mRNA_E-fasciculatus_F_contig1536.3764.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1536.3764.1 vs. uniprot
Match: D7G7N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N8_ECTSI) HSP 1 Score: 919 bits (2375), Expect = 0.000e+0 Identity = 515/612 (84.15%), Postives = 541/612 (88.40%), Query Frame = 1
Query: 436 DLPDTASADLHRGLRRPALLLALAGIVQDNEAGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQGLLKPASTLAAIADHRTQELVFEALYRLWKASLLRRVWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPSGGDGEGGECDPEEIEKGWLSPPSSFPVEALVQVTEWRGLGLRDRIGEAHHLDIGGDSISIQVYPKASPGKTSGTPTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENTATANCTIIIQLEGGSQMFSRFRQAIAALKSKVPDAAKEAKPTTGSKSPKGSSALEHVEVFKPADEVEGAQGVEEALDEDGEEESQTNRGKRPRAVCGLAGSVSNRSRVTPRRDGRSASYREGEDKT-TREKASSGRKAKSAHKAPLDTXXXXXXXXXAAA-RVNTSTESSAKKKRITDHAKDEVPTPAAGSFRRIAHGT-VTAHDSSHQARESSKGSSRKFSDGGDATAALDDXXXXXXGDSWMAPRRHLDLAPAPATAKRK---ARAETGSRHKDGSGKVRAATGDGGSALRGGSTEWDISDDDGGGEGHREKGGGGR----QVTPGSKA 2241
DLPDTASA+LHRGLRRPALLLAL GIVQDN+AGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQG LKPAS LA+IADHRTQELVFEALYRLWK VWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRP+G DGE GE DPEE EKGWLSPPSSFPVEAL+QVTEWRGLGLRDR+GEAHHLDIGGDSISIQVYPKASPGKTSGT TGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEEN ATANCTIIIQLEGGSQMFSRFRQAIAALKSKVPD AKEAKP+ GSKS KGSSALEH EVFKP+DE+EGA+GVEE LD+D EE +QTN KRPRAVCGLAGSVSNRSR+TPR+DGR S R GED+T +REKASSGRKAK AH+APL+T AAA RVNTST SSA+KKRITDHAK EVPTPAAGSFRRIA G VTAHDSS QARESS+GSSR FSD DATAA DD GDSWMAPRRHLDLAPA ATAKRK AR +TGSR++DGSGKVRAA GDGGS+LRGGSTEWDIS+DDGG EGH EKG GR +VTP SKA
Sbjct: 11 DLPDTASAELHRGLRRPALLLALVGIVQDNKAGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQGFLKPASMLASIADHRTQELVFEALYRLWK------VWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNGDDGEDGEYDPEEDEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQVYPKASPGKTSGTSTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENAATANCTIIIQLEGGSQMFSRFRQAIAALKSKVPDVAKEAKPSRGSKSTKGSSALEHAEVFKPSDELEGAEGVEEDLDDDDEEGTQTNHRKRPRAVCGLAGSVSNRSRITPRKDGRRDSDRGGEDQTASREKASSGRKAKRAHRAPLNTPTDSPVSAPAAAARVNTSTASSAEKKRITDHAKGEVPTPAAGSFRRIAQGAAVTAHDSSLQARESSEGSSRSFSDDADATAARDDDG----GDSWMAPRRHLDLAPASATAKRKDKQARTKTGSRNRDGSGKVRAAKGDGGSSLRGGSTEWDISEDDGGDEGHCEKGSAGRHRLEEVTPRSKA 612
BLAST of mRNA_E-fasciculatus_F_contig1536.3764.1 vs. uniprot
Match: A0A6H5LAM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAM6_9PHAE) HSP 1 Score: 544 bits (1402), Expect = 2.170e-185 Identity = 298/390 (76.41%), Postives = 313/390 (80.26%), Query Frame = 1
Query: 583 SSPGLWKELAKEVRSSKTLLQGLLKPASTLAAIADHRTQELVFEALYRLWKASLLRR----------------------------------------------------VWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPSGGDGEGGECDPEEIEKGWLSPPSSFPVEALVQVTEWRGLGLRDRIGEAHHLDIGGDSISIQVYPKASPGKTSGTPTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENTATANCTIIIQLEGGSQMFSRFRQAIAALKSKVPDAAKEAKPTTGSKSPKGSSALEHVEVFKPADEVEGAQGVEEALDEDGEEESQTNRGKRPRAVCGLAGSVSNRS 1596
SSPGLWKELAKEVRSSKTLLQG LK ASTLA+IADHRTQELVFEALYRLWKASLLRR VWKKQRGGPPQL PSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRP+ D + E DP+E EKGWLSPPSSFPVEAL+QVTEWRGLGLRDR+GEAHHLDIGGDSISIQVYPKASPGK+SGT TGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEEN ATANCT+IIQLEGGSQMF+RFRQAIAALKSKVPD A EAKP+TGSKS KGS ALEH EVFKP+DEVEGA+GVE L +D EEESQTN KRPRA CGLA SVS+R+
Sbjct: 22 SSPGLWKELAKEVRSSKTLLQGFLKSASTLASIADHRTQELVFEALYRLWKASLLRRGTCASDRAPRFPKVQRQQARKYRQGEKEDAKLSPICSTVECAPDNPERILPKVWKKQRGGPPQLLPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNKNDDDDAEYDPQEGEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQVYPKASPGKSSGTSTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENAATANCTVIIQLEGGSQMFNRFRQAIAALKSKVPDVANEAKPSTGSKSTKGSLALEHAEVFKPSDEVEGAEGVEGNLGDDDEEESQTNHRKRPRAACGLASSVSSRA 411
BLAST of mRNA_E-fasciculatus_F_contig1536.3764.1 vs. uniprot
Match: A0A6H5L3H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H8_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.280e-39 Identity = 113/151 (74.83%), Postives = 120/151 (79.47%), Query Frame = 1
Query: 1834 AAGSFRRIAHGT-VTAHDSSHQARESSKGSSRKFSDGGDATAALDDXXXXXXGDSWMAPRRHLDLAPAPATAKRKARAETGSRHKDGSGKVRAATGDGGSALRGGSTEWDISDDDGGGEGHREKGGGGR----QVTPGSKAKAKPRAREAG 2271
AAGSFRRIA G VTAHDSS QARESS GS + SD XXXXXXGDSWMAPRRHLDLAPA ATAKRKAR ETGSR++D SGKVRAATGDGGSALRGGSTEWDIS+DDGG EG+ EKG GR +VTP SKAKAKPRA +AG
Sbjct: 22 AAGSFRRIAQGAAVTAHDSSLQARESSGGSFKSISD----XXXXXXXXXXXXGDSWMAPRRHLDLAPASATAKRKARVETGSRNRDSSGKVRAATGDGGSALRGGSTEWDISEDDGGDEGYCEKGSDGRHRLEEVTPRSKAKAKPRATKAG 168 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1536.3764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1536.3764.1 >prot_E-fasciculatus_F_contig1536.3764.1 ID=prot_E-fasciculatus_F_contig1536.3764.1|Name=mRNA_E-fasciculatus_F_contig1536.3764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=757bp SSRPCLHIEVIEGPVQQAACTSQALLFACFSVQRRPAVSRPERVMNLFAPback to top mRNA from alignment at E-fasciculatus_F_contig1536:3..10970- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1536.3764.1 ID=mRNA_E-fasciculatus_F_contig1536.3764.1|Name=mRNA_E-fasciculatus_F_contig1536.3764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=10968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1536:3..10970- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1536:3..10970- >mRNA_E-fasciculatus_F_contig1536.3764.1 ID=mRNA_E-fasciculatus_F_contig1536.3764.1|Name=mRNA_E-fasciculatus_F_contig1536.3764.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1536:3..10970- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |