mRNA_E-fasciculatus_F_contig1535.3759.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1535.3759.1
Unique NamemRNA_E-fasciculatus_F_contig1535.3759.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1535.3759.1 vs. uniprot
Match: A0A6H5LM95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM95_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.060e-5
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:    6 TRFSNNKQLSHLNVVVDKSVYGRIYI 83
            TRF NNKQ SHLNV+VDKSVYGRIYI
Sbjct:    7 TRFCNNKQPSHLNVLVDKSVYGRIYI 32
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1535.3759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LM95_9PHAE2.060e-588.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1535contigE-fasciculatus_F_contig1535:54..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size549
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1535.3759.1prot_E-fasciculatus_F_contig1535.3759.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1535 54..1093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.5689893-CDS-E-fasciculatus_F_contig1535:53..3831622928012.5689893-CDS-E-fasciculatus_F_contig1535:53..383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1535 54..383 -
1695995788.3940916-CDS-E-fasciculatus_F_contig1535:53..3831695995788.3940916-CDS-E-fasciculatus_F_contig1535:53..383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1535 54..383 -
1622928012.5843508-CDS-E-fasciculatus_F_contig1535:1006..10931622928012.5843508-CDS-E-fasciculatus_F_contig1535:1006..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1535 1007..1093 -
1695995788.4034305-CDS-E-fasciculatus_F_contig1535:1006..10931695995788.4034305-CDS-E-fasciculatus_F_contig1535:1006..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1535 1007..1093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.5988953-UTR-E-fasciculatus_F_contig1535:1093..12251622928012.5988953-UTR-E-fasciculatus_F_contig1535:1093..1225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1535 1094..1225 -
1695995788.4165668-UTR-E-fasciculatus_F_contig1535:1093..12251695995788.4165668-UTR-E-fasciculatus_F_contig1535:1093..1225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1535 1094..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1535.3759.1

>prot_E-fasciculatus_F_contig1535.3759.1 ID=prot_E-fasciculatus_F_contig1535.3759.1|Name=mRNA_E-fasciculatus_F_contig1535.3759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
MDISRHTQLPQQSPQASKTPTSVVHTALKVIGFEQEKDSMVGIVINYPFD
GEQSGDSRSWMATGPSVKKLENSAALQYSNAAFHLAVAALRKCCKWRDCS
LRGILWLGKVLKGEDSSFWFKARKGHKCTCMVLRGSHE*
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mRNA from alignment at E-fasciculatus_F_contig1535:54..1225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1535.3759.1 ID=mRNA_E-fasciculatus_F_contig1535.3759.1|Name=mRNA_E-fasciculatus_F_contig1535.3759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1172bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1535:54..1225- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTGACCCGCTTCAGCAATAACAAGCAACTTTCCCATCTCAACGTGGTC
GTGGACAAGAGTGTCTACGGAAGAATCTACATCTAGGAGCACGTCGCTGT
CGGGCGACGAGAGCACCCCTTCTCCTTGATAGATGGACATCTCTCGGCAC
ACACAGCTCCCACAGCAGTCACCACAGGCTTCAAAGACGCCTACAAGTGT
GGTACATACAGCCTTGAAGGTATCGTGGCGATCCGACCATCATGTCTGTC
TGTTGGCCGTACATAGTCTACTTGTGTCGAGGATCTGTTTCTCGTTTGAA
ATGTGCAACCATCACAACAGAGAGCGTGGTGTGCTAGCGACAGGAGGTGC
TCCGCTCTGATTTCAGCGTAGGAGAAAATCTGTAACAAATCTGTAGGGCA
ATCGTTGCGTTTCCTTGTAGTAATACACATTGTGGGAGATTCCCGAGGAA
CCCCTGTACGCGGCAGCAACAATAACGACAGCTGTGCGTGCACCTGTTGG
TCGGCAGCATCACGTGGCAGATGCACGACACACGAACGACCGGTTGTCCG
CATCGAATTGAAGTATGGTTCGCCATCGCAGGAGGTATCCCGTCCAGTCA
TGGTCGCCGCCGTAGGCGAACGGTGTTCGGTGTCTGATCCATACTGCTGT
AGCCAAACAAAAATCGAGCGACGACTTTTGTTTTGTTTCCCATACCAATA
GCAAGAAGTGTGTCACGTCACGACGACCACTCTGTGAGTATATACATAAC
ATGATCGTAGTTGAGGTTCTGGCGCACCCCCGTGCCAACTCGCGCGGACC
GTGTCAGCTCAACGGCCGTAAACAACTCAATGTAACTCTCAGGTGATCGG
TTTTGAGCAGGAAAAGGATAGCATGGTCGGCATCGTCATTAACTATCCTT
TCGATGGAGAGCAGAGCGGGGACTCCCGCAGTTGGATGGCCACAGGGCCG
AGCGTCAAGAAACTGGAGAATAGCGCTGCACTGCAATACTCGAATGCAGC
GTTCCATTTAGCTGTTGCGGCGTTGCGGAAGTGTTGCAAGTGGAGAGACT
GTAGTCTGAGAGGGATCCTATGGCTTGGGAAGGTCCTCAAAGGAGAGGAC
TCGAGCTTCTGGTTCAAGGCTCGCAAAGGCCACAAATGCACATGTATGGT
TTTGAGAGGATCCCACGAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1535:54..1225-

>mRNA_E-fasciculatus_F_contig1535.3759.1 ID=mRNA_E-fasciculatus_F_contig1535.3759.1|Name=mRNA_E-fasciculatus_F_contig1535.3759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1535:54..1225- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACATCTCTCGGCACACACAGCTCCCACAGCAGTCACCACAGGCTTC
AAAGACGCCTACAAGTGTGGTACATACAGCCTTGAAGATGGACATCTCTC
GGCACACACAGCTCCCACAGCAGTCACCACAGGCTTCAAAGACGCCTACA
AGTGTGGTACATACAGCCTTGAAGGTGATCGGTTTTGAGCAGGAAAAGGA
TAGCATGGTCGGCATCGTCATTAACTATCCTTTCGATGGAGAGCAGAGCG
GGGACTCCCGCAGTTGGATGGCCACAGGGCCGAGCGTCAAGAAACTGGAG
AATAGCGCTGCACTGCAATACTCGAATGCAGCGTTCCATTTAGCTGTTGC
GGCGTTGCGGAAGTGTTGCAAGTGGAGAGACTGTAGTCTGAGAGGGATCC
TATGGCTTGGGAAGGTCCTCAAAGGAGAGGACTCGAGCTTCTGGTTCAAG
GCTCGCAAAGGCCACAAATGCACATGTATGGTTTTGAGAGGATCCCACGA
ATGAGTGATCGGTTTTGAGCAGGAAAAGGATAGCATGGTCGGCATCGTCA
TTAACTATCCTTTCGATGGAGAGCAGAGCGGGGACTCCCGCAGTTGGATG
GCCACAGGGCCGAGCGTCAAGAAACTGGAGAATAGCGCTGCACTGCAATA
CTCGAATGCAGCGTTCCATTTAGCTGTTGCGGCGTTGCGGAAGTGTTGCA
AGTGGAGAGACTGTAGTCTGAGAGGGATCCTATGGCTTGGGAAGGTCCTC
AAAGGAGAGGACTCGAGCTTCTGGTTCAAGGCTCGCAAAGGCCACAAATG
CACATGTATGGTTTTGAGAGGATCCCACGAATGA
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