mRNA_E-fasciculatus_F_contig15344.3756.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15344.3756.1
Unique NamemRNA_E-fasciculatus_F_contig15344.3756.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15344.3756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15344contigE-fasciculatus_F_contig15344:1636..2442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size807
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15344.3756.1prot_E-fasciculatus_F_contig15344.3756.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15344 1814..2236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.3731656-UTR-E-fasciculatus_F_contig15344:1635..18131622928012.3731656-UTR-E-fasciculatus_F_contig15344:1635..1813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15344 1636..1813 +
1695995788.3027453-UTR-E-fasciculatus_F_contig15344:1635..18131695995788.3027453-UTR-E-fasciculatus_F_contig15344:1635..1813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15344 1636..1813 +
1622928012.3941634-UTR-E-fasciculatus_F_contig15344:2236..24421622928012.3941634-UTR-E-fasciculatus_F_contig15344:2236..2442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15344 2237..2442 +
1695995788.3222482-UTR-E-fasciculatus_F_contig15344:2236..24421695995788.3222482-UTR-E-fasciculatus_F_contig15344:2236..2442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15344 2237..2442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.384331-CDS-E-fasciculatus_F_contig15344:1813..22361622928012.384331-CDS-E-fasciculatus_F_contig15344:1813..2236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15344 1814..2236 +
1695995788.3125474-CDS-E-fasciculatus_F_contig15344:1813..22361695995788.3125474-CDS-E-fasciculatus_F_contig15344:1813..2236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15344 1814..2236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15344.3756.1

>prot_E-fasciculatus_F_contig15344.3756.1 ID=prot_E-fasciculatus_F_contig15344.3756.1|Name=mRNA_E-fasciculatus_F_contig15344.3756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
MMSRACTACQARFRRLWSVARTGCLECRCQQSHTRVAVPSKNRTQTVGKL
RVRTHSRQSVLTGYIRDLRERWQHQDAALRPRHNSSKQARLVSSGVVMEG
SNHRNTQNNTSRRIYGTCALLALVEPALPPSPISISAVYR*
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mRNA from alignment at E-fasciculatus_F_contig15344:1636..2442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15344.3756.1 ID=mRNA_E-fasciculatus_F_contig15344.3756.1|Name=mRNA_E-fasciculatus_F_contig15344.3756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=807bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15344:1636..2442+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTAGTTGAGGTGGTTGATTTGATTCGTTCATCTATTTTTCTTGCCCTC
CACCACGCCCACCCAATGAGCTGCACTTCACTAGTCTCCGTCGTGGTTGG
CTAACTATCTATGTGGACAGGAGGATTTTCTCAGAGGGCGAGGGCATCAC
AAGTAGGCGACGTACAAGAATTGACAACATGATGTCCAGGGCGTGCACGG
CTTGTCAGGCCCGTTTTCGAAGGCTCTGGTCGGTCGCAAGAACTGGCTGC
TTGGAATGCCGATGCCAACAATCCCACACAAGGGTTGCCGTACCCTCCAA
GAATCGCACACAGACGGTGGGAAAACTCAGAGTACGCACCCACTCGAGAC
AGTCGGTCCTCACGGGATACATACGTGACCTGAGAGAGCGTTGGCAACAC
CAAGACGCCGCATTAAGACCAAGGCACAACAGCAGTAAGCAAGCGAGGTT
AGTGTCCTCGGGCGTCGTGATGGAAGGAAGTAATCACCGAAACACACAAA
ACAACACCAGCCGAAGAATCTATGGTACATGTGCATTGCTTGCTTTGGTG
GAGCCCGCTCTTCCGCCCTCTCCCATTTCGATCTCAGCAGTGTATCGCTG
AGACTGAGGCCACAGACTACACCCACCCGCCCCATGACAAACCCACAAGC
ATCTTGCTCCAGGTTGAGCACAATGACCGAATGAATGCTGCGGCTAATGC
AACCCTGCCTGTACATGTACAAATGAACACCGCAGCGCATGAAGAAAATC
AATCCCATCTCAACGCGTGATCGACACACCATGAGAGGAGAAATTGGGGG
AGTCAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15344:1636..2442+

>mRNA_E-fasciculatus_F_contig15344.3756.1 ID=mRNA_E-fasciculatus_F_contig15344.3756.1|Name=mRNA_E-fasciculatus_F_contig15344.3756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15344:1636..2442+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGTCCAGGGCGTGCACGGCTTGTCAGGCCCGTTTTCGAAGGCTCTG
GTCGGTCGCAAGAACTGGCTGCTTGGAATGCCGATGCCAACAATCCCACA
CAAGGGTTGCCGTACCCTCCAAGAATCGCACACAGACGGTGGGAAAACTC
AGAGTACGCACCCACTCGAGACAGTCGGTCCTCACGGGATACATACGTGA
CCTGAGAGAGCGTTGGCAACACCAAGACGCCGCATTAAGACCAAGGCACA
ACAGCAGTAAGCAAGCGAGGTTAGTGTCCTCGGGCGTCGTGATGGAAGGA
AGTAATCACCGAAACACACAAAACAACACCAGCCGAAGAATCTATGGTAC
ATGTGCATTGCTTGCTTTGGTGGAGCCCGCTCTTCCGCCCTCTCCCATTT
CGATCTCAGCAGTGTATCGCTGAATGATGTCCAGGGCGTGCACGGCTTGT
CAGGCCCGTTTTCGAAGGCTCTGGTCGGTCGCAAGAACTGGCTGCTTGGA
ATGCCGATGCCAACAATCCCACACAAGGGTTGCCGTACCCTCCAAGAATC
GCACACAGACGGTGGGAAAACTCAGAGTACGCACCCACTCGAGACAGTCG
GTCCTCACGGGATACATACGTGACCTGAGAGAGCGTTGGCAACACCAAGA
CGCCGCATTAAGACCAAGGCACAACAGCAGTAAGCAAGCGAGGTTAGTGT
CCTCGGGCGTCGTGATGGAAGGAAGTAATCACCGAAACACACAAAACAAC
ACCAGCCGAAGAATCTATGGTACATGTGCATTGCTTGCTTTGGTGGAGCC
CGCTCTTCCGCCCTCTCCCATTTCGATCTCAGCAGTGTATCGCTGA
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