mRNA_E-fasciculatus_F_contig15366.3767.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 380 bits (975), Expect = 7.550e-123 Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 1
Query: 13 GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDK 642
GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQ VLHALQMWSRKSSKMTYMNLKGGISAIEKDK
Sbjct: 488 GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQ-VLHALQMWSRKSSKMTYMNLKGGISAIEKDK 696
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.930e-63 Identity = 119/219 (54.34%), Postives = 148/219 (67.58%), Query Frame = 1
Query: 34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGG----------------IQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDK 642
RA L+SG PG+GK++ AT+VA+ +G+ V E NASDTRSK+S+ E L V+ N VLSF + K++++MDEVDGMGG DRGG + ELI LI ++VPII ICNDRQ KIRSLVNHC D+RF RP K IAKR+K VA+ EG+D+D NAAEML E+ GNDIRQ LHA+QMWSR S M YM +K G+ A+ KDK
Sbjct: 103 RAVLISGPPGIGKTTAATIVAKSLGFEVTEFNASDTRSKKSMEEGLKDVLSNTVLSFGSKAGSKPP------KRVIIMDEVDGMGGGDRGGRNVAEADVQMRLLARSMGELIKLIAITKVPIICICNDRQDTKIRSLVNHCIDMRFKRPVKTMIAKRMKEVAQKEGLDIDLNAAEMLSESVGNDIRQ-CLHAMQMWSRGSRTMAYMEVKDGLGAVSKDK 314
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN) HSP 1 Score: 209 bits (532), Expect = 3.390e-60 Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 1
Query: 16 KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKM---TYMNLKGGISAIEKDKV 645
K+NPGA+AALLSG PG+GKSS A L+ G+ V+ELNASDTRS R++ E L +G +V+S + +++V+MDE+DG+ GSDRGG Q L+ LIK S PII ICNDRQ K+++L NHC+DLRF RP KVTIAKRV A+A EG+ ++ NAAE+LVE+ GNDIRQ L+ALQMW+ + +Y +K +S I KD +
Sbjct: 170 KENPGAKAALLSGPPGIGKSSMAALLCAARGFDVVELNASDTRSARTVEETLGDALGCQVVSSSFAKKGAAPPSKKRLRRVVIMDEIDGLSGSDRGGSQALVKLIKSSSTPIICICNDRQSAKVKTLANHCFDLRFKRPMKVTIAKRVMAIAMKEGLTIEQNAAELLVESCGNDIRQ-CLNALQMWATSEGEAETCSYTAMKDRLSTISKDAI 381
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S2PS30_9STRA (Replication factor C subunit 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PS30_9STRA) HSP 1 Score: 209 bits (532), Expect = 9.180e-59 Identity = 114/210 (54.29%), Postives = 148/210 (70.48%), Query Frame = 1
Query: 34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSK------MTYMNLKGGISAIEKDKV 645
+AALLSG PG+GK++TATL+AR+ G V+ELNASD RSK++L+E L V G++VLSF +K++++MDEVDGMG DR G+ +LI +IK S+VPII ICNDRQ QK+RSLV +C DLR+ RP K TIA+R + +MEGM V+ NAAE + E+ GNDIRQ VL+ LQMWS K +K MTY +LK I KD+V
Sbjct: 637 KAALLSGPPGIGKTTTATLIARQSGRDVLELNASDARSKKALTEALGDVTGSQVLSFANQSSKKHVQP---QKRVIIMDEVDGMGAGDRSGMAQLIQMIKNSKVPIICICNDRQSQKVRSLVQYCLDLRYQRPVKTTIARRAVEIGRMEGMVVEPNAAEAIAESCGNDIRQ-VLNCLQMWSCKKNKGGDSANMTYKDLKDRKGEINKDEV 842
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S4IHD5_9STRA (Replication factor C subunit 1 (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHD5_9STRA) HSP 1 Score: 208 bits (529), Expect = 2.260e-58 Identity = 120/225 (53.33%), Postives = 153/225 (68.00%), Query Frame = 1
Query: 34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSF--TANGXXXXXXXXGF--------RKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK-----------SSKMTYMNLKGGISAIEKDKV 645
+AALLSG PG+GK++TATLVARE G V+ELNASD RSK+SL+E L V G++VL+F +A G XX +K++++MDEVDGMG DR G+ ELI +IKKS+VPII ICNDRQ QK+RSLV HC DLR+ RP K IA+R V +MEGM V+ NAAE + E+ GND+RQ VL+ LQMWS K ++ +TY LK AI KD++
Sbjct: 654 KAALLSGPPGIGKTTTATLVARESGRDVLELNASDARSKKSLTENLGDVTGSQVLNFAPSAKGGKGKGGXXXXXXXXPPRKQKRVIIMDEVDGMGAGDRSGMSELIAMIKKSKVPIICICNDRQSQKVRSLVAHCLDLRYRRPVKTVIARRAVEVGRMEGMHVEPNAAEAIAESCGNDVRQ-VLNCLQMWSSKKRDGNSDAAAGNNDLTYKGLKDRRDAISKDEM 877
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: B8C9T1_THAPS (Replication factor C subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9T1_THAPS) HSP 1 Score: 207 bits (527), Expect = 4.570e-58 Identity = 115/211 (54.50%), Postives = 151/211 (71.56%), Query Frame = 1
Query: 34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSF-TANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK------SSKMTYMNLKGGISAIEKDKV 645
+AALLSG PG+GK++TATLVARE G ++ELNASD RSK+SLS+ L V G++VL+F T +G +K+ ++MDEVDGMG DR G+ ELI +IK S+VPII ICNDR QK++SLV +C DLRF RP K TI +R + ++EGM+V++NAAE + E+ GNDIRQ VL+ +QMWS K SS +TY +LK S I KD+V
Sbjct: 686 KAALLSGPPGIGKTTTATLVARESGRDLLELNASDARSKKSLSQALGDVTGSQVLNFRTGDGKVKHVA----QKRCIIMDEVDGMGAGDRSGMSELIQMIKNSKVPIICICNDRSSQKMKSLVQYCMDLRFQRPNKKTIGRRAVEIGRVEGMEVEENAAEAMSESCGNDIRQ-VLNCMQMWSCKKNEAGQSSSVTYKDLKDRQSDINKDEV 891
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO) HSP 1 Score: 204 bits (519), Expect = 1.880e-57 Identity = 119/215 (55.35%), Postives = 149/215 (69.30%), Query Frame = 1
Query: 22 NPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTAN----GXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK----SSKMTYMNLKGGISAIEKDK 642
NPGARA LLSG PG+GKS+ A LVAR +GY V E+NASDTRSKRSL E LA V+GN+ ++F A GXXXXXXXX +Q+V+MDEVDGM DRGG ELI +IK +R PII ICNDRQ +RSL N C DL+F+RP K +AKR+ +A +G+ + NA E LVE +GNDIRQ V H LQMW+ ++T+ +K + +KDK
Sbjct: 347 NPGARAVLLSGPPGIGKSTAALLVARAVGYQVQEMNASDTRSKRSLKETLAEVVGNRAITFFARAPGGGXXXXXXXXXTARQVVIMDEVDGMSSGDRGGNAELIRIIKTTRRPIICICNDRQKSSVRSLANSCLDLKFSRPNKQQVAKRLALIAAEQGLAAEPNALEYLVETSGNDIRQTV-HMLQMWANSPHGADGRLTFAAMKAAEATSQKDK 560
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S3JSX2_9STRA (Replication factor C subunit 1 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSX2_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.270e-56 Identity = 109/191 (57.07%), Postives = 136/191 (71.20%), Query Frame = 1
Query: 16 KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSS 588
K+NP A+AALLSG PG+GK++ A L+A+E GY V+ELNASD RSK+SL+E+L + L F A K+L++MDEVDG+ GSDRGG QELI LIK SRVPII ICNDRQ K++ L N C+DLR RP K TIAKR+ +A EG+D++ NAAE+L E GNDIRQ L+ALQMWS + S
Sbjct: 298 KENPNAKAALLSGPPGIGKTTLAHLIAKEHGYDVLELNASDARSKKSLTEQLGGTLDCPTLKFGAINAKDMTT-----KRLLIMDEVDGLSGSDRGGSQELIRLIKISRVPIICICNDRQSNKVKGLANSCFDLRCKRPMKQTIAKRIVLIANKEGLDLEANAAELLAENCGNDIRQ-CLNALQMWSTELS 482
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S3ZNL0_9STRA (Replication factor C subunit 1 n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNL0_9STRA) HSP 1 Score: 201 bits (510), Expect = 3.990e-56 Identity = 113/210 (53.81%), Postives = 142/210 (67.62%), Query Frame = 1
Query: 22 NPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMW--SRKSSKMTYMNLKGGISAIEKDKV 645
NP ARAALLSG PG+GKS+ A L+ + G+ V+E NASDTRSK+S+ LA +G L G R++ V+MDEVDG+ SDRGG LI LIK + PII ICNDRQ K++SL NHCYDLR RP K +AKR+ AVA EG+ ++ NAAE+LV++ GNDIRQ L+ALQMW S S K TY ++KG ISAI KD++
Sbjct: 412 NPSARAALLSGPPGIGKSTMAALLCEQRGFEVVEYNASDTRSKKSIEGGLADALGCGSLFGKKGGQR--------RRRCVIMDEVDGLSASDRGGSAALIKLIKTTATPIICICNDRQSPKVKSLANHCYDLRCKRPMKQIVAKRLVAVAAAEGLTLEQNAAELLVDSCGNDIRQ-CLNALQMWTQSNASGKATYGDMKGRISAISKDEM 612
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A1Z5JWY4_FISSO (Replication factor C subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWY4_FISSO) HSP 1 Score: 200 bits (509), Expect = 6.690e-56 Identity = 103/204 (50.49%), Postives = 141/204 (69.12%), Query Frame = 1
Query: 34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDKV 645
+AALLSG PG+GK++TATLVA+E G V+E NASD RSK++L+ + G++ + FT +K+ ++MDEVDGMG DR G+ ELI +IKKS+VPI+ ICNDRQ QK++SL+ +C DLR+ RP K IA R V + EG++V+ NAAE L E+ GNDIRQ VL+ LQMWSRK + + + +LK + I KD +
Sbjct: 415 KAALLSGPPGIGKTTTATLVAKEAGRDVLEFNASDVRSKKALTNVFGDITGSQTIDFTTQA----------KKRCIIMDEVDGMGAGDRSGMAELIQMIKKSKVPIVCICNDRQSQKLKSLIPYCLDLRYRRPTKNVIANRAVQVGQQEGLNVEQNAAEALAESCGNDIRQ-VLNCLQMWSRKGNSLKFKDLKERANDINKDDI 607 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15366.3767.1 >prot_E-fasciculatus_F_contig15366.3767.1 ID=prot_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=217bp PAAQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKback to top mRNA from alignment at E-fasciculatus_F_contig15366:6..2440+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15366.3767.1 ID=mRNA_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2435bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15366:6..2440+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15366:6..2440+ >mRNA_E-fasciculatus_F_contig15366.3767.1 ID=mRNA_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15366:6..2440+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |