mRNA_E-fasciculatus_F_contig15377.3773.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15377.3773.1
Unique NamemRNA_E-fasciculatus_F_contig15377.3773.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 3.880e-71
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 1
Query:    4 QAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            QA+GHRCLI SQFASMLDILQDLCLARGYEHGRLD+STSSPQTRLD RRFNAPESKVSVLLVPTRM GASGGLNLTAADTVILYDSHWNPQVDLQAIER HRIGQS PVKVFRLLCRRSVEERIVA
Sbjct: 1288 QAKGHRCLILSQFASMLDILQDLCLARGYEHGRLDESTSSPQTRLDARRFNAPESKVSVLLVPTRMTGASGGLNLTAADTVILYDSHWNPQVDLQAIERVHRIGQSKPVKVFRLLCRRSVEERIVA 1413          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 9.830e-71
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 1
Query:    4 QAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            QA+GHRCLI SQFASMLDIL+DLCLARGYEHGRLD+STSS QTRLD RRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQS PVKVFRLLCRRSVEERIVA
Sbjct: 1305 QAKGHRCLILSQFASMLDILEDLCLARGYEHGRLDESTSSSQTRLDARRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSKPVKVFRLLCRRSVEERIVA 1430          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A836C7V0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.610e-45
Identity = 78/126 (61.90%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    4 QAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            +A GHR L+F+QF SMLDIL++ C+AR +E+ RLD  T+  Q RLD+RRFNAP S + + L+ TR  G   G+NL +ADTVILYDS WNPQVDLQA+ERAHRIGQ+ PV+V+R++CR SVEER+V+
Sbjct:  328 RADGHRVLLFTQFTSMLDILEEYCIARSHEYARLDGDTNRVQRRLDIRRFNAPASPLFIFLISTRAGGL--GINLASADTVILYDSDWNPQVDLQAMERAHRIGQTKPVRVYRMVCRGSVEERMVS 451          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: K8Z8U9_NANGC (Swi snf-related matrix-associated actin-dependent regulator of chromatin a1 isoform a isoform 19 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8U9_NANGC)

HSP 1 Score: 162 bits (409), Expect = 1.130e-43
Identity = 80/126 (63.49%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    4 QAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            +A GHR L+FSQF SMLDIL++ C  RG+E+ RLD ST+  Q RLD+RRFNAP S + V L+ TR  G   G+NL +ADTV+LYDS WNPQVDLQA+ERAHRIGQ+ PV+V+RL+ R SVEER+V+
Sbjct:  662 KADGHRVLLFSQFTSMLDILEEYCQMRGHEYVRLDGSTNRVQRRLDMRRFNAPGSNLFVFLISTRAGGV--GINLASADTVVLYDSDWNPQVDLQAMERAHRIGQTKPVRVYRLVVRASVEERMVS 785          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: W7TYI9_9STRA (Swi snf matrix actin dependent regulator of subfamily member 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYI9_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.940e-43
Identity = 80/126 (63.49%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    4 QAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            +A GHR L+FSQF SMLDIL++ C  RG+E+ RLD ST+  Q RLD+RRFNAP S + V L+ TR  G   G+NL +ADTV+LYDS WNPQVDLQA+ERAHRIGQ  PV+V+RL+ R SVEER+V+
Sbjct: 1755 KADGHRVLLFSQFTSMLDILEEYCQMRGHEYVRLDGSTNRVQRRLDMRRFNAPGSNLFVFLISTRAGGV--GINLASADTVVLYDSDWNPQVDLQAMERAHRIGQIKPVRVYRLVVRASVEERMVS 1878          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A7S3M4L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4L2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.540e-42
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 1
Query:   13 GHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            GHR LIFSQF SMLD+L+D C  R Y   RLD  T+  + RLD RRFNAP S + + L+ TR  G   GLNL +ADTVILYDS WNPQVDLQA+ERAHRIGQ+ PV+V+RL+CR SVEER+V+
Sbjct:  173 GHRVLIFSQFTSMLDLLEDYCELREYPFVRLDGETNRVKRRLDCRRFNAPRSPLFIFLISTRAGGL--GLNLASADTVILYDSDWNPQVDLQAMERAHRIGQTKPVRVYRLVCRGSVEERMVS 293          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A7S3UX20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX20_HETAK)

HSP 1 Score: 142 bits (357), Expect = 1.520e-39
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   13 GHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIVA 381
            GHR L+FSQF SMLDIL+D CL R Y + RLD  T+  Q RLD+RR+NAP SK+ + LV TR  G   G+NL  ADTV+L+DS WNP +D QA +RAHRIGQ N V+V RL     VEE+I++
Sbjct:   19 GHRVLLFSQFTSMLDILEDYCLYRKYNYCRLDGETNRVQRRLDIRRYNAPGSKLFIFLVSTRAGGL--GVNLATADTVVLFDSDWNPMMDAQAQDRAHRIGQKNEVRVLRLCTNSPVEEKILS 139          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A2D4L2B7_9SAUR (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4L2B7_9SAUR)

HSP 1 Score: 133 bits (335), Expect = 2.210e-36
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   10 QGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIV 378
            QG R L+FSQ   +LDIL+D C+ RGYE+ RLD  T   +    +  FNAP S+  V ++ TR  G   G+NL  AD VILYDS WNPQVDLQA++RAHRIGQ   V+VFRL+   +VEERIV
Sbjct:   75 QGSRVLVFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSRKFVFMLSTRAGGL--GINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKAVRVFRLITDNTVEERIV 195          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A1X0NY53_9TRYP (Transcription activator n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NY53_9TRYP)

HSP 1 Score: 139 bits (351), Expect = 7.270e-36
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 FQAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIV 378
            F+ +GHRCLIFS F S+LD+LQ LC+ RGY   RLD ST   +  L + RFNAP+S   + L+ T   G   G+ LT ADTVIL+DSH+NPQ+D QA +RAHRIGQ+  V+V+RL  R ++EERI+
Sbjct:  544 FKEEGHRCLIFSNFTSILDLLQALCVLRGYSFERLDGSTQRVERELSMTRFNAPDSACFLFLLTTTAGGV--GVTLTGADTVILFDSHYNPQIDRQAADRAHRIGQTRVVRVYRLCLRNTMEERIL 667          
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Match: A0A7S2WMT9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WMT9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.030e-35
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   13 GHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRRFNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIERAHRIGQSNPVKVFRLLCRRSVEERIV 378
            GHR +IFSQF + LDILQD C  RGY+  RLD ST+  Q  +D+ ++N  +S     L+ TR  G   G+NL  ADTVILYDS WNPQVDLQA++R HRIGQ+ PV V+RL+ + +VEER+V
Sbjct: 1214 GHRVVIFSQFTATLDILQDFCSLRGYKFSRLDGSTNRVQRAIDIMQYNKEDSTYFAYLMSTRAGGL--GINLATADTVILYDSDWNPQVDLQAMDRVHRIGQTKPVHVYRLIAKGTVEERVV 1333          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15377.3773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY6_ECTSI3.880e-7194.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE9.830e-7194.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7V0_9STRA2.610e-4561.90P-loop containing nucleoside triphosphate hydrolas... [more]
K8Z8U9_NANGC1.130e-4363.49Swi snf-related matrix-associated actin-dependent ... [more]
W7TYI9_9STRA2.940e-4363.49Swi snf matrix actin dependent regulator of subfam... [more]
A0A7S3M4L2_9STRA2.540e-4264.23Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3UX20_HETAK1.520e-3957.72Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4L2B7_9SAUR2.210e-3655.28Helicase C-terminal domain-containing protein (Fra... [more]
A0A1X0NY53_9TRYP7.270e-3654.76Transcription activator n=1 Tax=Trypanosoma theile... [more]
A0A7S2WMT9_9STRA1.030e-3555.74Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15377contigE-fasciculatus_F_contig15377:2234..3030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue3.6e-61
Seed eggNOG ortholog2880.D8LCY6
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsCOG0553@1,KOG0385@2759,KOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.4651444-CDS-E-fasciculatus_F_contig15377:2233..23381622928014.4651444-CDS-E-fasciculatus_F_contig15377:2233..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15377 2234..2338 -
1695995789.3882263-CDS-E-fasciculatus_F_contig15377:2233..23381695995789.3882263-CDS-E-fasciculatus_F_contig15377:2233..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15377 2234..2338 -
1622928014.4813852-CDS-E-fasciculatus_F_contig15377:2754..30301622928014.4813852-CDS-E-fasciculatus_F_contig15377:2754..3030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15377 2755..3030 -
1695995789.3993392-CDS-E-fasciculatus_F_contig15377:2754..30301695995789.3993392-CDS-E-fasciculatus_F_contig15377:2754..3030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15377 2755..3030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15377.3773.1prot_E-fasciculatus_F_contig15377.3773.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15377 2234..3030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15377.3773.1

>prot_E-fasciculatus_F_contig15377.3773.1 ID=prot_E-fasciculatus_F_contig15377.3773.1|Name=mRNA_E-fasciculatus_F_contig15377.3773.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
FQAQGHRCLIFSQFASMLDILQDLCLARGYEHGRLDQSTSSPQTRLDVRR
FNAPESKVSVLLVPTRMAGASGGLNLTAADTVILYDSHWNPQVDLQAIER
AHRIGQSNPVKVFRLLCRRSVEERIVA
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mRNA from alignment at E-fasciculatus_F_contig15377:2234..3030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15377.3773.1 ID=mRNA_E-fasciculatus_F_contig15377.3773.1|Name=mRNA_E-fasciculatus_F_contig15377.3773.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=797bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15377:2234..3030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCAGGCGCAGGGGCACCGCTGCTTGATCTTCTCGCAGTTCGCGTCCAT GCTAGACATCCTCCAGGACCTGTGCCTGGCAAGAGGTTACGAGCACGGCC GCCTGGACCAGTCTACCAGCAGCCCGCAGACAAGACTGGACGTCCGCCGC TTCAACGCGCCGGAGTCGAAGGTGTCGGTGTTGCTCGTGCCGACTAGGAT GGCCGGGGCGTCGGGAGGCCTCAATCTCACCGCCGCGGATACGGTGATCC TCTACGATAGCCACTGGAACCCCCAGGTGGGTGCTGCCCTTGGGTGTTCG ACTTGTGGGTGCGAGTATTTCGTGAGATTTATGGTGTTTCGTGGGATTTA TGGCGTGTCGTGGTTTTGTATGCATGTAGGCATTTACTGTAGGTCGGTGC TGGCCCCCCCTCGGGTGTGGGAGTTGTAGGGTACCGGTTGTGTGGTGTCG TGATCATGTAGGCACTTAGGTCGATGCAGGCCTCCGGTGTGAGACGTGTG TATTTTGAGCGTGGCGTGTTGTATTTCATGTAGGCACATTTGGTGCGGGG TGTGTCCAGATCGACCACGCCTCAAAAGCGGTTCTCGTGCTGCTTGTCCA GGTAACCCATTCAAATGTTGGAGTGGTTTGCGTAAGCCATCACAATGAAC CCCCAACTTCAACCCCCCCCCCCCCCTCTCCGCACATCGAAGGTGGACCT GCAAGCGATAGAGCGGGCGCACCGGATCGGCCAGTCGAACCCGGTAAAGG TGTTCCGGCTGTTGTGTAGGCGTTCCGTGGAAGAGAGGATAGTCGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15377:2234..3030-

>mRNA_E-fasciculatus_F_contig15377.3773.1 ID=mRNA_E-fasciculatus_F_contig15377.3773.1|Name=mRNA_E-fasciculatus_F_contig15377.3773.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15377:2234..3030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCAGGCGCAGGGGCACCGCTGCTTGATCTTCTCGCAGTTCGCGTCCAT
GCTAGACATCCTCCAGGACCTGTGCCTGGCAAGAGGTTACGAGCACGGCC
GCCTGGACCAGTCTACCAGCAGCCCGCAGACAAGACTGGACGTCCGCCGC
TTCAACGCGCCGGAGTCGAAGGTGTCGGTGTTGCTCGTGCCGACTAGGAT
GGCCGGGGCGTCGGGAGGCCTCAATCTCACCGCCGCGGATACGGTGATCC
TCTACGATAGCCACTGGAACCCCCAGTTTCAGGCGCAGGGGCACCGCTGC
TTGATCTTCTCGCAGTTCGCGTCCATGCTAGACATCCTCCAGGACCTGTG
CCTGGCAAGAGGTTACGAGCACGGCCGCCTGGACCAGTCTACCAGCAGCC
CGCAGACAAGACTGGACGTCCGCCGCTTCAACGCGCCGGAGTCGAAGGTG
TCGGTGTTGCTCGTGCCGACTAGGATGGCCGGGGCGTCGGGAGGCCTCAA
TCTCACCGCCGCGGATACGGTGATCCTCTACGATAGCCACTGGAACCCCC
AGGTGGACCTGCAAGCGATAGAGCGGGCGCACCGGATCGGCCAGTCGAAC
CCGGTAAAGGTGTTCCGGCTGTTGTGTAGGCGTTCCGTGGAAGAGAGGAT
AGTCGCGGTGGACCTGCAAGCGATAGAGCGGGCGCACCGGATCGGCCAGT
CGAACCCGGTAAAGGTGTTCCGGCTGTTGTGTAGGCGTTCCGTGGAAGAG
AGGATAGTCGCG
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