mRNA_E-fasciculatus_F_contig15280.3722.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15280.3722.1
Unique NamemRNA_E-fasciculatus_F_contig15280.3722.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A6H5L2L9_9PHAE (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.650e-24
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEASVSTKE 147
            +VNDFPPLFRLLDAHAIWHFATIPLMFHWY FVIQDARHE ++S+KE
Sbjct:  141 EVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSSKE 187
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: D8LDA6_ECTSI (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 5.080e-24
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEASVSTKET 150
            +VNDFPPLFRLLDAHAIWHFATIPLMFHWY FVIQDARHE ++STKET
Sbjct:  434 EVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET 481
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: S2JL11_MUCC1 (Post-GPI attachment to proteins factor 3 n=4 Tax=Mucor TaxID=4830 RepID=S2JL11_MUCC1)

HSP 1 Score: 69.7 bits (169), Expect = 8.990e-13
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 CRQVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEASVST 141
            C ++ DFPPLFR+ DAH++WH +TIPL   WY+F++QD +HE +  +
Sbjct:  264 CLELFDFPPLFRVFDAHSLWHLSTIPLSIVWYKFLLQDTKHETNTKS 310
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A8H8A1R5_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A1R5_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 5.450e-12
Identity = 23/41 (56.10%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEA 129
            ++ DFPPL+  LDAHA+WH A+IP++ +WYRF+++DAR E+
Sbjct:   16 EIFDFPPLYGALDAHALWHAASIPVIPYWYRFLVRDARWES 56
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A8Q0Q1_MALGO (Post-GPI attachment to proteins factor 3 n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8Q0Q1_MALGO)

HSP 1 Score: 66.6 bits (161), Expect = 1.510e-11
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDAR 120
            ++ DFPPLFRLLDAHA+WH AT+PL   WYR++++DAR
Sbjct:  304 ELFDFPPLFRLLDAHALWHLATVPLTLCWYRWLLEDAR 341
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A7J6PDI6_PEROL (Post-GPI attachment to proteins factor 3 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PDI6_PEROL)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 29/51 (56.86%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDA----RHEASVSTKE 147
            ++NDFPP F LLDAHA WHF T+PL F WYRFV  D     RH  S    E
Sbjct:  877 ELNDFPPYFLLLDAHACWHFTTVPLQFVWYRFVEDDLLWEMRHRVSAKDDE 927
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A1Y1XT47_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XT47_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 3.020e-11
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEAS 132
            ++ DFPPLF +LDAH++WH ATIP++F+WY F+I+DA  ++S
Sbjct:  263 ELFDFPPLFMVLDAHSLWHAATIPIIFYWYTFLIEDAYWDSS 304
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A0B7NDV7_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NDV7_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-11
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 CRQVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEASVST 141
            C ++ DF PLFR+ DAH++WH ATIPL   WYRF+I D+ +EA+ ++
Sbjct:  200 CLELFDFFPLFRVFDAHSLWHLATIPLSIVWYRFLIADSTNEANTNS 246
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A1X2G5B5_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G5B5_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 4.240e-11
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHE 126
            ++ DFPPLFR+LDAH++WH +TIPL   W++FV+ D +HE
Sbjct:  262 ELLDFPPLFRILDAHSLWHMSTIPLNIVWFKFVLHDTQHE 301
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BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Match: A0A1Y1Y4X4_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4X4_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 5.860e-11
Identity = 21/42 (50.00%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEAS 132
            ++ DFPP+F  LDAH++WH AT+P++F+WY ++I+DAR +++
Sbjct:  267 ELFDFPPIFEALDAHSLWHAATVPILFYWYTYLIEDARWDST 308
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15280.3722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L9_9PHAE1.650e-2487.23Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
D8LDA6_ECTSI5.080e-2489.58Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
S2JL11_MUCC18.990e-1351.06Post-GPI attachment to proteins factor 3 n=4 Tax=M... [more]
A0A8H8A1R5_9FUNG5.450e-1256.10Post-GPI attachment to proteins factor 3 n=1 Tax=O... [more]
A8Q0Q1_MALGO1.510e-1165.79Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]
A0A7J6PDI6_PEROL2.100e-1156.86Post-GPI attachment to proteins factor 3 n=2 Tax=P... [more]
A0A1Y1XT47_9FUNG3.020e-1157.14Post-GPI attachment to proteins factor 3 n=1 Tax=B... [more]
A0A0B7NDV7_9FUNG3.920e-1153.19Post-GPI attachment to proteins factor 3 n=1 Tax=P... [more]
A0A1X2G5B5_9FUNG4.240e-1157.50Post-GPI attachment to proteins factor 3 n=1 Tax=H... [more]
A0A1Y1Y4X4_9FUNG5.860e-1150.00Post-GPI attachment to proteins factor 3 n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15280contigE-fasciculatus_F_contig15280:118..270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LDA6
Preferred namePGAP3
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019538,GO:0019637,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0090407,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.GPI anchor metabolic process
EggNOG OGsCOG5237@1,KOG2970@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.367437-CDS-E-fasciculatus_F_contig15280:117..2701622928008.367437-CDS-E-fasciculatus_F_contig15280:117..270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15280 118..270 +
1695995786.6664367-CDS-E-fasciculatus_F_contig15280:117..2701695995786.6664367-CDS-E-fasciculatus_F_contig15280:117..270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15280 118..270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15280.3722.1prot_E-fasciculatus_F_contig15280.3722.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15280 118..270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15280.3722.1

>prot_E-fasciculatus_F_contig15280.3722.1 ID=prot_E-fasciculatus_F_contig15280.3722.1|Name=mRNA_E-fasciculatus_F_contig15280.3722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp
CRQVNDFPPLFRLLDAHAIWHFATIPLMFHWYRFVIQDARHEASVSTKET
*
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mRNA from alignment at E-fasciculatus_F_contig15280:118..270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15280.3722.1 ID=mRNA_E-fasciculatus_F_contig15280.3722.1|Name=mRNA_E-fasciculatus_F_contig15280.3722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15280:118..270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCGACAGGTGAACGACTTCCCCCCCCTGTTCCGCCTGCTCGACGCCCA
CGCCATCTGGCACTTCGCGACGATCCCGCTCATGTTCCACTGGTACCGCT
TCGTCATCCAGGACGCCAGACACGAGGCCAGTGTGTCCACGAAAGAAACC
TAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15280:118..270+

>mRNA_E-fasciculatus_F_contig15280.3722.1 ID=mRNA_E-fasciculatus_F_contig15280.3722.1|Name=mRNA_E-fasciculatus_F_contig15280.3722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15280:118..270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCGACAGGTGAACGACTTCCCCCCCCTGTTCCGCCTGCTCGACGCCCA
CGCCATCTGGCACTTCGCGACGATCCCGCTCATGTTCCACTGGTACCGCT
TCGTCATCCAGGACGCCAGACACGAGGCCAGTGTGTCCACGAAAGAAACC
TAGTGTCGACAGGTGAACGACTTCCCCCCCCTGTTCCGCCTGCTCGACGC
CCACGCCATCTGGCACTTCGCGACGATCCCGCTCATGTTCCACTGGTACC
GCTTCGTCATCCAGGACGCCAGACACGAGGCCAGTGTGTCCACGAAAGAA
ACCTAG
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