mRNA_E-fasciculatus_F_contig15360.3765.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15360.3765.1
Unique NamemRNA_E-fasciculatus_F_contig15360.3765.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15360.3765.1 vs. uniprot
Match: D7FKR2_ECTSI (Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.290e-39
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 QVDILAPRMEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 228
            +VD+LAPRMEEFLGFVETM+EVAEASDGAFATLNCGSDFLREDSA+RFSNVAA+MENMPIEEGNYLRVPKVGEDEG
Sbjct:   88 EVDVLAPRMEEFLGFVETMKEVAEASDGAFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDEG 163
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BLAST of mRNA_E-fasciculatus_F_contig15360.3765.1 vs. uniprot
Match: A0A6H5KRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS3_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.970e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:   25 MEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 228
            MEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG
Sbjct:    1 MEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 68
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BLAST of mRNA_E-fasciculatus_F_contig15360.3765.1 vs. uniprot
Match: A0A836CJS8_9STRA (C subunit of glutamyl-tRNA and/or aspartyl-tRNA amidotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.020e-8
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    1 QVDILAPRMEEFLGFVETMEEVAEASDGAFATLNCGSD------FLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDE 225
            + + L PR+  FLGFV  M+E A A+DG    +    +      FLR D A +F N  A+  NMP+ EG YLRVPKVG +E
Sbjct:   73 EAEQLVPRVRSFLGFVAAMDE-AGAADGDAPPMGDSREGLGEGGFLRSDGAVKFENADAIAANMPLREGEYLRVPKVGAEE 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15360.3765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKR2_ECTSI1.290e-3993.42Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amido... [more]
A0A6H5KRS3_9PHAE7.970e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJS8_9STRA2.020e-844.44C subunit of glutamyl-tRNA and/or aspartyl-tRNA am... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15360contigE-fasciculatus_F_contig15360:246..1182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
Ec32 orthologEc-21_001810.1
Exons1
Model size937
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15360.3765.1prot_E-fasciculatus_F_contig15360.3765.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15360 270..476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.3861158-UTR-E-fasciculatus_F_contig15360:245..2691622928013.3861158-UTR-E-fasciculatus_F_contig15360:245..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15360 246..269 +
1695995788.8537908-UTR-E-fasciculatus_F_contig15360:245..2691695995788.8537908-UTR-E-fasciculatus_F_contig15360:245..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15360 246..269 +
1622928013.411584-UTR-E-fasciculatus_F_contig15360:476..11821622928013.411584-UTR-E-fasciculatus_F_contig15360:476..1182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15360 477..1182 +
1695995788.8693678-UTR-E-fasciculatus_F_contig15360:476..11821695995788.8693678-UTR-E-fasciculatus_F_contig15360:476..1182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15360 477..1182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.3999236-CDS-E-fasciculatus_F_contig15360:269..4761622928013.3999236-CDS-E-fasciculatus_F_contig15360:269..476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15360 270..476 +
1695995788.8615558-CDS-E-fasciculatus_F_contig15360:269..4761695995788.8615558-CDS-E-fasciculatus_F_contig15360:269..476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15360 270..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15360.3765.1

>prot_E-fasciculatus_F_contig15360.3765.1 ID=prot_E-fasciculatus_F_contig15360.3765.1|Name=mRNA_E-fasciculatus_F_contig15360.3765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENM
PIEEGNYLRVPKVGEDEG*
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mRNA from alignment at E-fasciculatus_F_contig15360:246..1182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15360.3765.1 ID=mRNA_E-fasciculatus_F_contig15360.3765.1|Name=mRNA_E-fasciculatus_F_contig15360.3765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=937bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15360:246..1182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTGACATCCTGGCACCGCGAATGGAGGAGTTCCTGGGCTTTGTGGA
AACGATGGAGGAGGTCGCCGAAGCTAGTGACGGCGCTTTCGCCACGTTAA
ACTGCGGTAGTGATTTTCTGAGAGAAGACTCGGCAGAGAGGTTTTCGAAC
GTGGCAGCTGTCATGGAGAATATGCCCATCGAGGAAGGGAATTATCTACG
TGTCCCGAAAGTCGGAGAAGACGAGGGATAGATTCATAGAGAAGACACGC
AAACGTGTAGCCCGCCGATGTCAGCCAGTTTGAGAGGTTTGCGTTGTGAC
CATCTTCGACGGAAATTGCCCTCTTTTATTTTTTTCTAGGCAGTAGAAGG
TTTCGCCGCTTGGATTATTGGGGCGTGTTGGAAGTCCTCCGGCAAGAACC
GAGTTTCCCAATTGCTTTTTCCGCGCCACGGAAGCGGAGTGTAGCTTCTC
CGCCGGTTGTTCCACGCGCCCCCGGGCTCTTCCTCTTTCGTTTGAAACGC
ATGGACCAAGGTAGGTCAGGCGTTTGTGCGAACACACGAGCGGTAAGATA
GGCACTCGCAAGAAGGGGCTTTGCGCAGTCGTAGTGCTGCGTTGTTTGTA
TGCGCTGGTGGTTAAACGGCAATCCTGAGATCTTGCGCAACAAACTGGAA
CGAACGCGGAGGGTACGGTGGATGTCTTGAGATGTGCGCTTGTTCAATGT
CGAGAGCCATATCCTGATCAGCACGTGTGGCAAGTGCACTCGCCTACGAA
GTGCAATCTGAATTTCTGAATTTCACAGCTGGGTGATTGTAGTCAAGTGA
CCATACACCTGGTAGAAAATATGTGTATCCTCGGTCTACAGTAGACGTCT
GGTGACGAGCAGCACGTTGATCTGCCATGTTTTCGCGTTTCGATACGAAC
GCACGCAGAGCGGTAGTAGAGAGAGAACGACCCCCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15360:246..1182+

>mRNA_E-fasciculatus_F_contig15360.3765.1 ID=mRNA_E-fasciculatus_F_contig15360.3765.1|Name=mRNA_E-fasciculatus_F_contig15360.3765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15360:246..1182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGTTCCTGGGCTTTGTGGAAACGATGGAGGAGGTCGCCGAAGC
TAGTGACGGCGCTTTCGCCACGTTAAACTGCGGTAGTGATTTTCTGAGAG
AAGACTCGGCAGAGAGGTTTTCGAACGTGGCAGCTGTCATGGAGAATATG
CCCATCGAGGAAGGGAATTATCTACGTGTCCCGAAAGTCGGAGAAGACGA
GGGATAGATGGAGGAGTTCCTGGGCTTTGTGGAAACGATGGAGGAGGTCG
CCGAAGCTAGTGACGGCGCTTTCGCCACGTTAAACTGCGGTAGTGATTTT
CTGAGAGAAGACTCGGCAGAGAGGTTTTCGAACGTGGCAGCTGTCATGGA
GAATATGCCCATCGAGGAAGGGAATTATCTACGTGTCCCGAAAGTCGGAG
AAGACGAGGGATAG
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