231
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A7S1D086_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D086_CYCTE)

HSP 1 Score: 48.9 bits (115), Expect = 1.380e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 PAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKF 114
            P +NR++E I++KKA+D LI++ VIA CI FTLWY F
Sbjct:  194 PGLNRLMENIRRKKARDDLIVSIVIALCIVFTLWYIF 230
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BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Match: A0A7R9VDP4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VDP4_9CHLO)

HSP 1 Score: 46.2 bits (108), Expect = 3.070e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWY 108
            FP +N V+ AI++KK KD L++AAVIA C+ FTL Y
Sbjct:   61 FPMVNSVLNAIRRKKNKDTLVLAAVIAGCVLFTLVY 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15379.3774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G6I9_ECTSI4.060e-1494.59Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A7S1BGG8_9STRA1.660e-762.16Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A448Z571_9STRA1.440e-660.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6T6I2A5_9STRA3.750e-657.89Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6S9HNZ6_HETAK1.000e-563.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1D086_CYCTE1.380e-559.46Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9VDP4_9CHLO3.070e-558.33Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15379contigE-fasciculatus_F_contig15379:303..422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7G6I9
Preferred nameGOSR1
KEGG koko:K08495
KEGG Pathwayko04130,map04130
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001101,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032879,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048209,GO:0048284,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097305,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1901700
EggNOG free text desc.regulation of vesicle targeting, to, from or within Golgi
EggNOG OGsKOG3208@1,KOG3208@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-05_006350.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.5624263-CDS-E-fasciculatus_F_contig15379:302..4221622928014.5624263-CDS-E-fasciculatus_F_contig15379:302..422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15379 303..422 -
1695995789.4096937-CDS-E-fasciculatus_F_contig15379:302..4221695995789.4096937-CDS-E-fasciculatus_F_contig15379:302..422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15379 303..422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15379.3774.1prot_E-fasciculatus_F_contig15379.3774.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15379 303..422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15379.3774.1

>prot_E-fasciculatus_F_contig15379.3774.1 ID=prot_E-fasciculatus_F_contig15379.3774.1|Name=mRNA_E-fasciculatus_F_contig15379.3774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
FPAINRVVEAIQKKKAKDRLIIAAVIAACIFFTLWYKFL*
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mRNA from alignment at E-fasciculatus_F_contig15379:303..422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15379.3774.1 ID=mRNA_E-fasciculatus_F_contig15379.3774.1|Name=mRNA_E-fasciculatus_F_contig15379.3774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15379:303..422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCCGGCAATAAACCGAGTGGTGGAGGCGATCCAGAAGAAGAAGGCCAA
GGACCGATTGATTATCGCGGCCGTCATAGCCGCTTGCATATTCTTCACGT
TGTGGTACAAGTTCTTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15379:303..422-

>mRNA_E-fasciculatus_F_contig15379.3774.1 ID=mRNA_E-fasciculatus_F_contig15379.3774.1|Name=mRNA_E-fasciculatus_F_contig15379.3774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15379:303..422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCCGGCAATAAACCGAGTGGTGGAGGCGATCCAGAAGAAGAAGGCCAA
GGACCGATTGATTATCGCGGCCGTCATAGCCGCTTGCATATTCTTCACGT
TGTGGTACAAGTTCTTGTAGTTCCCGGCAATAAACCGAGTGGTGGAGGCG
ATCCAGAAGAAGAAGGCCAAGGACCGATTGATTATCGCGGCCGTCATAGC
CGCTTGCATATTCTTCACGTTGTGGTACAAGTTCTTGTAG
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