mRNA_E-fasciculatus_F_contig15346.3758.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15346.3758.1
Unique NamemRNA_E-fasciculatus_F_contig15346.3758.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.020e-25
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:  130 MVKFTPAFALASALSMANAGEVYVRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPASDAIKLMAENG 330
            MVKFT  FALAS LS+A+A +  VRVRNLTYLQPFSP+ VVAHTNDV++F+EG PASDAIKLMAE+G
Sbjct:    1 MVKFTAGFALASVLSLAHATDFKVRVRNLTYLQPFSPMLVVAHTNDVALFKEGLPASDAIKLMAEDG 67
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BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.840e-25
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:  175 MANAGEVYVRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPASDAIKLMAENG 330
            MANAGEVYVRVRNLTYLQPFSP+FVVAHTNDVSIFREGFPASDA+K+MAE+G
Sbjct:    1 MANAGEVYVRVRNLTYLQPFSPMFVVAHTNDVSIFREGFPASDAVKIMAEDG 52
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BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.390e-22
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  130 MVKFTPAFALASALSMANA-GEVY------VRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPASDAIKLMAENG 330
            MV FT AFA+AS +S+ANA G+ Y      VRVRNLTYLQPFSP  +VAHT DV++F+EGFPA+DAIKLMAE+G
Sbjct:    1 MVNFTAAFAMASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTKDVALFKEGFPANDAIKLMAEDG 74
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BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Match: B8CTX0_SHEPW (Spondin domain-containing protein n=3 Tax=Shewanella TaxID=22 RepID=B8CTX0_SHEPW)

HSP 1 Score: 52.8 bits (125), Expect = 7.920e-6
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  199 VRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPASDAIKLMAENG 330
            V V NLT  QP SPV VVAHTND +++  G PAS A++++AE+G
Sbjct:   51 VTVTNLTANQPMSPVAVVAHTNDSTLWSTGMPASVALEILAESG 94
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BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Match: UPI00131E4B58 (spondin domain-containing protein n=1 Tax=Paraglaciecola sp. L3A3 TaxID=2686358 RepID=UPI00131E4B58)

HSP 1 Score: 52.0 bits (123), Expect = 1.430e-5
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  130 MVKFTPAFALASALSMANAG----EVYVRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPASDAIKLMAENG 330
            M+K  P + LA+ L++++AG    E+ V ++NLT+   F+P+ VVAHT + S+F  G  AS  +++MAE G
Sbjct:    1 MIKIKPTY-LAALLAVSSAGLNAAELNVEIQNLTHGLYFTPIAVVAHTPESSLFEVGEVASTELQMMAEGG 70
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15346.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4K4_ECTSI1.020e-2576.12Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7G4K3_ECTSI2.840e-2592.31Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7FIE5_ECTSI4.390e-2267.57Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
B8CTX0_SHEPW7.920e-656.82Spondin domain-containing protein n=3 Tax=Shewanel... [more]
UPI00131E4B581.430e-540.85spondin domain-containing protein n=1 Tax=Paraglac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15346contigE-fasciculatus_F_contig15346:1161..2496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D7G4K4
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15346.3758.1prot_E-fasciculatus_F_contig15346.3758.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15346 1161..2495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.4786184-CDS-E-fasciculatus_F_contig15346:1160..13581622928012.4786184-CDS-E-fasciculatus_F_contig15346:1160..1358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 1161..1358 +
1695995788.3605666-CDS-E-fasciculatus_F_contig15346:1160..13581695995788.3605666-CDS-E-fasciculatus_F_contig15346:1160..1358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 1161..1358 +
1622928012.493891-CDS-E-fasciculatus_F_contig15346:1952..20181622928012.493891-CDS-E-fasciculatus_F_contig15346:1952..2018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 1953..2018 +
1695995788.372872-CDS-E-fasciculatus_F_contig15346:1952..20181695995788.372872-CDS-E-fasciculatus_F_contig15346:1952..2018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 1953..2018 +
1622928012.514744-CDS-E-fasciculatus_F_contig15346:2429..24951622928012.514744-CDS-E-fasciculatus_F_contig15346:2429..2495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 2430..2495 +
1695995788.383213-CDS-E-fasciculatus_F_contig15346:2429..24951695995788.383213-CDS-E-fasciculatus_F_contig15346:2429..2495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15346 2430..2495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15346.3758.1

>prot_E-fasciculatus_F_contig15346.3758.1 ID=prot_E-fasciculatus_F_contig15346.3758.1|Name=mRNA_E-fasciculatus_F_contig15346.3758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
PSPAHQPRYVDTHPSSSHLAALRSSLSSSLFLSSIHQHPSQAKMVKFTPA
FALASALSMANAGEVYVRVRNLTYLQPFSPVFVVAHTNDVSIFREGFPAS
DAIKLMAENG
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mRNA from alignment at E-fasciculatus_F_contig15346:1161..2496+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15346.3758.1 ID=mRNA_E-fasciculatus_F_contig15346.3758.1|Name=mRNA_E-fasciculatus_F_contig15346.3758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15346:1161..2496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAGCCCCGCGCACCAGCCGCGCTATGTAGACACACATCCATCCTCCTC
TCACCTTGCTGCGCTTCGTTCCTCTCTCTCTTCTTCTCTCTTTCTCTCTT
CGATACATCAACACCCCAGTCAAGCCAAGATGGTCAAGTTCACCCCTGCG
TTCGCTCTTGCTTCGGCGCTCTCTATGGCCAACGCCGGTGAAGTCTATGT
AAGTATAGCTGGCAACCTAAGGGCAGGAAGAGACAGAGTCAGGCAGTGCA
GTGCGGATGAACCCACACACACACACACATCATTTGGTGAAAGCTTCGAT
CATGTACGATAGTACAGGATCCCAGAAGCACGTGCCAGGGAGCACGTGTA
GGGAAGCTCTCACCGAGATCTTGCCTAAACCAGCGTATTTTAATTCTTTT
CAGTAGCAACCGCTTTTGGTGTTTGTTGTGGACCAATCGAGACTCTTCAC
AAGTGAGCCGATTTCATGATGGACACGATGGAGGAGAACATGCAGATTTC
TTTCACATTTCTCGAAGGGCCGCTCATGATGCGATACGCATCCATCCATC
TGTGGTGTGATACAGTAGAGATTTCTCATGCCGAATCGGTGCGGTGGATT
CAACTACGGCACTGCTGGGCATATGCTGCTGCCGCTGCTGCTTACGACAC
TATACTACCACGACCGCTCGCCTTTGCGAGAGGTTCATGATCTCGGCATG
GGTGATCTCTGTTCCCCGTCCTCTCGAAACCGGATCTTGAAATTTTCCTG
TTGGCCTTGACGGTCGTCCTGCGTGTTGTGTGCCTTTCACAGGTTCGCGT
GAGGAACCTGACCTACTTGCAGCCCTTCTCGCCCGTGTTCGTCGTGGCGC
ACACCAACGTGAGTTGAACTTTGCACTGTTGCTTTCGTTGGATACAGGCT
TGCTTCTTCTATGGTTCGCTGCGAAAAAATGGTCGATCGATGTGGAGATC
TTGTTGGTTCTGGCTCTCAAGGCACTGGCTGTCAAGGTTCATTGACTTCT
TGTGCTGTGTAGTGGCTCCTCGAAGATTTCGTCTGCTAGTTGCTGCTATA
CCCGGAGACTGCTTGTTCAGTTCACCTTGCTGTTGCTCCGTGTCGTCCTG
ACATTGTCGCCCGTTCCCATCCCTGTTCGACATATACTCCCACAGTCGAA
AGTAAAAGTCTATGCTATCTACATAGGTGTCCTCCCGCCCCATCTCTTTT
GCTACAAAAAATGCCTCCCGTAGCCTAATGCGTCGAGGTATTTGTGCATT
TCTCTCTCTCCCTCTGCAGGACGTGTCCATTTTCAGGGAGGGCTTTCCGG
CCAGCGACGCCATCAAGCTTATGGCGGAGAACGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15346:1161..2496+

>mRNA_E-fasciculatus_F_contig15346.3758.1 ID=mRNA_E-fasciculatus_F_contig15346.3758.1|Name=mRNA_E-fasciculatus_F_contig15346.3758.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15346:1161..2496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAGCCCCGCGCACCAGCCGCGCTATGTAGACACACATCCATCCTCCTC
TCACCTTGCTGCGCTTCGTTCCTCTCTCTCTTCTTCTCTCTTTCTCTCTT
CGATACATCAACACCCCAGTCAAGCCAAGATGGTCAAGTTCACCCCTGCG
TTCGCTCTTGCTTCGGCGCTCTCTATGGCCAACGCCGGTGAAGTCTATCC
CAGCCCCGCGCACCAGCCGCGCTATGTAGACACACATCCATCCTCCTCTC
ACCTTGCTGCGCTTCGTTCCTCTCTCTCTTCTTCTCTCTTTCTCTCTTCG
ATACATCAACACCCCAGTCAAGCCAAGATGGTCAAGTTCACCCCTGCGTT
CGCTCTTGCTTCGGCGCTCTCTATGGCCAACGCCGGTGAAGTCTATGTTC
GCGTGAGGAACCTGACCTACTTGCAGCCCTTCTCGCCCGTGTTCGTCGTG
GCGCACACCAACGTTCGCGTGAGGAACCTGACCTACTTGCAGCCCTTCTC
GCCCGTGTTCGTCGTGGCGCACACCAACGACGTGTCCATTTTCAGGGAGG
GCTTTCCGGCCAGCGACGCCATCAAGCTTATGGCGGAGAACGGTGACGTG
TCCATTTTCAGGGAGGGCTTTCCGGCCAGCGACGCCATCAAGCTTATGGC
GGAGAACGGT
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