mRNA_E-fasciculatus_F_contig15352.3762.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15352.3762.1
Unique NamemRNA_E-fasciculatus_F_contig15352.3762.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15352.3762.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 2.450e-143
Identity = 255/305 (83.61%), Postives = 267/305 (87.54%), Query Frame = 1 
Query:    1 LCRVATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVEAGNVVGGEPRRGVPEPAQP-AQPESAQPEPGGRRRSLLKAFQRTGRDE-PWQFVGGAGAGAGGDDGAGLVEVDALTDALFVRGAHLRHACALLRNAGTSGRATSRRLPMSYAGDGSKDGTRSDFVDGQREEXXXXXXXXXXXXXXXXEISPDRHRRRRATTMAKTTGNEAAAANSAMSFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGDDNLGNFEASVPGSQFLPWECLSRSGLEPVLLSVTDLRDLRAIK 909
            L R A ATGVEGVFGVRGWQRTQDAPRPKRQRRGLLV++G VVGGEPRR  PEPAQP  +PE      GG RRSLLKAF+RTGRDE PWQFVGGAGAGA  + GAGLVEVDALTDALFVRG HLRHACALLRNAGTSGRA  RRL +S AGDG ++ T SDFVDGQR+ XXXXXXXXXXXXX    ISPDR RRR   TMAKTTGNEAA  NSA+SFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGDDNLG+FEASVPGS+FLPWECLSRSGLEPVLLSVTDLRDLRAIK
Sbjct:  335 LSRAAAATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRDAPEPAQPDGEPEGETA--GGGRRSLLKAFKRTGRDEKPWQFVGGAGAGA--ETGAGLVEVDALTDALFVRGTHLRHACALLRNAGTSGRAAGRRLGVSSAGDGGEEET-SDFVDGQRQXXXXXXXXXXXXXXG---ISPDRRRRR--ATMAKTTGNEAA--NSAISFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGDDNLGSFEASVPGSEFLPWECLSRSGLEPVLLSVTDLRDLRAIK 627
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BLAST of mRNA_E-fasciculatus_F_contig15352.3762.1 vs. uniprot
Match: A0A6H5KY98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 4.100e-123
Identity = 239/327 (73.09%), Postives = 254/327 (77.68%), Query Frame = 1 
Query:    1 LCRVATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVEAGNVVGGEPRRGVPEPAQP-AQPESAQPEPGGRRRSLLKAFQRTGRDE-PWQFVGGAGAGAGGDDGAGLVEVDALTDALFVRGAHLRHACALLRNAGTSGRATSRRLPMSYAGDGSKDGTRSDFVDGQREEXXXXXXXXXXXXXXXXEISPDRHRRRRA----------------------TTMAKTTGNEAAAANSAMSFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGDDNLGNFEASVPGSQFLPWECLSRSGLEPVLLSVTDLRDLRAIK 909
            L R A+ATGV GVFGVRGWQRTQDAPRPKRQRRGLL+++G  VGGEPR  VPEPAQP  +PE      GGR R LLKAF+RT RDE PW FVGGA AGA  D  A LVEVDALTDALFVRGAHLRHACALLR+AGTSGRAT RRL +S AGDG ++ TR  +VDGQ + XXXXXXXXXXXXXXXX                                   TMAKTTGNEAA  NSAMSFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGD+NLG+FEASVPGS FLPWECLSRSGLEPVLLSVTDL+DLRAIK
Sbjct:  314 LYRAASATGVGGVFGVRGWQRTQDAPRPKRQRRGLLIQSGGGVGGEPRSDVPEPAQPDGEPEGETA--GGRGRRLLKAFKRTRRDENPWHFVGGASAGAKAD--ASLVEVDALTDALFVRGAHLRHACALLRSAGTSGRATGRRLRVSSAGDGGEEETRG-YVDGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATMAKTTGNEAA--NSAMSFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKVRWSWGGGKGDENLGSFEASVPGSGFLPWECLSRSGLEPVLLSVTDLKDLRAIK 633
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15352.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV6_ECTSI2.450e-14383.61Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A6H5KY98_9PHAE4.100e-12373.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15352contigE-fasciculatus_F_contig15352:147..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size909
Cds size909
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15352.3762.1prot_E-fasciculatus_F_contig15352.3762.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15352 147..3024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.978469-CDS-E-fasciculatus_F_contig15352:146..2541622928012.978469-CDS-E-fasciculatus_F_contig15352:146..254Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 147..254 -
1695995788.6538637-CDS-E-fasciculatus_F_contig15352:146..2541695995788.6538637-CDS-E-fasciculatus_F_contig15352:146..254Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 147..254 -
1622928012.9961665-CDS-E-fasciculatus_F_contig15352:1047..13221622928012.9961665-CDS-E-fasciculatus_F_contig15352:1047..1322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 1048..1322 -
1695995788.6636252-CDS-E-fasciculatus_F_contig15352:1047..13221695995788.6636252-CDS-E-fasciculatus_F_contig15352:1047..1322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 1048..1322 -
1622928013.0107-CDS-E-fasciculatus_F_contig15352:1397..15681622928013.0107-CDS-E-fasciculatus_F_contig15352:1397..1568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 1398..1568 -
1695995788.6722019-CDS-E-fasciculatus_F_contig15352:1397..15681695995788.6722019-CDS-E-fasciculatus_F_contig15352:1397..1568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 1398..1568 -
1622928013.0273583-CDS-E-fasciculatus_F_contig15352:2193..24301622928013.0273583-CDS-E-fasciculatus_F_contig15352:2193..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 2194..2430 -
1695995788.6832333-CDS-E-fasciculatus_F_contig15352:2193..24301695995788.6832333-CDS-E-fasciculatus_F_contig15352:2193..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 2194..2430 -
1622928013.0467598-CDS-E-fasciculatus_F_contig15352:2906..30241622928013.0467598-CDS-E-fasciculatus_F_contig15352:2906..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 2907..3024 -
1695995788.6924818-CDS-E-fasciculatus_F_contig15352:2906..30241695995788.6924818-CDS-E-fasciculatus_F_contig15352:2906..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15352 2907..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15352.3762.1

>prot_E-fasciculatus_F_contig15352.3762.1 ID=prot_E-fasciculatus_F_contig15352.3762.1|Name=mRNA_E-fasciculatus_F_contig15352.3762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=303bp
LCRVATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVEAGNVVGGEPRRG
VPEPAQPAQPESAQPEPGGRRRSLLKAFQRTGRDEPWQFVGGAGAGAGGD
DGAGLVEVDALTDALFVRGAHLRHACALLRNAGTSGRATSRRLPMSYAGD
GSKDGTRSDFVDGQREEEEEEEDEIKQEQEQEGEISPDRHRRRRATTMAK
TTGNEAAAANSAMSFMKLPAVSYVLRKTLGVRSYASSELLPWGGPDGGKV
RWSWGGGKGDDNLGNFEASVPGSQFLPWECLSRSGLEPVLLSVTDLRDLR
AIK
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mRNA from alignment at E-fasciculatus_F_contig15352:147..3024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15352.3762.1 ID=mRNA_E-fasciculatus_F_contig15352.3762.1|Name=mRNA_E-fasciculatus_F_contig15352.3762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2878bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15352:147..3024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGCAGGGTTGCTACTGCGACGGGAGTGGAAGGCGTTTTCGGTGTGCG
GGGATGGCAGCGCACGCAGGACGCGCCCCGACCGAAGCGACAACGCCGCG
GTCTGCTGGTAGAGGCAGGTGGGAAAGGAAACACACACACACACACACAC
ACACACACATGGTCACAGGGTCACAGGGTCACAGGGTCACAGCGTCCCAG
GTTGTGGACTACAGAAGCATTTTGTGTTTTCCACCGCACTGAGACTGGCG
TCTTTATGTTGGTCGGTCGATGCTATTAATAAAAACACACACGGCACCTC
ACATGATCGATCGGTTAGGCGGGCCTCGTCCGATGTTTCGAGCCTATCTG
TTGCGGTGGGATTTCGTGGGATTGGTGGGGTTGATGGGAAGAAAAAACTC
AGCCTATCGGTCATGGCACGCTTCTAGTGCTGTATCCGACGCCCAATGAT
GGTGGGAGAAAGACTCTGTTCTGTCTGTCACCCGAAGGGGGGGGGGGGGG
GGGGGGGGGGTCTTATGAGCGTGATACGGAGTGCCCAAGCAGCAGCATAG
TAATCTGAAACCAATTTTTTTCTCTCTGGTTGCTTTTGGTGCAGGAAATG
TGGTCGGCGGGGAACCTAGACGCGGCGTTCCCGAACCGGCACAACCCGCT
CAACCCGAATCGGCGCAACCTGAACCGGGAGGGAGGAGAAGAAGCCTCCT
CAAGGCGTTCCAACGGACAGGAAGAGACGAGCCCTGGCAGTTCGTGGGGG
GAGCTGGAGCTGGAGCTGGTGGTGATGACGGTGCCGGTTTAGTGGAGGTG
GACGCTCTCACGGACGCTTTGTTCGTCAGAGGTGGGGCAGCGGGATTTTT
GTCTTCCGGTTCGGGGTTCTCGCATTCTCTAGACAAAATACATTCAATCG
AAAGAGAGGTTACCCATTCGAGACATTACCAGAGTCGAAGGGCATGATGT
GTTGGTGTATTTTTTCTTGCTATGCGCAAACCAAGAAATCTCCCACGTTT
GCATGGAAGGTGCTGTTGAATTGTGTTTTCTTGTGTCGTCGACGAAAAAG
TGGGATTTTATTCTCAGTGCTGTGCACTGTAGAGAACTAGAATATTTGCC
TCGCTGCGTATGTAGAGCAGTGGTAAAAGAAGCAGGTATTGAACATAGCG
ATGGCTTATCCCACCCTGAATCAATCGGTTGCTTGTTGAGTGAGTCATCG
CCCTCTGGTGGCATAAGTATATCTTCTCCACGCGTGTAGTTGTGTTTTGT
TGTTTGTTCCGAAAATATGTCGAATTCATCTCTATCCACAGGACAAGAGC
TTTTTTGTGTTGTCTTCGTGCCTGCAAGGCAAGCACGTCGTGGGAGTCTG
CCAAAGCGCTCGCCTCTTGCATTTTTCGAACGAAAAGTGTGCTCCTCGCT
TTTTCCTCGGCCTGGCGTTGGCCGACCGACCCTCGCGTTTCGTTTCGACG
ACGCAGGAGCCCACCTCAGGCACGCGTGCGCCCTCCTCCGCAACGCCGGC
ACCAGCGGCAGAGCAACAAGCAGAAGGCTTCCGATGTCGTATGCCGGCGA
CGGCAGCAAGGACGGAACGAGGAGTGACTTCGTCGACGGCCAAAGAGAAG
AAGAAGAAGAAGAAGAAGACGAAATAAGTCAAACTCTCGACCGCCACCGC
CGCCGCGAAGACGAAGAACAGAAAGAAGCAGAACAAGAACAAGAACAGGA
AGAACAAGAACAAGAACAAGAAGGCGAAATAAGCCCCGACCGTCACCGCC
GCCGCCGCGCTACAACCATGGCGAAGACGACAGGAAACGAAGCGGCAGCG
GCAAACTCCGCGATGAGCTTCATGAAGCTCCCGGCGGTGTCCTACGTCCT
CCGCAAGACCCTCGGGGTGCGGAGCTACGCCTCCAGCGAGCTGCTGCCTT
GGGGGGGACCGGACGGCGGAAAGGTCCGGTGGTCGTGGGGCGGGGGCAAG
GGCGACGACAACCTGGGAAATTTCGAGGTGAACGAGAAAAACTGAGGCCG
GGTCGCGGTACCGGGGTACTTATAGTCATGCATGCCGTAGTCGTTTAGAC
CAGTGACCTTGCATCCCTACATAAAAAGCCGGGACGGAGCCCGGACCAGG
CTATGGTATCACCAAGCGGGGGGAGGGCACTCATGTTTTGCAGTTGTTAG
GCCATTGACCGTGGGGGGAAAGCACGAGAATGAATGTGTTGCTTCACAGC
GATTGTTTATCCCGAGATTTTTTGCCATCCGTGTGGTGTTTGTTTGATTG
TCTACAACATGTTTCCTGTGCTGTCCGCGTTTTTTTCTGTTGTTTATGTA
CCCGAGGTGCCGGAAGAGACTTGGTGAAAGAGACTTCGCCGGGCAGGCTA
AAAAGAACAGATCAGGCGCTATTGTATTATTTAGAATGTTGCGAGCATGT
GGGTGCCATTTGTAGAAAAAAATCATACAAACACGGCGGTGACACTTACC
AGTTCGACATGTTGCAGTACGTTATCTCATCTTGCCAACAGTATATTGTC
GATTGCAAAAGGACGCCGCGCTCTCTGTATGGCTTCCGCTTGCTCGGAGA
TTTGCTCATAGCACCGACATAAGAGCCTGTGTCAAAGTACGAGCTCCACC
CTTTTATCGGTGCTTACAGTTAAATGGTCTGTTCTGTCTGTCGGTTGGTC
TACCTGTTGTTCTCTCTCTCCTTCTCTGTCTCTCTTTCTCTGTCTTTCTC
TCTCTCTCCCTGTCTGCCTGTCATGTTTGTCTGGCTATCTCGTGCGTGCT
GAATCGCCGTTCGTGATCAGGCTTCAGTCCCCGGCAGCCAGTTCTTGCCG
TGGGAGTGTCTGTCCCGGTCGGGGCTGGAGCCCGTGCTTCTTTCGGTGAC
AGATCTACGAGATCTACGAGCGATCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15352:147..3024-

>mRNA_E-fasciculatus_F_contig15352.3762.1 ID=mRNA_E-fasciculatus_F_contig15352.3762.1|Name=mRNA_E-fasciculatus_F_contig15352.3762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1818bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15352:147..3024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGCAGGGTTGCTACTGCGACGGGAGTGGAAGGCGTTTTCGGTGTGCG
GGGATGGCAGCGCACGCAGGACGCGCCCCGACCGAAGCGACAACGCCGCG
GTCTGCTGGTAGAGGCAGCTTTGCAGGGTTGCTACTGCGACGGGAGTGGA
AGGCGTTTTCGGTGTGCGGGGATGGCAGCGCACGCAGGACGCGCCCCGAC
CGAAGCGACAACGCCGCGGTCTGCTGGTAGAGGCAGGAAATGTGGTCGGC
GGGGAACCTAGACGCGGCGTTCCCGAACCGGCACAACCCGCTCAACCCGA
ATCGGCGCAACCTGAACCGGGAGGGAGGAGAAGAAGCCTCCTCAAGGCGT
TCCAACGGACAGGAAGAGACGAGCCCTGGCAGTTCGTGGGGGGAGCTGGA
GCTGGAGCTGGTGGTGATGACGGTGCCGGTTTAGTGGAGGTGGACGCTCT
CACGGACGCTTTGTTCGTCAGAGGAAATGTGGTCGGCGGGGAACCTAGAC
GCGGCGTTCCCGAACCGGCACAACCCGCTCAACCCGAATCGGCGCAACCT
GAACCGGGAGGGAGGAGAAGAAGCCTCCTCAAGGCGTTCCAACGGACAGG
AAGAGACGAGCCCTGGCAGTTCGTGGGGGGAGCTGGAGCTGGAGCTGGTG
GTGATGACGGTGCCGGTTTAGTGGAGGTGGACGCTCTCACGGACGCTTTG
TTCGTCAGAGGAGCCCACCTCAGGCACGCGTGCGCCCTCCTCCGCAACGC
CGGCACCAGCGGCAGAGCAACAAGCAGAAGGCTTCCGATGTCGTATGCCG
GCGACGGCAGCAAGGACGGAACGAGGAGTGACTTCGTCGACGGCCAAAGA
GAAGAAGAAGAAGAAGAAGAAGACGAAATAAGAGCCCACCTCAGGCACGC
GTGCGCCCTCCTCCGCAACGCCGGCACCAGCGGCAGAGCAACAAGCAGAA
GGCTTCCGATGTCGTATGCCGGCGACGGCAGCAAGGACGGAACGAGGAGT
GACTTCGTCGACGGCCAAAGAGAAGAAGAAGAAGAAGAAGAAGACGAAAT
AAAACAAGAACAAGAACAAGAAGGCGAAATAAGCCCCGACCGTCACCGCC
GCCGCCGCGCTACAACCATGGCGAAGACGACAGGAAACGAAGCGGCAGCG
GCAAACTCCGCGATGAGCTTCATGAAGCTCCCGGCGGTGTCCTACGTCCT
CCGCAAGACCCTCGGGGTGCGGAGCTACGCCTCCAGCGAGCTGCTGCCTT
GGGGGGGACCGGACGGCGGAAAGGTCCGGTGGTCGTGGGGCGGGGGCAAG
GGCGACGACAACCTGGGAAATTTCGAGAACAAGAACAAGAACAAGAAGGC
GAAATAAGCCCCGACCGTCACCGCCGCCGCCGCGCTACAACCATGGCGAA
GACGACAGGAAACGAAGCGGCAGCGGCAAACTCCGCGATGAGCTTCATGA
AGCTCCCGGCGGTGTCCTACGTCCTCCGCAAGACCCTCGGGGTGCGGAGC
TACGCCTCCAGCGAGCTGCTGCCTTGGGGGGGACCGGACGGCGGAAAGGT
CCGGTGGTCGTGGGGCGGGGGCAAGGGCGACGACAACCTGGGAAATTTCG
AGGCTTCAGTCCCCGGCAGCCAGTTCTTGCCGTGGGAGTGTCTGTCCCGG
TCGGGGCTGGAGCCCGTGCTTCTTTCGGTGACAGATCTACGAGATCTACG
AGCGATCAAGGCTTCAGTCCCCGGCAGCCAGTTCTTGCCGTGGGAGTGTC
TGTCCCGGTCGGGGCTGGAGCCCGTGCTTCTTTCGGTGACAGATCTACGA
GATCTACGAGCGATCAAG
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