mRNA_E-fasciculatus_F_contig15309.3739.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15309.3739.1
Unique NamemRNA_E-fasciculatus_F_contig15309.3739.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15309.3739.1 vs. uniprot
Match: D7FLX7_ECTSI (PepX_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLX7_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 3.000e-119
Identity = 246/366 (67.21%), Postives = 263/366 (71.86%), Query Frame = 1 
Query:    1 SRFDFKTEVSGFLVQRLSQDKDNPSDSAR-----KARAADPEAPLDSSSSNSSTTGSANAPXXXXXXXXXXXXXXXXAAEIDTTTATGEAQEAASASPAHTTPTGSAVSSSSPPTPSAPLLQEADDGDTAADAAVDAGATEAVAAAATEGLGLGGASVVLAESQESKASWKRARPRVRYFTHQEERWHDSADFPSDCADKTDVFLFLGGTEQHPPPTKQTVPGGPATKAQKEGGGAATIHHGVSAEGVDEGGEGSGGN---GRVPASSGGEAAADGGGAEAKPGVRGRLSSRLARWPSFRKPGLTLSQGSGEQEGEAKTHELEVDMLEDHDGEGVSRWAAMTEFLSLISYQVDGNQDRVASLCSPP 1074
            S+FDFKTEVSGFLVQRLSQD  NPSDSA+     KA AADPEAPL+SS+                            AAE  TTTAT +AQ  AS+SPAH               PS PLLQ+  D    A AAVDAGATEAV AAA  G   GGASV+L ESQESKA W+RARPRVRYFTHQEERWHDSADFPSD AD+TDV LFLG TEQHP  TKQTVPGGPAT AQKEG GAATIHHGV+AEGV EGGEGSGG+   GR   SSGGEAAADG GAEAK GVR RLSSRL  WPSFRKP LTLSQGSG +E EA+THELEVDMLEDHDGEG+SRWAAMTEFLSLISYQ+DG +       S P
Sbjct:  584 SKFDFKTEVSGFLVQRLSQD--NPSDSAKASDSAKAPAADPEAPLESST----------------------------AAEAGTTTATRDAQ--ASSSPAHXXXXXXXXXXXXXXXPSVPLLQDGGDAGANAAAAVDAGATEAVDAAAEGG---GGASVLLDESQESKALWRRARPRVRYFTHQEERWHDSADFPSDRADRTDVLLFLGDTEQHPLSTKQTVPGGPATNAQKEGEGAATIHHGVNAEGV-EGGEGSGGSEQTGRELGSSGGEAAADGSGAEAKRGVRVRLSSRLTSWPSFRKPRLTLSQGSGAREEEARTHELEVDMLEDHDGEGISRWAAMTEFLSLISYQMDGMRSNHLRFTSAP 913
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15309.3739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLX7_ECTSI3.000e-11967.21PepX_C domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15309contigE-fasciculatus_F_contig15309:779..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.2
Seed ortholog evalue1e-105
Seed eggNOG ortholog2880.D7FLX7
EggNOG free text desc.X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
EggNOG OGs2A9IM@1,2RYIS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1075
Cds size1074
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15309.3739.1prot_E-fasciculatus_F_contig15309.3739.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15309 779..2956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.833016-CDS-E-fasciculatus_F_contig15309:778..13121622928009.833016-CDS-E-fasciculatus_F_contig15309:778..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 779..1312 +
1695995787.4741971-CDS-E-fasciculatus_F_contig15309:778..13121695995787.4741971-CDS-E-fasciculatus_F_contig15309:778..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 779..1312 +
1622928009.845274-CDS-E-fasciculatus_F_contig15309:1864..22151622928009.845274-CDS-E-fasciculatus_F_contig15309:1864..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 1865..2215 +
1695995787.4851108-CDS-E-fasciculatus_F_contig15309:1864..22151695995787.4851108-CDS-E-fasciculatus_F_contig15309:1864..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 1865..2215 +
1622928009.8603802-CDS-E-fasciculatus_F_contig15309:2767..29561622928009.8603802-CDS-E-fasciculatus_F_contig15309:2767..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 2768..2956 +
1695995787.4937208-CDS-E-fasciculatus_F_contig15309:2767..29561695995787.4937208-CDS-E-fasciculatus_F_contig15309:2767..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15309 2768..2956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15309.3739.1

>prot_E-fasciculatus_F_contig15309.3739.1 ID=prot_E-fasciculatus_F_contig15309.3739.1|Name=mRNA_E-fasciculatus_F_contig15309.3739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=358bp
SRFDFKTEVSGFLVQRLSQDKDNPSDSARKARAADPEAPLDSSSSNSSTT
GSANAPNARAADPEAPLDSSSSAAEIDTTTATGEAQEAASASPAHTTPTG
SAVSSSSPPTPSAPLLQEADDGDTAADAAVDAGATEAVAAAATEGLGLGG
ASVVLAESQESKASWKRARPRVRYFTHQEERWHDSADFPSDCADKTDVFL
FLGGTEQHPPPTKQTVPGGPATKAQKEGGGAATIHHGVSAEGVDEGGEGS
GGNGRVPASSGGEAAADGGGAEAKPGVRGRLSSRLARWPSFRKPGLTLSQ
GSGEQEGEAKTHELEVDMLEDHDGEGVSRWAAMTEFLSLISYQVDGNQDR
VASLCSPP
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mRNA from alignment at E-fasciculatus_F_contig15309:779..2956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15309.3739.1 ID=mRNA_E-fasciculatus_F_contig15309.3739.1|Name=mRNA_E-fasciculatus_F_contig15309.3739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2178bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15309:779..2956+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTAGGTTTGACTTCAAGACGGAAGTGTCAGGGTTTCTGGTCCAGCGTCT
CTCGCAAGACAAAGACAATCCCTCGGACTCGGCAAGAAAAGCACGCGCGG
CCGATCCAGAAGCGCCTCTCGACAGCAGTAGCAGCAACAGCAGCACGACC
GGCTCGGCAAACGCCCCGAACGCACGCGCCGCCGATCCAGAAGCGCCTCT
CGACAGCAGCAGCAGCGCGGCGGAGATCGACACAACCACGGCAACGGGAG
AAGCCCAAGAAGCTGCTTCTGCTTCTCCCGCCCATACCACGCCGACGGGT
TCAGCCGTGTCGTCGTCGTCGCCGCCCACCCCGTCTGCGCCGCTTCTGCA
AGAAGCTGACGACGGCGATACCGCCGCCGATGCTGCTGTTGATGCTGGCG
CGACGGAGGCTGTTGCCGCTGCTGCTACGGAGGGCTTAGGGTTAGGCGGC
GCGAGCGTCGTCCTCGCTGAGAGCCAGGAATCGAAGGCCTCGTGGAAGCG
GGCCCGGCCTAGGGTCAGATACTTCACGCACCAGGTAAGGGGGCGTTTAT
TTTTTTTTCTATGTCACCTTCCACGAGAAGAATTATTACTTTTTTCAGCA
GTACTCTCGACAGATCATGTATGGAGTATGTCAGATACTTGACGCAACAG
GCAAGGAGGCATCGAGGCAAGGAGGCATCGAGGCAAGGAGGCATCGAGGC
AAGGAGGTATTGTGTTTCCACGTATTTTCTATTTTTGTTCCGACGGATCA
TGCATGTCAGATCATTCACGCAACAGGCAAGGAGGTACTTTTTTTCCACG
TCGCCTTCCACAAGGCGTTTTTTTTATTGACGCTTGGACAGATCATGCAT
GCGGCGATGCGCTCGCACGCAGTGGCAGCTGCGTGGTAGTACGCGCGCTC
TACCTTGCCTACATGTAGTGGGAACTGTAGGAGTGAGGTTCCAGGTGCAT
AAAAAGCCCTCTTCTTCGGATCCCATGGCTCAATCACCTAAACCTGTACA
TTCCCTGAAAAGTGTCCGTTTGTCACCCCAACCGTCAATGAAACCCCGCG
GTTGGTTCTGTCTTCGATCGTGTTCCTGCTCGGCAGGAAGAAAGATGGCA
CGATTCCGCCGACTTTCCTTCGGATTGCGCCGACAAGACGGACGTGTTCC
TCTTCCTGGGCGGCACGGAACAACACCCGCCCCCCACCAAGCAGACAGTC
CCAGGGGGGCCCGCCACAAAAGCGCAGAAAGAAGGGGGGGGTGCGGCAAC
GATCCACCATGGCGTTAGCGCTGAAGGGGTGGACGAAGGGGGCGAGGGTA
GTGGGGGGAATGGACGTGTGCCGGCGAGTAGCGGAGGCGAGGCTGCGGCG
GACGGGGGCGGTGCGGAGGCTAAGCCGGGCGTCAGGGGAAGGCTGTCATC
ACGCTTGGCACGCTGGCCATCCTTCAGGAAACCCGGGGTGAGAGGCGGTC
GTGGTGGTGGTGGCTGGCGACTAGCAGCGGTGGGGTAGAGGTCATGGTAC
TTGTACACGCTTTGGGTTTACGTTAGTAGGATGAGCGATTGGCATTGAAG
TTGCGTCCTCACCATCGTTGTATCTCTGTCTTCGACGTGTATACTGCGTA
GTATCGTGTACTCCGACGCAAGGACGTACGGCAGTGTCATGCACGTTTTT
CTCCCACCCCCCCGCCTGGAGTTTACGGGGCGTCGTGGTTTTCGACCGGC
CGGCGCTGCAGGGAGTGTGGCCTCCGCTTCTGCCGTTCCTTCTGCCGTTC
TGCTGGAGTGTGACCATGGCAACGCAGCTCGCGAAATGAAGCAGACAGAC
AGGCAGTCGTTGAAAACCAAGTGAAAATCACGCCTCGCGACATGAATTAG
ACAGTCGTGAATACCACGTGAAAACCATTCCAACTGCGCTCGTTCATGGA
AAAAACAGCAACCGCGTCCTTAAGCTAAAACCCTAAACCTAAGTTTGCGC
TGGCTCTATTGTTTCCGGCCGGGGTGGTAAACGACGAAGCTGACGCTGTC
CCAAGGCTCGGGGGAGCAGGAAGGGGAAGCAAAGACCCACGAGCTGGAGG
TGGACATGTTGGAAGACCATGACGGGGAAGGTGTCAGCCGATGGGCGGCC
ATGACCGAGTTCTTGAGCCTCATCTCCTACCAGGTGGACGGCAACCAGGA
TCGTGTCGCGAGTCTTTGTTCGCCTCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15309:779..2956+

>mRNA_E-fasciculatus_F_contig15309.3739.1 ID=mRNA_E-fasciculatus_F_contig15309.3739.1|Name=mRNA_E-fasciculatus_F_contig15309.3739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2148bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15309:779..2956+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTAGGTTTGACTTCAAGACGGAAGTGTCAGGGTTTCTGGTCCAGCGTCT
CTCGCAAGACAAAGACAATCCCTCGGACTCGGCAAGAAAAGCACGCGCGG
CCGATCCAGAAGCGCCTCTCGACAGCAGTAGCAGCAACAGCAGCACGACC
GGCTCGGCAAACGCCCCGAACGCACGCGCCGCCGATCCAGAAGCGCCTCT
CGACAGCAGCAGCAGCGCGGCGGAGATCGACACAACCACGGCAACGGGAG
AAGCCCAAGAAGCTGCTTCTGCTTCTCCCGCCCATACCACGCCGACGGGT
TCAGCCGTGTCGTCGTCGTCGCCGCCCACCCCGTCTGCGCCGCTTCTGCA
AGAAGCTGACGACGGCGATACCGCCGCCGATGCTGCTGTTGATGCTGGCG
CGACGGAGGCTGTTGCCGCTGCTGCTACGGAGGGCTTAGGGTTAGGCGGC
GCGAGCGTCGTCCTCGCTGAGAGCCAGGAATCGAAGGCCTCGTGGAAGCG
GGCCCGGCCTAGGGTCAGATACTTCACGCACCAGTCTAGGTTTGACTTCA
AGACGGAAGTGTCAGGGTTTCTGGTCCAGCGTCTCTCGCAAGACAAAGAC
AATCCCTCGGACTCGGCAAGAAAAGCACGCGCGGCCGATCCAGAAGCGCC
TCTCGACAGCAGTAGCAGCAACAGCAGCACGACCGGCTCGGCAAACGCCC
CGAACGCACGCGCCGCCGATCCAGAAGCGCCTCTCGACAGCAGCAGCAGC
GCGGCGGAGATCGACACAACCACGGCAACGGGAGAAGCCCAAGAAGCTGC
TTCTGCTTCTCCCGCCCATACCACGCCGACGGGTTCAGCCGTGTCGTCGT
CGTCGCCGCCCACCCCGTCTGCGCCGCTTCTGCAAGAAGCTGACGACGGC
GATACCGCCGCCGATGCTGCTGTTGATGCTGGCGCGACGGAGGCTGTTGC
CGCTGCTGCTACGGAGGGCTTAGGGTTAGGCGGCGCGAGCGTCGTCCTCG
CTGAGAGCCAGGAATCGAAGGCCTCGTGGAAGCGGGCCCGGCCTAGGGTC
AGATACTTCACGCACCAGGAAGAAAGATGGCACGATTCCGCCGACTTTCC
TTCGGATTGCGCCGACAAGACGGACGTGTTCCTCTTCCTGGGCGGCACGG
AACAACACCCGCCCCCCACCAAGCAGACAGTCCCAGGGGGGCCCGCCACA
AAAGCGCAGAAAGAAGGGGGGGGTGCGGCAACGATCCACCATGGCGTTAG
CGCTGAAGGGGTGGACGAAGGGGGCGAGGGTAGTGGGGGGAATGGACGTG
TGCCGGCGAGTAGCGGAGGCGAGGCTGCGGCGGACGGGGGCGGTGCGGAG
GCTAAGCCGGGCGTCAGGGGAAGGCTGTCATCACGCTTGGCACGCTGGCC
ATCCTTCAGGAAACCCGGGGAAGAAAGATGGCACGATTCCGCCGACTTTC
CTTCGGATTGCGCCGACAAGACGGACGTGTTCCTCTTCCTGGGCGGCACG
GAACAACACCCGCCCCCCACCAAGCAGACAGTCCCAGGGGGGCCCGCCAC
AAAAGCGCAGAAAGAAGGGGGGGGTGCGGCAACGATCCACCATGGCGTTA
GCGCTGAAGGGGTGGACGAAGGGGGCGAGGGTAGTGGGGGGAATGGACGT
GTGCCGGCGAGTAGCGGAGGCGAGGCTGCGGCGGACGGGGGCGGTGCGGA
GGCTAAGCCGGGCGTCAGGGGAAGGCTGTCATCACGCTTGGCACGCTGGC
CATCCTTCAGGAAACCCGGGCTGACGCTGTCCCAAGGCTCGGGGGAGCAG
GAAGGGGAAGCAAAGACCCACGAGCTGGAGGTGGACATGTTGGAAGACCA
TGACGGGGAAGGTGTCAGCCGATGGGCGGCCATGACCGAGTTCTTGAGCC
TCATCTCCTACCAGGTGGACGGCAACCAGGATCGTGTCGCGAGTCTTTGT
TCGCCTCCCCTGACGCTGTCCCAAGGCTCGGGGGAGCAGGAAGGGGAAGC
AAAGACCCACGAGCTGGAGGTGGACATGTTGGAAGACCATGACGGGGAAG
GTGTCAGCCGATGGGCGGCCATGACCGAGTTCTTGAGCCTCATCTCCTAC
CAGGTGGACGGCAACCAGGATCGTGTCGCGAGTCTTTGTTCGCCTCCC
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