mRNA_E-fasciculatus_F_contig15355.3763.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15355.3763.1
Unique NamemRNA_E-fasciculatus_F_contig15355.3763.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15355.3763.1 vs. uniprot
Match: D7FZI9_ECTSI (BUB1 N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.730e-5
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = -2 
Query:    3 EDFAWETSKENVMPLKRGRKVDA 71
            EDFAWETSKENVMPLKRGRKVDA
Sbjct:   15 EDFAWETSKENVMPLKRGRKVDA 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15355.3763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZI9_ECTSI2.730e-5100.00BUB1 N-terminal domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15355contigE-fasciculatus_F_contig15355:952..1332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.091529-CDS-E-fasciculatus_F_contig15355:951..13321622928013.091529-CDS-E-fasciculatus_F_contig15355:951..1332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15355 952..1332 +
1695995788.7012954-CDS-E-fasciculatus_F_contig15355:951..13321695995788.7012954-CDS-E-fasciculatus_F_contig15355:951..1332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15355 952..1332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15355.3763.1prot_E-fasciculatus_F_contig15355.3763.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15355 952..1332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15355.3763.1

>prot_E-fasciculatus_F_contig15355.3763.1 ID=prot_E-fasciculatus_F_contig15355.3763.1|Name=mRNA_E-fasciculatus_F_contig15355.3763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
MASTLRPLFRGMTFSLDVSHAKSSPPPPPPPSLPPDSAADVVGCSSTVDG
APAVAAVVVDGSSRPSWSGSNAGVAAAGVVLISPALFPETVANVWLPRPA
TVRSNLYSSSMCCLIPALAPAPSLNLR
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mRNA from alignment at E-fasciculatus_F_contig15355:952..1332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15355.3763.1 ID=mRNA_E-fasciculatus_F_contig15355.3763.1|Name=mRNA_E-fasciculatus_F_contig15355.3763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15355:952..1332+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATCCACCTTGCGCCCTCTCTTCAGGGGCATGACGTTCTCCTTGGA
CGTCTCCCACGCGAAGTCCTCGCCGCCACCACCACCACCACCATCCCTCC
CCCCCGACTCAGCAGCAGACGTTGTTGGCTGCTCCTCTACTGTCGACGGA
GCTCCAGCGGTAGCAGCAGTAGTAGTAGATGGCTCCTCCCGCCCATCATG
GTCTGGTTCGAATGCCGGCGTTGCGGCTGCTGGTGTTGTGCTCATTTCTC
CGGCCCTTTTCCCGGAAACCGTAGCCAACGTTTGGTTGCCGCGACCGGCA
ACGGTGCGATCGAACCTCTACAGTAGCTCTATGTGCTGCTTGATCCCTGC
GCTAGCTCCTGCTCCCTCGCTGAATCTGCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15355:952..1332+

>mRNA_E-fasciculatus_F_contig15355.3763.1 ID=mRNA_E-fasciculatus_F_contig15355.3763.1|Name=mRNA_E-fasciculatus_F_contig15355.3763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15355:952..1332+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATCCACCTTGCGCCCTCTCTTCAGGGGCATGACGTTCTCCTTGGA
CGTCTCCCACGCGAAGTCCTCGCCGCCACCACCACCACCACCATCCCTCC
CCCCCGACTCAGCAGCAGACGTTGTTGGCTGCTCCTCTACTGTCGACGGA
GCTCCAGCGGTAGCAGCAGTAGTAGTAGATGGCTCCTCCCGCCCATCATG
GTCTGGTTCGAATGCCGGCGTTGCGGCTGCTGGTGTTGTGCTCATTTCTC
CGGCCCTTTTCCCGGAAACCGTAGCCAACGTTTGGTTGCCGCGACCGGCA
ACGGTGCGATCGAACCTCTACAGTAGCTCTATGTGCTGCTTGATCCCTGC
GCTAGCTCCTGCTCCCTCGCTGAATCTGCGTATGGCATCCACCTTGCGCC
CTCTCTTCAGGGGCATGACGTTCTCCTTGGACGTCTCCCACGCGAAGTCC
TCGCCGCCACCACCACCACCACCATCCCTCCCCCCCGACTCAGCAGCAGA
CGTTGTTGGCTGCTCCTCTACTGTCGACGGAGCTCCAGCGGTAGCAGCAG
TAGTAGTAGATGGCTCCTCCCGCCCATCATGGTCTGGTTCGAATGCCGGC
GTTGCGGCTGCTGGTGTTGTGCTCATTTCTCCGGCCCTTTTCCCGGAAAC
CGTAGCCAACGTTTGGTTGCCGCGACCGGCAACGGTGCGATCGAACCTCT
ACAGTAGCTCTATGTGCTGCTTGATCCCTGCGCTAGCTCCTGCTCCCTCG
CTGAATCTGCGT
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