mRNA_E-fasciculatus_F_contig15367.3768.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15367.3768.1
Unique NamemRNA_E-fasciculatus_F_contig15367.3768.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: D8LCV2_ECTSI (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.890e-52
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            HTFSAMLLLPFIGTTLGLLRYNW+PARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPR +
Sbjct:  272 HTFSAMLLLPFIGTTLGLLRYNWYPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRMD 359
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A835ZAX3_9STRA (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.950e-42
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H FSA L++PF+GTTLGLL YNW+P+  FVGDTYCYFAGMTFAV GIHGHFSKTL+LMF+PQ  NF LSVPQLFK++PCPRHRLPR +
Sbjct:  315 HVFSAQLMMPFVGTTLGLLWYNWYPSLVFVGDTYCYFAGMTFAVAGIHGHFSKTLVLMFIPQWINFFLSVPQLFKLVPCPRHRLPRVD 402
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A6U5M6M7_9STRA (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5M6M7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.640e-41
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H FSAM++  F+G TLGLLR+NW+PAR FVGDTYCYFAGM FAVVGIHGHFSKTL+L F+PQV NFL SVPQLFK++PCPRHRLPR +
Sbjct:  336 HLFSAMIMFSFVGVTLGLLRHNWYPARVFVGDTYCYFAGMAFAVVGIHGHFSKTLLLFFMPQVANFLWSVPQLFKMVPCPRHRLPRFD 423
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A7S3YG26_HETAK (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG26_HETAK)

HSP 1 Score: 145 bits (365), Expect = 6.210e-41
Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 2 
Query:    8 FSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            F+ MLL PF+  TLGLL++NW+P++ FVGDT+CYFAGMTFAV GIHGHFSKTL+LMF+PQV NFLLSVPQLFK++PCPRHRLP+ +
Sbjct:  140 FAVMLLFPFVAVTLGLLKHNWYPSQVFVGDTFCYFAGMTFAVTGIHGHFSKTLLLMFIPQVLNFLLSVPQLFKLVPCPRHRLPKFD 225
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A7S1V7A7_9STRA (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7A7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.280e-40
Identity = 63/88 (71.59%), Postives = 77/88 (87.50%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H F+ M++LPF+G T GLLR+NW+PA  FVGDT+CYFAGMTFAVVGI GHFSKTL+L F+PQV NF+ S+PQLFK++PCPRHRLPR +
Sbjct:  141 HLFATMIMLPFLGVTAGLLRHNWYPASVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQVLNFIWSIPQLFKLVPCPRHRLPRFD 228
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A8J9X392_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X392_PHATR)

HSP 1 Score: 139 bits (351), Expect = 1.050e-39
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLP 256
            H FS M++L F+G TLGLL++NWFPA  FVGDT+CYFAGMTFAVVGI GHFSKTL+L F+PQV NF+ SVPQLFK +PCPRHRLP
Sbjct:   59 HLFSVMVMLSFVGVTLGLLKHNWFPASVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQVINFVWSVPQLFKFVPCPRHRLP 143
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A7S2KQY4_9STRA (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KQY4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.670e-39
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H FSAM++  F+G TL LLRYNW+PA  FVGDTYCYFAGMTFAV GI GHFSKTL+L F+PQ+ NFLLS+PQLFK++PCPRHRLPR +
Sbjct:  265 HLFSAMIMFSFLGVTLALLRYNWYPASVFVGDTYCYFAGMTFAVSGILGHFSKTLLLFFIPQIINFLLSIPQLFKLVPCPRHRLPRFD 352
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BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: T1I8K5_RHOPR (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=3 Tax=Triatominae TaxID=70999 RepID=T1I8K5_RHOPR)

HSP 1 Score: 143 bits (361), Expect = 1.980e-39
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H FS   ++PF+ TTL LL+YNWFP++ FVGDT+CYFAGMTFAVVGI GHFSKT++L F+PQV NFL SVPQLF ++PCPRHRLPRC 
Sbjct:  221 HQFSLCFIIPFMATTLALLKYNWFPSKVFVGDTFCYFAGMTFAVVGILGHFSKTVLLFFIPQVVNFLYSVPQLFHIIPCPRHRLPRCN 308
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A7S2FBE4_9STRA (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBE4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.400e-39
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            + F+  L+LPF+G TLGLL YNW+P+  FVGDT+CYFAGMTFAVVGIHGHF+K L L FLPQ+ NF  S+PQLFK++PCPRHRLPR +
Sbjct:   47 YMFALTLILPFVGNTLGLLAYNWYPSTVFVGDTFCYFAGMTFAVVGIHGHFTKPLWLFFLPQLANFFYSIPQLFKLVPCPRHRLPRVD 134
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Match: A0A1Z5K570_FISSO (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K570_FISSO)

HSP 1 Score: 144 bits (362), Expect = 3.500e-39
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 2 
Query:    2 HTFSAMLLLPFIGTTLGLLRYNWFPARAFVGDTYCYFAGMTFAVVGIHGHFSKTLILMFLPQVTNFLLSVPQLFKVLPCPRHRLPRCE 265
            H FS ML+L FIG TLGLLR+NW+PA  FVGDT+CYFAGMTFAVVGI GHFSKTL+L+F+PQV NFL S PQLFK++PCPRHRLPR +
Sbjct:  287 HLFSVMLMLCFIGVTLGLLRHNWYPATVFVGDTFCYFAGMTFAVVGILGHFSKTLLLLFIPQVINFLWSTPQLFKLVPCPRHRLPRYD 374
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15367.3768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV2_ECTSI3.890e-5296.59UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A835ZAX3_9STRA5.950e-4277.27UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A6U5M6M7_9STRA1.640e-4177.27UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A7S3YG26_HETAK6.210e-4174.42UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A7S1V7A7_9STRA5.280e-4071.59UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A8J9X392_PHATR1.050e-3975.29Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S2KQY4_9STRA1.670e-3973.86UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
T1I8K5_RHOPR1.980e-3971.59UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A7S2FBE4_9STRA3.400e-3969.32UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
A0A1Z5K570_FISSO3.500e-3976.14UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15367contigE-fasciculatus_F_contig15367:1306..2765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15367.3768.1prot_E-fasciculatus_F_contig15367.3768.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15367 1313..2765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.6390529-UTR-E-fasciculatus_F_contig15367:1305..13121622928013.6390529-UTR-E-fasciculatus_F_contig15367:1305..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15367 1306..1312 -
1695995788.9853678-UTR-E-fasciculatus_F_contig15367:1305..13121695995788.9853678-UTR-E-fasciculatus_F_contig15367:1305..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15367 1306..1312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.6528847-CDS-E-fasciculatus_F_contig15367:1312..13831622928013.6528847-CDS-E-fasciculatus_F_contig15367:1312..1383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 1313..1383 -
1695995788.994472-CDS-E-fasciculatus_F_contig15367:1312..13831695995788.994472-CDS-E-fasciculatus_F_contig15367:1312..1383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 1313..1383 -
1622928013.668731-CDS-E-fasciculatus_F_contig15367:1847..19651622928013.668731-CDS-E-fasciculatus_F_contig15367:1847..1965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 1848..1965 -
1695995789.009859-CDS-E-fasciculatus_F_contig15367:1847..19651695995789.009859-CDS-E-fasciculatus_F_contig15367:1847..1965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 1848..1965 -
1622928013.6845403-CDS-E-fasciculatus_F_contig15367:2696..27651622928013.6845403-CDS-E-fasciculatus_F_contig15367:2696..2765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 2697..2765 -
1695995789.0233767-CDS-E-fasciculatus_F_contig15367:2696..27651695995789.0233767-CDS-E-fasciculatus_F_contig15367:2696..2765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15367 2697..2765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15367.3768.1

>prot_E-fasciculatus_F_contig15367.3768.1 ID=prot_E-fasciculatus_F_contig15367.3768.1|Name=mRNA_E-fasciculatus_F_contig15367.3768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
PYLLGHAPAAVHRDHARTPPVQLVPGTRFRGRHVLLLRRHDIRRGRHPRP
LQQDSHPHVLTPGYELPLVGAAAVQGVALPETSSA*
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mRNA from alignment at E-fasciculatus_F_contig15367:1306..2765-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15367.3768.1 ID=mRNA_E-fasciculatus_F_contig15367.3768.1|Name=mRNA_E-fasciculatus_F_contig15367.3768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15367:1306..2765- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCATACCTTCTCGGCCATGCTCCTGCTGCCGTTCATCGGGACCACGCTCG
GACTCCTCCGGTACAACTGGTAAGCTTTCGACAACCGTGCGCACCAAGTA
CGTACAATAGGGTTGCACAAGATACCACACACACTGAACCGATTTTTCAA
AGCTCGATTGCTCCACGACGGCGAGGGTACAAGAATATCACACGGTAAAC
GTTTTCGAAGCGATCTCGACGAGGCGATTCCAATGCCGCTATTTTCGACA
CCGTGCTCGAGCTTTGAGATCTGTCCAGGGGGGGATGGTATCTTGTGCAA
CACACAGTACAAGATCGAACGGTGTGTGTAGAATATGTTGGTTGCAAGCA
CGCCTGCGAGCATGTTGGCCTCCTGCGGTGTATTTGTCCTATCCCAATAT
CCTGCTGTTTTTGTCTCACCGTCTTGTTGTTGTCTGCGCCTTTTGGCATG
AGGCTTCAAACGTGCCCTACCGAGTACGAACGGTATTGCCCTTATCCCCT
CGCACCACATTCATGGCTCTACGCCGCGACACTACAACGCTCACAGCTTG
ACCGAGTACTCTCATCCAGTTCATAACGCCGTCAGTTTGAACGGTACCGT
TTTGTTTTTTCCGCACGACGCACACCCCTTTCGGCTATTTCGCTTTGCCG
TCGATGTACGTACGCGGCGTCTCGACCCTTTCATGCGCAGAAGAAGCAAT
ATCGCCAAGTTGATGCGTTGCGCGTGGTCGCTTTTCTCCGACAATTACAT
TCACTCCTTACAAGTCTCCTCCTCGGGTGTCCCTCTCCCTTCTCGCCCAG
GTTCCCGGCACGCGCTTTCGTGGGAGACACGTACTGCTACTTCGCCGGCA
TGACATTCGCCGTGGTCGGCATCCACGGCCACTTCAGCAAGACTCTCATC
CTCATGTTCTTACCCCAGGTGTGCTAGTATTTCTTTTTTTTGTCGCCTCT
TTCTTCCTGCTCATAGTCTCGTCGGTGTGTGTTATCGTGTTTTGTGTGTT
GTTTAATCAGAAATAACACAACCAAATTTCATCTCTTCCAGGGGTAAGAA
TCCGGGATAGACATGCAATTTTATCACAATTGTAACGCATGTTATTGTTT
ATTCTTCTCTATTTGCTGGCCGTATTTTTTGGTTGTTCCGCTGCCCCCAC
TCATTCTCTGGTGACCCACCGTTTGTCGGTTTCCTATCGCTTCCAATGTC
TGCGGCAGTTTGTTGTCGTGTCCGGTGCGCGTTTTTCCTGCCTTCCCCCA
GCCCTTACAACCCCACTCGTGTTTTCAACCAAACACAAATGTCGAGAGCA
ATGAATTTGTTTCTATTCGCGTGTATTATTTTTCCGGTTGTCGCTTGCGT
CCTCACATCTTTTTGTCCTTCGTGTTTGCCAGGTTACGAACTTCCTCTTG
TCGGTGCCGCAGCTGTTCAAGGTGTTGCCTTGCCCGAGACATCGTCTGCC
TAGGTGCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15367:1306..2765-

>mRNA_E-fasciculatus_F_contig15367.3768.1 ID=mRNA_E-fasciculatus_F_contig15367.3768.1|Name=mRNA_E-fasciculatus_F_contig15367.3768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15367:1306..2765- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCATACCTTCTCGGCCATGCTCCTGCTGCCGTTCATCGGGACCACGCTCG
GACTCCTCCGGTACAACTGCCATACCTTCTCGGCCATGCTCCTGCTGCCG
TTCATCGGGACCACGCTCGGACTCCTCCGGTACAACTGGTTCCCGGCACG
CGCTTTCGTGGGAGACACGTACTGCTACTTCGCCGGCATGACATTCGCCG
TGGTCGGCATCCACGGCCACTTCAGCAAGACTCTCATCCTCATGTTCTTA
CCCCAGGTTCCCGGCACGCGCTTTCGTGGGAGACACGTACTGCTACTTCG
CCGGCATGACATTCGCCGTGGTCGGCATCCACGGCCACTTCAGCAAGACT
CTCATCCTCATGTTCTTACCCCAGGTTACGAACTTCCTCTTGTCGGTGCC
GCAGCTGTTCAAGGTGTTGCCTTGCCCGAGACATCGTCTGCCTAGGTTAC
GAACTTCCTCTTGTCGGTGCCGCAGCTGTTCAAGGTGTTGCCTTGCCCGA
GACATCGTCTGCCTAG
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