mRNA_E-fasciculatus_F_contig15293.3732.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15293.3732.1
Unique NamemRNA_E-fasciculatus_F_contig15293.3732.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: D7FW04_ECTSI (Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW04_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.380e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI
Sbjct:  780 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 818
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: L1ITJ1_GUITC (Magnesium chelatase n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1ITJ1_GUITC)

HSP 1 Score: 66.2 bits (160), Expect = 1.220e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL ELVSSYQGLR+N ARGPSIV++ +A ARTCNLDKDI
Sbjct:  759 ELGELVSSYQGLRENEARGPSIVNSIVASARTCNLDKDI 797
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A7S0MDR9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDR9_9CRYP)

HSP 1 Score: 64.7 bits (156), Expect = 4.270e-11
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL ELVSSY+GLR+N ARGPSIV++ +A ARTCNLDKDI
Sbjct:  489 ELGELVSSYKGLRENEARGPSIVNSIVASARTCNLDKDI 527
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A7S2SP26_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP26_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.960e-11
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            ELNELVSSY+GLR+N ARGPSIV++ I+ AR CNLDKDI
Sbjct:  575 ELNELVSSYKGLRENEARGPSIVNSIISTARQCNLDKDI 613
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: F0YEX3_AURAN (Magnesium chelatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX3_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.080e-10
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL+ELVSSYQGLR+N ARGPSIV++ I+ A TCNLDKDI
Sbjct:  758 ELSELVSSYQGLRENEARGPSIVNSIISAAYTCNLDKDI 796
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A7S1E1D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1D8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.730e-10
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL EL+SSYQGLR+N ARGP+IV++ ++ A TCNLDKDI
Sbjct:   13 ELKELISSYQGLRENEARGPAIVNSIVSTAWTCNLDKDI 51
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A7S3ZNS4_9STRA (Magnesium chelatase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.020e-10
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL+ELVSSYQGLR+N ARGPSIV++ IA A +CNLDKD+
Sbjct:  755 ELSELVSSYQGLRENEARGPSIVNSIIAAAYSCNLDKDV 793
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A7R9YAB0_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAB0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.030e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL ELV SYQGLR+N  RGPSIV+  +A ARTCNLDKDI
Sbjct:  782 ELGELVKSYQGLRENEGRGPSIVNTIVASARTCNLDKDI 820
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A835YVC9_9STRA (Magnesium chelatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.770e-10
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL EL+ SYQGLR+N +RGPSIV++++A AR CNLDKDI
Sbjct:  771 ELGELIGSYQGLRENTSRGPSIVNSAVAAARQCNLDKDI 809
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BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Match: A0A6U4P8T8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4P8T8_HEMAN)

HSP 1 Score: 62.0 bits (149), Expect = 3.790e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI 117
            EL ELVSSY+GLR+N ARGPSIV++ I+ AR CNLDKDI
Sbjct:  495 ELGELVSSYKGLRENEARGPSIVNSIISSARVCNLDKDI 533
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15293.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FW04_ECTSI3.380e-17100.00Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
L1ITJ1_GUITC1.220e-1179.49Magnesium chelatase n=2 Tax=Geminigeraceae TaxID=5... [more]
A0A7S0MDR9_9CRYP4.270e-1176.92Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2SP26_9STRA7.960e-1176.92Magnesium chelatase (Fragment) n=1 Tax=Rhizochromu... [more]
F0YEX3_AURAN1.080e-1076.92Magnesium chelatase n=1 Tax=Aureococcus anophageff... [more]
A0A7S1E1D8_9STRA1.730e-1069.23Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A7S3ZNS4_9STRA2.020e-1074.36Magnesium chelatase n=1 Tax=Pelagomonas calceolata... [more]
A0A7R9YAB0_9STRA2.030e-1074.36Magnesium chelatase (Fragment) n=1 Tax=Pinguiococc... [more]
A0A835YVC9_9STRA2.770e-1069.23Magnesium chelatase n=2 Tax=Tribonema minus TaxID=... [more]
A0A6U4P8T8_HEMAN3.790e-1074.36Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15293contigE-fasciculatus_F_contig15293:2084..2200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog2880.D7FW04
Preferred nameCHLH
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
EggNOG free text desc.ligase activity, forming nitrogen-metal bonds
EggNOG OGs2QT3B@2759,COG1429@1
EC6.6.1.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.2345433-CDS-E-fasciculatus_F_contig15293:2083..22001622928009.2345433-CDS-E-fasciculatus_F_contig15293:2083..2200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15293 2084..2200 -
1695995787.1046655-CDS-E-fasciculatus_F_contig15293:2083..22001695995787.1046655-CDS-E-fasciculatus_F_contig15293:2083..2200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15293 2084..2200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15293.3732.1prot_E-fasciculatus_F_contig15293.3732.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15293 2084..2200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15293.3732.1

>prot_E-fasciculatus_F_contig15293.3732.1 ID=prot_E-fasciculatus_F_contig15293.3732.1|Name=mRNA_E-fasciculatus_F_contig15293.3732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=39bp
ELNELVSSYQGLRDNGARGPSIVSASIACARTCNLDKDI
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mRNA from alignment at E-fasciculatus_F_contig15293:2084..2200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15293.3732.1 ID=mRNA_E-fasciculatus_F_contig15293.3732.1|Name=mRNA_E-fasciculatus_F_contig15293.3732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=117bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15293:2084..2200- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCTGAACGAGCTGGTATCTTCGTACCAGGGCCTCCGCGACAACGGGGC
TCGCGGCCCTTCAATCGTTAGCGCTTCCATCGCGTGCGCCCGAACGTGCA
ACCTTGACAAGGACATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15293:2084..2200-

>mRNA_E-fasciculatus_F_contig15293.3732.1 ID=mRNA_E-fasciculatus_F_contig15293.3732.1|Name=mRNA_E-fasciculatus_F_contig15293.3732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15293:2084..2200- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCTGAACGAGCTGGTATCTTCGTACCAGGGCCTCCGCGACAACGGGGC
TCGCGGCCCTTCAATCGTTAGCGCTTCCATCGCGTGCGCCCGAACGTGCA
ACCTTGACAAGGACATCGAGCTGAACGAGCTGGTATCTTCGTACCAGGGC
CTCCGCGACAACGGGGCTCGCGGCCCTTCAATCGTTAGCGCTTCCATCGC
GTGCGCCCGAACGTGCAACCTTGACAAGGACATC
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