mRNA_E-fasciculatus_F_contig15366.3767.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15366.3767.1
Unique NamemRNA_E-fasciculatus_F_contig15366.3767.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 7.550e-123
Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 1
Query:   13 GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDK 642
            GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQ VLHALQMWSRKSSKMTYMNLKGGISAIEKDK
Sbjct:  488 GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQ-VLHALQMWSRKSSKMTYMNLKGGISAIEKDK 696          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.930e-63
Identity = 119/219 (54.34%), Postives = 148/219 (67.58%), Query Frame = 1
Query:   34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGG----------------IQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDK 642
            RA L+SG PG+GK++ AT+VA+ +G+ V E NASDTRSK+S+ E L  V+ N VLSF +             K++++MDEVDGMGG DRGG                + ELI LI  ++VPII ICNDRQ  KIRSLVNHC D+RF RP K  IAKR+K VA+ EG+D+D NAAEML E+ GNDIRQ  LHA+QMWSR S  M YM +K G+ A+ KDK
Sbjct:  103 RAVLISGPPGIGKTTAATIVAKSLGFEVTEFNASDTRSKKSMEEGLKDVLSNTVLSFGSKAGSKPP------KRVIIMDEVDGMGGGDRGGRNVAEADVQMRLLARSMGELIKLIAITKVPIICICNDRQDTKIRSLVNHCIDMRFKRPVKTMIAKRMKEVAQKEGLDIDLNAAEMLSESVGNDIRQ-CLHAMQMWSRGSRTMAYMEVKDGLGAVSKDK 314          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN)

HSP 1 Score: 209 bits (532), Expect = 3.390e-60
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 1
Query:   16 KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKM---TYMNLKGGISAIEKDKV 645
            K+NPGA+AALLSG PG+GKSS A L+    G+ V+ELNASDTRS R++ E L   +G +V+S +              +++V+MDE+DG+ GSDRGG Q L+ LIK S  PII ICNDRQ  K+++L NHC+DLRF RP KVTIAKRV A+A  EG+ ++ NAAE+LVE+ GNDIRQ  L+ALQMW+    +    +Y  +K  +S I KD +
Sbjct:  170 KENPGAKAALLSGPPGIGKSSMAALLCAARGFDVVELNASDTRSARTVEETLGDALGCQVVSSSFAKKGAAPPSKKRLRRVVIMDEIDGLSGSDRGGSQALVKLIKSSSTPIICICNDRQSAKVKTLANHCFDLRFKRPMKVTIAKRVMAIAMKEGLTIEQNAAELLVESCGNDIRQ-CLNALQMWATSEGEAETCSYTAMKDRLSTISKDAI 381          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S2PS30_9STRA (Replication factor C subunit 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PS30_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.180e-59
Identity = 114/210 (54.29%), Postives = 148/210 (70.48%), Query Frame = 1
Query:   34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSK------MTYMNLKGGISAIEKDKV 645
            +AALLSG PG+GK++TATL+AR+ G  V+ELNASD RSK++L+E L  V G++VLSF              +K++++MDEVDGMG  DR G+ +LI +IK S+VPII ICNDRQ QK+RSLV +C DLR+ RP K TIA+R   + +MEGM V+ NAAE + E+ GNDIRQ VL+ LQMWS K +K      MTY +LK     I KD+V
Sbjct:  637 KAALLSGPPGIGKTTTATLIARQSGRDVLELNASDARSKKALTEALGDVTGSQVLSFANQSSKKHVQP---QKRVIIMDEVDGMGAGDRSGMAQLIQMIKNSKVPIICICNDRQSQKVRSLVQYCLDLRYQRPVKTTIARRAVEIGRMEGMVVEPNAAEAIAESCGNDIRQ-VLNCLQMWSCKKNKGGDSANMTYKDLKDRKGEINKDEV 842          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S4IHD5_9STRA (Replication factor C subunit 1 (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHD5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.260e-58
Identity = 120/225 (53.33%), Postives = 153/225 (68.00%), Query Frame = 1
Query:   34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSF--TANGXXXXXXXXGF--------RKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK-----------SSKMTYMNLKGGISAIEKDKV 645
            +AALLSG PG+GK++TATLVARE G  V+ELNASD RSK+SL+E L  V G++VL+F  +A G      XX          +K++++MDEVDGMG  DR G+ ELI +IKKS+VPII ICNDRQ QK+RSLV HC DLR+ RP K  IA+R   V +MEGM V+ NAAE + E+ GND+RQ VL+ LQMWS K           ++ +TY  LK    AI KD++
Sbjct:  654 KAALLSGPPGIGKTTTATLVARESGRDVLELNASDARSKKSLTENLGDVTGSQVLNFAPSAKGGKGKGGXXXXXXXXPPRKQKRVIIMDEVDGMGAGDRSGMSELIAMIKKSKVPIICICNDRQSQKVRSLVAHCLDLRYRRPVKTVIARRAVEVGRMEGMHVEPNAAEAIAESCGNDVRQ-VLNCLQMWSSKKRDGNSDAAAGNNDLTYKGLKDRRDAISKDEM 877          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: B8C9T1_THAPS (Replication factor C subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9T1_THAPS)

HSP 1 Score: 207 bits (527), Expect = 4.570e-58
Identity = 115/211 (54.50%), Postives = 151/211 (71.56%), Query Frame = 1
Query:   34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSF-TANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK------SSKMTYMNLKGGISAIEKDKV 645
            +AALLSG PG+GK++TATLVARE G  ++ELNASD RSK+SLS+ L  V G++VL+F T +G          +K+ ++MDEVDGMG  DR G+ ELI +IK S+VPII ICNDR  QK++SLV +C DLRF RP K TI +R   + ++EGM+V++NAAE + E+ GNDIRQ VL+ +QMWS K      SS +TY +LK   S I KD+V
Sbjct:  686 KAALLSGPPGIGKTTTATLVARESGRDLLELNASDARSKKSLSQALGDVTGSQVLNFRTGDGKVKHVA----QKRCIIMDEVDGMGAGDRSGMSELIQMIKNSKVPIICICNDRSSQKMKSLVQYCMDLRFQRPNKKTIGRRAVEIGRVEGMEVEENAAEAMSESCGNDIRQ-VLNCMQMWSCKKNEAGQSSSVTYKDLKDRQSDINKDEV 891          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO)

HSP 1 Score: 204 bits (519), Expect = 1.880e-57
Identity = 119/215 (55.35%), Postives = 149/215 (69.30%), Query Frame = 1
Query:   22 NPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTAN----GXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRK----SSKMTYMNLKGGISAIEKDK 642
            NPGARA LLSG PG+GKS+ A LVAR +GY V E+NASDTRSKRSL E LA V+GN+ ++F A     GXXXXXXXX   +Q+V+MDEVDGM   DRGG  ELI +IK +R PII ICNDRQ   +RSL N C DL+F+RP K  +AKR+  +A  +G+  + NA E LVE +GNDIRQ V H LQMW+        ++T+  +K   +  +KDK
Sbjct:  347 NPGARAVLLSGPPGIGKSTAALLVARAVGYQVQEMNASDTRSKRSLKETLAEVVGNRAITFFARAPGGGXXXXXXXXXTARQVVIMDEVDGMSSGDRGGNAELIRIIKTTRRPIICICNDRQKSSVRSLANSCLDLKFSRPNKQQVAKRLALIAAEQGLAAEPNALEYLVETSGNDIRQTV-HMLQMWANSPHGADGRLTFAAMKAAEATSQKDK 560          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S3JSX2_9STRA (Replication factor C subunit 1 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSX2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.270e-56
Identity = 109/191 (57.07%), Postives = 136/191 (71.20%), Query Frame = 1
Query:   16 KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSS 588
            K+NP A+AALLSG PG+GK++ A L+A+E GY V+ELNASD RSK+SL+E+L   +    L F A             K+L++MDEVDG+ GSDRGG QELI LIK SRVPII ICNDRQ  K++ L N C+DLR  RP K TIAKR+  +A  EG+D++ NAAE+L E  GNDIRQ  L+ALQMWS + S
Sbjct:  298 KENPNAKAALLSGPPGIGKTTLAHLIAKEHGYDVLELNASDARSKKSLTEQLGGTLDCPTLKFGAINAKDMTT-----KRLLIMDEVDGLSGSDRGGSQELIRLIKISRVPIICICNDRQSNKVKGLANSCFDLRCKRPMKQTIAKRIVLIANKEGLDLEANAAELLAENCGNDIRQ-CLNALQMWSTELS 482          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A7S3ZNL0_9STRA (Replication factor C subunit 1 n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNL0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.990e-56
Identity = 113/210 (53.81%), Postives = 142/210 (67.62%), Query Frame = 1
Query:   22 NPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMW--SRKSSKMTYMNLKGGISAIEKDKV 645
            NP ARAALLSG PG+GKS+ A L+  + G+ V+E NASDTRSK+S+   LA  +G   L     G          R++ V+MDEVDG+  SDRGG   LI LIK +  PII ICNDRQ  K++SL NHCYDLR  RP K  +AKR+ AVA  EG+ ++ NAAE+LV++ GNDIRQ  L+ALQMW  S  S K TY ++KG ISAI KD++
Sbjct:  412 NPSARAALLSGPPGIGKSTMAALLCEQRGFEVVEYNASDTRSKKSIEGGLADALGCGSLFGKKGGQR--------RRRCVIMDEVDGLSASDRGGSAALIKLIKTTATPIICICNDRQSPKVKSLANHCYDLRCKRPMKQIVAKRLVAVAAAEGLTLEQNAAELLVDSCGNDIRQ-CLNALQMWTQSNASGKATYGDMKGRISAISKDEM 612          
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Match: A0A1Z5JWY4_FISSO (Replication factor C subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWY4_FISSO)

HSP 1 Score: 200 bits (509), Expect = 6.690e-56
Identity = 103/204 (50.49%), Postives = 141/204 (69.12%), Query Frame = 1
Query:   34 RAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTYMNLKGGISAIEKDKV 645
            +AALLSG PG+GK++TATLVA+E G  V+E NASD RSK++L+     + G++ + FT             +K+ ++MDEVDGMG  DR G+ ELI +IKKS+VPI+ ICNDRQ QK++SL+ +C DLR+ RP K  IA R   V + EG++V+ NAAE L E+ GNDIRQ VL+ LQMWSRK + + + +LK   + I KD +
Sbjct:  415 KAALLSGPPGIGKTTTATLVAKEAGRDVLEFNASDVRSKKALTNVFGDITGSQTIDFTTQA----------KKRCIIMDEVDGMGAGDRSGMAELIQMIKKSKVPIVCICNDRQSQKLKSLIPYCLDLRYRRPTKNVIANRAVQVGQQEGLNVEQNAAEALAESCGNDIRQ-VLNCLQMWSRKGNSLKFKDLKERANDINKDDI 607          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15366.3767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI7.550e-12399.52Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A835YT94_9STRA1.930e-6354.34P-loop containing nucleoside triphosphate hydrolas... [more]
F0XZ23_AURAN3.390e-6052.11AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2PS30_9STRA9.180e-5954.29Replication factor C subunit 1 n=1 Tax=Skeletonema... [more]
A0A7S4IHD5_9STRA2.260e-5853.33Replication factor C subunit 1 (Fragment) n=2 Tax=... [more]
B8C9T1_THAPS4.570e-5854.50Replication factor C subunit 1 n=1 Tax=Thalassiosi... [more]
A0A812KXV0_9DINO1.880e-5755.35Replication factor C subunit 1 n=1 Tax=Symbiodiniu... [more]
A0A7S3JSX2_9STRA1.270e-5657.07Replication factor C subunit 1 (Fragment) n=1 Tax=... [more]
A0A7S3ZNL0_9STRA3.990e-5653.81Replication factor C subunit 1 n=3 Tax=Pelagomonas... [more]
A0A1Z5JWY4_FISSO6.690e-5650.49Replication factor C subunit 1 n=2 Tax=Fistulifera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15366contigE-fasciculatus_F_contig15366:6..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue1.7e-103
Seed eggNOG ortholog2880.D8LND0
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15366.3767.1prot_E-fasciculatus_F_contig15366.3767.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15366 6..2440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.5562987-CDS-E-fasciculatus_F_contig15366:5..1971622928013.5562987-CDS-E-fasciculatus_F_contig15366:5..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 6..197 +
1695995788.941707-CDS-E-fasciculatus_F_contig15366:5..1971695995788.941707-CDS-E-fasciculatus_F_contig15366:5..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 6..197 +
1622928013.5707433-CDS-E-fasciculatus_F_contig15366:1075..12721622928013.5707433-CDS-E-fasciculatus_F_contig15366:1075..1272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 1076..1272 +
1695995788.9567518-CDS-E-fasciculatus_F_contig15366:1075..12721695995788.9567518-CDS-E-fasciculatus_F_contig15366:1075..1272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 1076..1272 +
1622928013.5859337-CDS-E-fasciculatus_F_contig15366:1802..19591622928013.5859337-CDS-E-fasciculatus_F_contig15366:1802..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 1803..1959 +
1695995788.9673622-CDS-E-fasciculatus_F_contig15366:1802..19591695995788.9673622-CDS-E-fasciculatus_F_contig15366:1802..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 1803..1959 +
1622928013.5969691-CDS-E-fasciculatus_F_contig15366:2335..24401622928013.5969691-CDS-E-fasciculatus_F_contig15366:2335..2440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 2336..2440 +
1695995788.9760704-CDS-E-fasciculatus_F_contig15366:2335..24401695995788.9760704-CDS-E-fasciculatus_F_contig15366:2335..2440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15366 2336..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15366.3767.1

>prot_E-fasciculatus_F_contig15366.3767.1 ID=prot_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=217bp
PAAQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSK
RSLSEELASVIGNKVLSFTANGGGGGTTSGGFRKQLVVMDEVDGMGGSDR
GGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIA
KRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQQVLHALQMWSRKSSKMTY
MNLKGGISAIEKDKVT*
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mRNA from alignment at E-fasciculatus_F_contig15366:6..2440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15366.3767.1 ID=mRNA_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2435bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15366:6..2440+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCTGCTCAGGGTAAAGACAACCCGGGTGCGCGCGCGGCCCTCCTGTC GGGTGTGCCCGGGGTGGGCAAGTCGTCAACGGCGACACTGGTGGCCAGAG AGATGGGGTACCACGTGATGGAGCTCAACGCCAGCGACACCCGCAGCAAG CGGTCGCTGTCCGAGGAGCTTGCGTCGGTCATTGGCAACAAGGTGCGCGC TGCACACGTTGATGGATGGGTGGACAGGCAGAGGGAAGTGGGTGTCGTGT TGTTTTTGCGGGGAAGGGATCGAAAGCTTTGTAAATGTATGCTGTCGCCG GTGATCGGCAACAAGGCGTGCGCTACACGCACTGATGCTGATGGGTGGGT GGACAGGCAGAGGGACGTGGGTGTCGTCATCACGATTTGTGCGGTGCTTC GGTTGACATGGGGTCGAAAGCTTATCTAAACGGAAAAAAATGCCTGCTGG CGTCGGTGATTGGTAACGAGGCTTGCGCTACCCATGTTGATGGATGGGTG GACAGGCAGACAGATGGGGGTGTCGCCATCATGGTTGGTGCGGTGCTTGA GCTGGTGTATTGCAGTTCAGGCATCGACAGCTTGTCTAAACAGAAGAAAG GCCTGCTGGCATCGGTGAGCGACATGAACGTTTGCGCTACACATGTTCAT GGATGGGTGGACGGGCGAACAGGTAGACAGGGTTCGTGCGGTGCTACAGT TTATGTTTTTTCAGTGAAGGGTGTCTTGTCGGAAAAAATAGCCTGCTAGC GTGACCGCTGCATGGAGCGGTCGAAAGCTGCTGGACACACAGATGGGACA GGTTTCGAACGTACAGTTCCGGGTATTCTTTTTCACATCGCCCTGCACGG CCTTCTAAGTGTTTTCACCCGTACGTTCAAAGCGGTGGACCAGTGCGGAT GTTTTAGAAGGTACCGAGCAGAGGCCGGACCGGACCGATTTTCAATGTCA AGACGACGATGACAACAACAACACCAAACCGCAGCGGCAACAACTTACTT AAGTAACCGTTCCGATCTGTTCACCACACTTAACTCTTCCTTCCGCAACA ACATTCTTAAACGAAAACAGGTGCTGTCGTTCACGGCGAACGGCGGAGGC GGCGGGACAACGAGCGGCGGGTTCCGCAAGCAGCTGGTGGTGATGGACGA GGTGGACGGGATGGGGGGATCGGACAGGGGCGGCATCCAGGAGCTGATCC TCCTCATCAAGAAGAGCAGGGTGCCGATCATCGCCATCTGCAATGACCGC CAGCACCAAAAGATCAGGTACGGTGTCCGGCACCGAAGGGTTAGGTACCA CCATGTATACTCAGCACCACAAGATTAGGCGCTACCAGCTATATTTATAT TGTGTGTTGTGCGGTTTTTGTCTGTCGAGAAAGCGTTTGTCGACCGGCAC GCTGTCTGACGAACGTGCGTGTGTGCGTGTGTGTTGTGTCTTTACTATTT GCTGTAACTGCGCTAACCGGCTGGCCAATGGAGAGACATCGGTCTTAGTG CCGGAACAATATAGTGTGTGTGTTTTGCATGGACCGCGCTAACCGGTTGA CCAAAAGACAACGTGTCAGCCTCAATTGTGGCTTATAACGGGAAGATGCT TCAAACTGCCATAATCTGGGTTCCTGTGAGCGGGGGGGGCTAGGCTTTTC TCCGGATGAACAAAAATAACGTGCGAAATATTATGTGTCTCGTGAGACAG CGGCCAACCACACTAAAGGAAATGATCCCACGTTGCCCCCTTTTTGTCCC CCCTCCCCCGGCGAACGGCCGACCACCGCCGCCACAAAAAACAACAGGTC TTTGGTGAACCACTGCTACGACCTGCGGTTCGCGAGACCGCAGAAGGTGA CGATCGCCAAGCGGGTCAAGGCCGTGGCGAAGATGGAGGGAATGGACGTC GACGACAACGCGGCGGAGATGCTGGTGGAGGCTAACGGGAACGACATCCG GCAGGTACGTACGTCGGTTCAAGACGCGGTGGGGCCTGCTTGCTTGCTTG CTTGCTTGCTTGCGGGGTAACTTAGGGACGAGGGTTGGAAGATGGGGGTT TGTGCACGAGTGGCAATAGGTGAAGGGGCTATATATGCAGGATGTTCTTT ATCAACAGAGCAATCGTCTGTCCGGAGCCCCTTGGGATTTGCCGGTCTTT GTTGTTATTTCTGTCTAGTTTGTGTCTTCTTTCTGGGCGGTGCTGGTTGT GTCATGACTGCCTGCCTAGCCACGTCTGTCGTCCCACGCTTAGCCCCTCT CTCCCTTGTTTCCCGCTGCGCACGCCTCCTCGGCCGCCACCCGCTCACGT CTGTGCTTCTTCTGTTGCTCCGGCCTCGAGCAGGTGTTGCACGCGCTTCA GATGTGGAGCCGGAAGTCTTCGAAGATGACCTACATGAACCTCAAGGGAG GCATTTCTGCAATCGAGAAGGACAAGGTAACCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15366:6..2440+

>mRNA_E-fasciculatus_F_contig15366.3767.1 ID=mRNA_E-fasciculatus_F_contig15366.3767.1|Name=mRNA_E-fasciculatus_F_contig15366.3767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15366:6..2440+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCTGCTCAGGGTAAAGACAACCCGGGTGCGCGCGCGGCCCTCCTGTC
GGGTGTGCCCGGGGTGGGCAAGTCGTCAACGGCGACACTGGTGGCCAGAG
AGATGGGGTACCACGTGATGGAGCTCAACGCCAGCGACACCCGCAGCAAG
CGGTCGCTGTCCGAGGAGCTTGCGTCGGTCATTGGCAACAAGCCCGCTGC
TCAGGGTAAAGACAACCCGGGTGCGCGCGCGGCCCTCCTGTCGGGTGTGC
CCGGGGTGGGCAAGTCGTCAACGGCGACACTGGTGGCCAGAGAGATGGGG
TACCACGTGATGGAGCTCAACGCCAGCGACACCCGCAGCAAGCGGTCGCT
GTCCGAGGAGCTTGCGTCGGTCATTGGCAACAAGGTGCTGTCGTTCACGG
CGAACGGCGGAGGCGGCGGGACAACGAGCGGCGGGTTCCGCAAGCAGCTG
GTGGTGATGGACGAGGTGGACGGGATGGGGGGATCGGACAGGGGCGGCAT
CCAGGAGCTGATCCTCCTCATCAAGAAGAGCAGGGTGCCGATCATCGCCA
TCTGCAATGACCGCCAGCACCAAAAGATCAGGTGCTGTCGTTCACGGCGA
ACGGCGGAGGCGGCGGGACAACGAGCGGCGGGTTCCGCAAGCAGCTGGTG
GTGATGGACGAGGTGGACGGGATGGGGGGATCGGACAGGGGCGGCATCCA
GGAGCTGATCCTCCTCATCAAGAAGAGCAGGGTGCCGATCATCGCCATCT
GCAATGACCGCCAGCACCAAAAGATCAGGTCTTTGGTGAACCACTGCTAC
GACCTGCGGTTCGCGAGACCGCAGAAGGTGACGATCGCCAAGCGGGTCAA
GGCCGTGGCGAAGATGGAGGGAATGGACGTCGACGACAACGCGGCGGAGA
TGCTGGTGGAGGCTAACGGGAACGACATCCGGCAGGTCTTTGGTGAACCA
CTGCTACGACCTGCGGTTCGCGAGACCGCAGAAGGTGACGATCGCCAAGC
GGGTCAAGGCCGTGGCGAAGATGGAGGGAATGGACGTCGACGACAACGCG
GCGGAGATGCTGGTGGAGGCTAACGGGAACGACATCCGGCAGCAGGTGTT
GCACGCGCTTCAGATGTGGAGCCGGAAGTCTTCGAAGATGACCTACATGA
ACCTCAAGGGAGGCATTTCTGCAATCGAGAAGGACAAGGTAACCTAGCAG
GTGTTGCACGCGCTTCAGATGTGGAGCCGGAAGTCTTCGAAGATGACCTA
CATGAACCTCAAGGGAGGCATTTCTGCAATCGAGAAGGACAAGGTAACCT
AG
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