mRNA_E-fasciculatus_F_contig15290.3729.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15290.3729.1
Unique NamemRNA_E-fasciculatus_F_contig15290.3729.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15290.3729.1 vs. uniprot
Match: A0A6H5L123_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L123_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 5.630e-96
Identity = 215/262 (82.06%), Postives = 219/262 (83.59%), Query Frame = 1 
Query:    1 YIPEDDTDASLLAQVADATTESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GAAASPVRSEDGNFVDGVGARLGVGGGRGGASAGAKRRINLSDHHGVAAEFTARDPEGGXXXXXXXXXXXIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLAGGAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLKEVFQT 765
            +IP+DDTDASLLAQVAD  TESR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           AAASPVRSEDGNFVDGVGA L           GAKRRINLSDHHGV AEFTARDPEG            +DGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEA NRRTSHLRTAKALATLWLALLAGGA+AKSD G MGYIARGAAGVFGG LCTAASALFLLYWFSAKEEVQGLKEVFQT
Sbjct:  332 HIPQDDTDASLLAQVADTRTESRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSQPRGGVRAAAASPVRSEDGNFVDGVGAGLXXXXXXXXXXDGAKRRINLSDHHGVGAEFTARDPEGDDDDNHSSLDDDVDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEALNRRTSHLRTAKALATLWLALLAGGAMAKSD-GSMGYIARGAAGVFGGVLCTAASALFLLYWFSAKEEVQGLKEVFQT 592
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BLAST of mRNA_E-fasciculatus_F_contig15290.3729.1 vs. uniprot
Match: D8LH10_ECTSI (Similar to neutral Sphingomyelinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH10_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 3.100e-75
Identity = 131/147 (89.12%), Postives = 132/147 (89.80%), Query Frame = 1 
Query:  325 HHGVAAEFTARDPEGGXXXXXXXXXXXIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLAGGAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLKEVFQT 765
            H  VAAEFTARDPEGG  XX       IDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRT HLRTAKALATLWLALLAGGAVAKSD G MGYIARGAAGVFGG LCTAASALFLLYWFSAK+EVQGLKEVFQT
Sbjct:  336 HRAVAAEFTARDPEGGDDXXHSSLDDDIDGMPPPRRGLRHSQSIPGGTFPQGPLLARALTEIDRGIEEASNRRTCHLRTAKALATLWLALLAGGAVAKSD-GLMGYIARGAAGVFGGVLCTAASALFLLYWFSAKQEVQGLKEVFQT 481
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15290.3729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L123_9PHAE5.630e-9682.06Endo/exonuclease/phosphatase domain-containing pro... [more]
D8LH10_ECTSI3.100e-7589.12Similar to neutral Sphingomyelinase, putative n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15290contigE-fasciculatus_F_contig15290:602..2870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.1
Seed ortholog evalue1.7e-62
Seed eggNOG ortholog2880.D8LH10
Preferred nameSMPD2
KEGG rclassRC00017,RC00425
KEGG koko:K01117,ko:K12351,ko:K12818
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko03040,ko04071,map00600,map01100,map03040,map04071
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004620,GO:0004629,GO:0004767,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019637,GO:0019867,GO:0023052,GO:0030148,GO:0030149,GO:0031090,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032995,GO:0034248,GO:0034250,GO:0034641,GO:0035556,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045834,GO:0046466,GO:0046467,GO:0046513,GO:0046519,GO:0046521,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051716,GO:0052712,GO:0052713,GO:0052714,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090154,GO:0097164,GO:0098573,GO:0098588,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903338,GO:1905038,GO:2000303,GO:2000304
EggNOG free text desc.inositol phosphosphingolipid phospholipase activity
EggNOG OGsKOG3873@1,KOG3873@2759
EC3.1.4.12,3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size768
Cds size768
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15290.3729.1prot_E-fasciculatus_F_contig15290.3729.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15290 602..2870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.9965923-CDS-E-fasciculatus_F_contig15290:601..9341622928008.9965923-CDS-E-fasciculatus_F_contig15290:601..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 602..934 +
1695995786.9978905-CDS-E-fasciculatus_F_contig15290:601..9341695995786.9978905-CDS-E-fasciculatus_F_contig15290:601..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 602..934 +
1622928009.007683-CDS-E-fasciculatus_F_contig15290:1428..15721622928009.007683-CDS-E-fasciculatus_F_contig15290:1428..1572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 1429..1572 +
1695995787.017965-CDS-E-fasciculatus_F_contig15290:1428..15721695995787.017965-CDS-E-fasciculatus_F_contig15290:1428..1572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 1429..1572 +
1622928009.0202274-CDS-E-fasciculatus_F_contig15290:1984..21451622928009.0202274-CDS-E-fasciculatus_F_contig15290:1984..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 1985..2145 +
1695995787.0284967-CDS-E-fasciculatus_F_contig15290:1984..21451695995787.0284967-CDS-E-fasciculatus_F_contig15290:1984..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 1985..2145 +
1622928009.0356321-CDS-E-fasciculatus_F_contig15290:2740..28701622928009.0356321-CDS-E-fasciculatus_F_contig15290:2740..2870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 2741..2870 +
1695995787.0393767-CDS-E-fasciculatus_F_contig15290:2740..28701695995787.0393767-CDS-E-fasciculatus_F_contig15290:2740..2870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15290 2741..2870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15290.3729.1

>prot_E-fasciculatus_F_contig15290.3729.1 ID=prot_E-fasciculatus_F_contig15290.3729.1|Name=mRNA_E-fasciculatus_F_contig15290.3729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
YIPEDDTDASLLAQVADATTESRNNNNNTSPGAPQRRGRGGAEAAALASP
LMGSSNSSSRDSQPPGAAASPVRSEDGNFVDGVGARLGVGGGRGGASAGA
KRRINLSDHHGVAAEFTARDPEGGDDDDDNSLDDDIDGMPPPRRGLRHSQ
SIPGGTFPQGPLLARALTEIDRGIEEASNRRTSHLRTAKALATLWLALLA
GGAVAKSDDGFMGYIARGAAGVFGGFLCTAASALFLLYWFSAKEEVQGLK
EVFQT*
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mRNA from alignment at E-fasciculatus_F_contig15290:602..2870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15290.3729.1 ID=mRNA_E-fasciculatus_F_contig15290.3729.1|Name=mRNA_E-fasciculatus_F_contig15290.3729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2269bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15290:602..2870+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACATCCCGGAAGATGACACCGATGCTAGCCTGCTCGCCCAAGTCGCCGA
CGCGACTACGGAGAGCCGCAACAACAACAACAACACCTCGCCAGGGGCCC
CGCAGCGGCGTGGGAGGGGGGGGGCAGAGGCGGCAGCATTGGCGTCGCCG
CTCATGGGCAGCAGCAACAGCAGCAGCAGGGATAGCCAGCCCCCGGGGGC
GGCAGCGTCGCCCGTGCGATCAGAGGACGGGAATTTCGTGGACGGTGTTG
GGGCTAGGTTGGGTGTGGGCGGGGGTAGGGGCGGAGCGAGCGCGGGAGCG
AAACGCAGGATCAATTTGTCCGACCACCACGGGGTGAGGCGAGGACTTTA
GCCGCGATGCCGCCCAGGCTGGGCTTGTTTCTCGCAGAGGGCGTCTCATG
GCATGGTTGGCTGTTGCTTTGGCCGGGACGATGGCGGCATCGATTGAGAT
ATGTTAGTTATAGTTTTTTTTTTTCGCGAGATGGATAGTCTTACGGTCGG
TCGCCTTGGCGTAATCGATACACGTTTCCCTTCTTGTCGCCCTCACGATG
TGGTACCCCCCTCCTCCTCCGGTTCATCCTCGTGACAAAATAGCCTGGGC
CGGCGAGAAACCGGCGTATCCCTCCGTCCGGGCATTGTGGGGATGCGAGG
TCAATGGTCTAACGATTCCGGCATGCGTTGGCATGAGCACCCCCCTCCCC
CCCTCCAAAGAAAAATACCCACGGTGCCCCAAGTATGCTTCCTCATCTCT
CAGTCTTATTGCGCCTCGAACTCGCGTGTGTTTCTGCGCCCTGCTCCTAA
CCCTCACCCTGCTCCTTGCTGTGGCAGGTTGCCGCGGAGTTTACGGCTAG
AGATCCCGAAGGCGGCGACGACGACGACGACAACTCGCTGGACGACGACA
TCGACGGGATGCCCCCGCCACGCCGGGGCTTGCGGCACTCCCAATCCATC
CCGGGAGGGACGTTTCCTCAGGTGCTGATTAGTGGTCTTCGTATTGCCAC
CTGGACGCTGCTGCATCCAAGCTGTGTTCGTTTGCGTATGTGTTGCCATT
GTGGCAGTGGTGTGTTGTGTGTTGTGTTGATCCGTCGTGGTGCTGAAGAC
CTAGACTAATCCTTTTTTTGTTCTTGTTTGGGGTGGCGTGTGGCCCGGAG
TGCTTCTCATCTCCCTCCGAGAGGGTATTGGTAAGGGAGAGGAGGCGTTG
GAAGTTGGAGGTGGTCGGGGTGAAATTTTGACGAGAAGAAAGCACCCAAC
CCTCCCCGCAGTCACGCTACTGTTGCTGTAAAAAAAAACGCCCTGTCGGG
AGAAACCAACCCAGCTCCTCTCCTCTCCTCTCTGTCGCACCCTCTCTCTC
TCCCCCCTGGCCTTCCGGGGACCAACCACACAGGGGCCGCTGCTAGCGCG
AGCGTTGACTGAAATCGATCGTGGGATCGAGGAGGCGTCAAACCGAAGGA
CTTCCCACCTGCGCACCGCTAAGGCTCTGGCGACGCTATGGCTGGCACTG
CTGGCTGGCGGAGCCGTGGCCAAATCGGATGACGGTTTCATGGGGTGAGA
AAGACTCTCTCTCTCTCCGGTGGTGGGGAGTGGGGACGATTTCCTCTGTG
TTTTTTTCGCATGCTTTTCCCCGGGGGGCGGGGGTACCCATGTTTAGGGT
GCCTTAGTTGTTAGACGGTTGACCACGCGTCCTCGAGAGGACGGAGCATG
CTTTCGTTTTTCGTTTTTTTTTTTTCATTTTTTTCCCGGTGGAGGGAGGG
AAGGTTTTCATGCAGGAAACCCGTGGGATTGATGGAGCCACATAACGCCG
GGGCACGGTGCGCGAAAGTTAAAGTTCGTTGCTGCAGTCTGCGGAACATG
TACTGCTGTTGCGGGTAAACCTACCGCTTTGTTGTTTTTGTCGCGACAAC
TGGGGGGAAGTGCCGGTTTGCGGGTCTATTTTTTGGAGGCGTGTGTTATT
GCGCCGGGCACACTCTACATACGGGCGGGCGGTGGTACGAATTTCACTCA
TGCCCTCTTCTGCTTGGAGTTCGGTGTTGTCGTCATCAAAAGACGCTGCT
CCTTGTACGTGGCGACGATACTATTTCTTCACTAAACCTTTTTATCTGCC
GGTGTCGGTGTCTTGATTCAATCCCCTCGGACTCCCCAGGTACATCGCGA
GAGGAGCGGCTGGGGTGTTTGGGGGTTTCCTGTGCACAGCGGCGTCGGCG
TTGTTTCTGCTGTACTGGTTCTCGGCGAAGGAGGAGGTTCAAGGACTGAA
GGAGGTATTCCAGACGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15290:602..2870+

>mRNA_E-fasciculatus_F_contig15290.3729.1 ID=mRNA_E-fasciculatus_F_contig15290.3729.1|Name=mRNA_E-fasciculatus_F_contig15290.3729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15290:602..2870+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACATCCCGGAAGATGACACCGATGCTAGCCTGCTCGCCCAAGTCGCCGA
CGCGACTACGGAGAGCCGCAACAACAACAACAACACCTCGCCAGGGGCCC
CGCAGCGGCGTGGGAGGGGGGGGGCAGAGGCGGCAGCATTGGCGTCGCCG
CTCATGGGCAGCAGCAACAGCAGCAGCAGGGATAGCCAGCCCCCGGGGGC
GGCAGCGTCGCCCGTGCGATCAGAGGACGGGAATTTCGTGGACGGTGTTG
GGGCTAGGTTGGGTGTGGGCGGGGGTAGGGGCGGAGCGAGCGCGGGAGCG
AAACGCAGGATCAATTTGTCCGACCACCACGGGTACATCCCGGAAGATGA
CACCGATGCTAGCCTGCTCGCCCAAGTCGCCGACGCGACTACGGAGAGCC
GCAACAACAACAACAACACCTCGCCAGGGGCCCCGCAGCGGCGTGGGAGG
GGGGGGGCAGAGGCGGCAGCATTGGCGTCGCCGCTCATGGGCAGCAGCAA
CAGCAGCAGCAGGGATAGCCAGCCCCCGGGGGCGGCAGCGTCGCCCGTGC
GATCAGAGGACGGGAATTTCGTGGACGGTGTTGGGGCTAGGTTGGGTGTG
GGCGGGGGTAGGGGCGGAGCGAGCGCGGGAGCGAAACGCAGGATCAATTT
GTCCGACCACCACGGGGTTGCCGCGGAGTTTACGGCTAGAGATCCCGAAG
GCGGCGACGACGACGACGACAACTCGCTGGACGACGACATCGACGGGATG
CCCCCGCCACGCCGGGGCTTGCGGCACTCCCAATCCATCCCGGGAGGGAC
GTTTCCTCAGGTTGCCGCGGAGTTTACGGCTAGAGATCCCGAAGGCGGCG
ACGACGACGACGACAACTCGCTGGACGACGACATCGACGGGATGCCCCCG
CCACGCCGGGGCTTGCGGCACTCCCAATCCATCCCGGGAGGGACGTTTCC
TCAGGGGCCGCTGCTAGCGCGAGCGTTGACTGAAATCGATCGTGGGATCG
AGGAGGCGTCAAACCGAAGGACTTCCCACCTGCGCACCGCTAAGGCTCTG
GCGACGCTATGGCTGGCACTGCTGGCTGGCGGAGCCGTGGCCAAATCGGA
TGACGGTTTCATGGGGGGCCGCTGCTAGCGCGAGCGTTGACTGAAATCGA
TCGTGGGATCGAGGAGGCGTCAAACCGAAGGACTTCCCACCTGCGCACCG
CTAAGGCTCTGGCGACGCTATGGCTGGCACTGCTGGCTGGCGGAGCCGTG
GCCAAATCGGATGACGGTTTCATGGGGTACATCGCGAGAGGAGCGGCTGG
GGTGTTTGGGGGTTTCCTGTGCACAGCGGCGTCGGCGTTGTTTCTGCTGT
ACTGGTTCTCGGCGAAGGAGGAGGTTCAAGGACTGAAGGAGGTATTCCAG
ACGTAAGTACATCGCGAGAGGAGCGGCTGGGGTGTTTGGGGGTTTCCTGT
GCACAGCGGCGTCGGCGTTGTTTCTGCTGTACTGGTTCTCGGCGAAGGAG
GAGGTTCAAGGACTGAAGGAGGTATTCCAGACGTAA
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