mRNA_E-fasciculatus_F_contig15296.3734.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15296.3734.1
Unique NamemRNA_E-fasciculatus_F_contig15296.3734.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15296.3734.1 vs. uniprot
Match: A0A6H5L076_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L076_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 6.500e-50
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 
Query:   82 EGELMDFAFAPGLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTATQFCRWLGAHLRELEAKNKXXXXXXXXXXXXXXXXXXXGGKPAKQEASGG 450
            EGELMDF+F PGLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTAT+FC WLGA+LRELEAKN XXXXXXXXXXXXXXXXXXX  KP+KQ+ASGG
Sbjct:   29 EGELMDFSFPPGLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTATKFCIWLGAYLRELEAKNXXXXXXXXXXXXXXXXXXXXXKKPSKQQASGG 151
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BLAST of mRNA_E-fasciculatus_F_contig15296.3734.1 vs. uniprot
Match: D7G5I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.090e-49
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:   82 EGELMDFAFAPGLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTATQFCRWLGAHLRELEAKNK 357
            EGELMDF+F  GLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTAT+FCRWLGAHLRELE KNK
Sbjct:   27 EGELMDFSFPLGLMQEGDNTASVKGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTATEFCRWLGAHLRELEGKNK 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15296.3734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L076_9PHAE6.500e-5091.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5I3_ECTSI2.090e-4994.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15296contigE-fasciculatus_F_contig15296:300..2634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000720.1
Exons4
Model size543
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15296.3734.1prot_E-fasciculatus_F_contig15296.3734.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15296 300..2634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.3515155-CDS-E-fasciculatus_F_contig15296:299..5251622928009.3515155-CDS-E-fasciculatus_F_contig15296:299..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 300..525 -
1695995787.1392705-CDS-E-fasciculatus_F_contig15296:299..5251695995787.1392705-CDS-E-fasciculatus_F_contig15296:299..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 300..525 -
1622928009.3719172-CDS-E-fasciculatus_F_contig15296:830..8931622928009.3719172-CDS-E-fasciculatus_F_contig15296:830..893Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 831..893 -
1695995787.1491733-CDS-E-fasciculatus_F_contig15296:830..8931695995787.1491733-CDS-E-fasciculatus_F_contig15296:830..893Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 831..893 -
1622928009.3831565-CDS-E-fasciculatus_F_contig15296:1775..18761622928009.3831565-CDS-E-fasciculatus_F_contig15296:1775..1876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 1776..1876 -
1695995787.1592638-CDS-E-fasciculatus_F_contig15296:1775..18761695995787.1592638-CDS-E-fasciculatus_F_contig15296:1775..1876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 1776..1876 -
1622928009.3951867-CDS-E-fasciculatus_F_contig15296:2481..26341622928009.3951867-CDS-E-fasciculatus_F_contig15296:2481..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 2482..2634 -
1695995787.1673882-CDS-E-fasciculatus_F_contig15296:2481..26341695995787.1673882-CDS-E-fasciculatus_F_contig15296:2481..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15296 2482..2634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15296.3734.1

>prot_E-fasciculatus_F_contig15296.3734.1 ID=prot_E-fasciculatus_F_contig15296.3734.1|Name=mRNA_E-fasciculatus_F_contig15296.3734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
MVSEAAGEGSGSAGQQKAAAAAAAEGGEGELMDFAFAPGLMQEGDNTASV
KGAVTKKLEELMEEPCDEVFPEYITVMVSNGKTIREICSQLEDLLTAGTA
TQFCRWLGAHLRELEAKNKNAAAAAAPKATTASKGEGEGGKPAKQEASGG
GKTSSSSRGGAGKASGSGDDGKASGKGAGSK
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mRNA from alignment at E-fasciculatus_F_contig15296:300..2634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15296.3734.1 ID=mRNA_E-fasciculatus_F_contig15296.3734.1|Name=mRNA_E-fasciculatus_F_contig15296.3734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2335bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15296:300..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTCTGAGGCGGCGGGCGAGGGGAGTGGTTCGGCGGGCCAGCAGAA
AGCGGCGGCGGCGGCGGCGGCGGAAGGAGGGGAAGGGGAGCTGATGGACT
TCGCGTTCGCGCCGGGGCTGATGCAGGAGGGCGACAACACCGCATCTGTC
AAGGTATCCATAGCATACACAGCAGTACTGTCGCCTTCGAGGACAAGGTG
TTCGATTAAGTAAACATGTTGGATAAAGCATGCAATCGGGGAGGTTGGGC
TAGGGCTAGGGGTAGGGATAGGGTCTGCGTACCCCCCTTCCTGTTCTATT
TCCTCGTAAACTTGTTGTATTTCCTCGTAAACTTGTTCTATTTCCTCGTA
AAGTTGAGTTCTCGCAAAGACGGTCCTCTCGCTCCTGCAGCTGTGATGAT
GGTTATTGTAGATGATGCCGCCGTTTACGTTGTGGGCTGTCATCGTCCTC
GCTGCTGCTGTCGTCGTTTGTTCTCGAGCCTTTTTTGCAACGTGCCGCCA
TCGTGGCCGTTGCTGCTGCAGCTGTGTCTTTGCCTGGACGCCTTTTTGTT
GGCCTCTTGTCGTTGCAGCAGCTTCATGGTCATGATCATCGTGCTGCTGC
TGCTGCTGCTGCTGCTGTTGCCGTTGTCGCCGTCGTCGTCATGCGATTGA
TTCTCTACGGTCGCTAATGCTGTCGTTTCTCTCGACCCTTTTTGTCAACA
TGCCGTCGTCTTTGCTATTGATGTTTGCTGCTTGCTTGCTTGCTGCCGTA
CTCCAAAGGGTGCTGTGACGAAGAAGCTGGAGGAGCTCATGGAAGAACCA
TGCGACGAGGTATTTCCCGAGTACATCACCGTCATGGTCAGCAACGGGAA
AACCATCAGGTGCGGTGGTTGTGCGAGCGGACGGACGACTTGGTTCTCTT
CTAGCCAAAGTTTTGTTTTTTCATTGAACCACCGGTCGTAGCACGCCGTA
CACTTACCCTCCCCTTGACGCCAAAGAAGGTGGTTGTTAACGCCAAAGAA
GGTGGTTGTTAACGCCAAAGAAGGTGGTTGCTATACTGGGGCAGAGGTAG
TGGGCTGAAAAGGCGGGAAGTGTATCGATAGAATATGCAAGAGCCACTTT
TGGGGATGTTCGGCCGGCCCCAAGGCAGCGATGAAAAGCATGCTCCGGGC
TAGCTGACTGAGACCCACAAACGTTGCGTGGGGCTGGTGGGTTTCTAATC
GGGGGGAGGCGTACAAACGGGAGACACCAGCACCGACAAAAACGGTGGCG
ACTCAACGGGACACGATAATAGGTGGCGGATCTTTTTGTGCAGATTAGAC
GCAGCTCCATGGTGACATGATGTACAAAACATTTTTGGAAACCAATCATC
TCCAATATCATCTCGCATGTGCGTGGAACTCCGCCTCTGTTGCAACTCGC
AACGTACAAGCGTATCTCCTGCTGTGCGCTGCACGAAGAACTCTGGTGTG
TAGGCTAACTTCAAAGCAACGGTAGACTGCCTGGTGGTGTATTGTCCATG
ACACCAAGCTACGTGTCCTCTACTGTGCTCTGTTGGAGTACTTGATACCA
TTATACCATTATTTATTTATTTGGTATTGTATTTTCCGATGTGTGTATTT
TGTTGTGTGTTTTCGATATATATATATTTTTTGTCGGCTCCTCTTTGGTG
CTTTGTGCTTGAAGTTAATAACGATTCTCTCTCACACATACTGTGTCCTC
CGCGGTGTTTTTTTTGTTTGTTCGCCTACCATTGCCTACAGGGAGATCTG
CTCCCAGCTGGAAGACCTCCTCACAGCCGGCACCGCCACCCAATTCTGCA
GATGGTGAGACAGACGGAAGGAGGCGTTTCGTCCCGCAGCTGGTGGCGTG
GGTGCGATCGCCGCCAACTGCCTTTGTCCCTCTTTTTTTGTCGTTTTTTG
AACGCGTGTGTGCCGAGTTTGAAAACGGTAATGTGTCCCTTGTCCCACCC
ATACCGTGCCAGATTGGTTTTGGTCATGGTACACCTTGATGTGCCGCTTT
ATATGCTGTATCGCGTTGATGAGTGCGGCGAAATCCCGCTCTCACAGCCC
CCCCCCCCCCCCCCCCCCCCCGCGCGCTTGCCGCGGCGCCCCGCAAACGC
GGCCCACAGGCTGGGTGCACACCTTCGTGAGCTCGAGGCAAAGAACAAGA
ATGCTGCTGCCGCTGCTGCACCCAAGGCTACGACGGCTTCGAAAGGAGAG
GGGGAGGGGGGGAAGCCCGCGAAGCAGGAAGCTAGCGGCGGTGGCAAGAC
ATCCTCTTCCTCCCGTGGCGGTGCTGGCAAGGCTAGCGGCAGCGGCGACG
ACGGGAAGGCTAGCGGCAAGGGTGCCGGTTCGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15296:300..2634-

>mRNA_E-fasciculatus_F_contig15296.3734.1 ID=mRNA_E-fasciculatus_F_contig15296.3734.1|Name=mRNA_E-fasciculatus_F_contig15296.3734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15296:300..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTCTGAGGCGGCGGGCGAGGGGAGTGGTTCGGCGGGCCAGCAGAA
AGCGGCGGCGGCGGCGGCGGCGGAAGGAGGGGAAGGGGAGCTGATGGACT
TCGCGTTCGCGCCGGGGCTGATGCAGGAGGGCGACAACACCGCATCTGTC
AAGATGGTGTCTGAGGCGGCGGGCGAGGGGAGTGGTTCGGCGGGCCAGCA
GAAAGCGGCGGCGGCGGCGGCGGCGGAAGGAGGGGAAGGGGAGCTGATGG
ACTTCGCGTTCGCGCCGGGGCTGATGCAGGAGGGCGACAACACCGCATCT
GTCAAGGGTGCTGTGACGAAGAAGCTGGAGGAGCTCATGGAAGAACCATG
CGACGAGGTATTTCCCGAGTACATCACCGTCATGGTCAGCAACGGGAAAA
CCATCAGGGTGCTGTGACGAAGAAGCTGGAGGAGCTCATGGAAGAACCAT
GCGACGAGGTATTTCCCGAGTACATCACCGTCATGGTCAGCAACGGGAAA
ACCATCAGGGAGATCTGCTCCCAGCTGGAAGACCTCCTCACAGCCGGCAC
CGCCACCCAATTCTGCAGATGGGAGATCTGCTCCCAGCTGGAAGACCTCC
TCACAGCCGGCACCGCCACCCAATTCTGCAGATGGCTGGGTGCACACCTT
CGTGAGCTCGAGGCAAAGAACAAGAATGCTGCTGCCGCTGCTGCACCCAA
GGCTACGACGGCTTCGAAAGGAGAGGGGGAGGGGGGGAAGCCCGCGAAGC
AGGAAGCTAGCGGCGGTGGCAAGACATCCTCTTCCTCCCGTGGCGGTGCT
GGCAAGGCTAGCGGCAGCGGCGACGACGGGAAGGCTAGCGGCAAGGGTGC
CGGTTCGAAGGCTGGGTGCACACCTTCGTGAGCTCGAGGCAAAGAACAAG
AATGCTGCTGCCGCTGCTGCACCCAAGGCTACGACGGCTTCGAAAGGAGA
GGGGGAGGGGGGGAAGCCCGCGAAGCAGGAAGCTAGCGGCGGTGGCAAGA
CATCCTCTTCCTCCCGTGGCGGTGCTGGCAAGGCTAGCGGCAGCGGCGAC
GACGGGAAGGCTAGCGGCAAGGGTGCCGGTTCGAAG
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