mRNA_E-fasciculatus_F_contig15273.3718.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15273.3718.1
Unique NamemRNA_E-fasciculatus_F_contig15273.3718.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15273.3718.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 2.910e-136
Identity = 309/401 (77.06%), Postives = 317/401 (79.05%), Query Frame = 1 
Query:  319 RLGFAAEVPRLAGGQIKTRCWKGGPTSSSEVQ-RTGLFEWGMVATSTSWRLGSSXXXXXXXXXXTTPSNPDTWRNRSERPPAVSSDTDGSSGAVXXXXXXXXXXXAYSALCPALHGADYGWSFPAGAEPPPTQXXXXXXXXXXXRIPPVGRRRGATEAERKAPGRGMALAADATGXXXXXDSPAGAHAATAVLTVEGDGPEELSGRRAAAPG-AAPPQPLPPGRAGAATGAFGGVRFDAAASAERSSSGGDLTAGAGRVDPDEVRRATVNTGGGRSXXXXXXXXXXXXXXXXXXXXXXXX----RPRGGGVATFESAEDKALRQMLLEATKSGRGGVALRALRLMVEENLLVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR 1503
            RLGFAAEVPRLAGGQIKTR WK   +SSSEVQ R GL EWG+VATSTSWRLGSS  XXXXXXXXT  SN DTWR+RSERPPAVSSD DGS  A    XXXXXXXXAYSALCPALHG    W FP   EPP   XXX        R PPVGRR  A E E K PGRG AL ADATG     DS  GA AATAVLTVEGDG EELSGRR AAPG AA P+P PPGRAGAATGAFGGVRFD AASAE  S G  +T GAGRVDP E  RA V+TGGGRS    XXXXXXXXXXXXXXXXXX      R RGGG ATFESAED+ALRQ+LLEATKSGRGGVALRALRLMVEENL VSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR
Sbjct:  131 RLGFAAEVPRLAGGQIKTRWWKVSASSSSEVQQRRGLSEWGVVATSTSWRLGSSTTXXXXXXXXTPSSNADTWRHRSERPPAVSSDADGSGAA--DTXXXXXXXXAYSALCPALHG----WPFPEVVEPP-XXXXXVGRERERERPPPVGRRPSAAEVEAKVPGRGTALTADATGVASAADSH-GARAATAVLTVEGDGQEELSGRRVAAPGVAAAPRP-PPGRAGAATGAFGGVRFDVAASAEGGSGG--VTGGAGRVDPGEGGRAAVSTGGGRSGDSGXXXXXXXXXXXXXXXXXXKRATRKRLRGGGAATFESAEDRALRQLLLEATKSGRGGVALRALRLMVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR 520
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BLAST of mRNA_E-fasciculatus_F_contig15273.3718.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.410e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query: 1333 MVEENLLVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR 1503
            MVEENL VSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR
Sbjct:    1 MVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLAR 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15273.3718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7F1_9PHAE2.910e-13677.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV9_ECTSI7.410e-2398.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15273contigE-fasciculatus_F_contig15273:1..2447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D8LBV9
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1506
Cds size1506
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15273.3718.1prot_E-fasciculatus_F_contig15273.3718.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15273 1..2447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.9260783-CDS-E-fasciculatus_F_contig15273:0..13351622928007.9260783-CDS-E-fasciculatus_F_contig15273:0..1335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 1..1335 +
1695995786.4736495-CDS-E-fasciculatus_F_contig15273:0..13351695995786.4736495-CDS-E-fasciculatus_F_contig15273:0..1335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 1..1335 +
1622928007.9447637-CDS-E-fasciculatus_F_contig15273:2072..21381622928007.9447637-CDS-E-fasciculatus_F_contig15273:2072..2138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 2073..2138 +
1695995786.4856262-CDS-E-fasciculatus_F_contig15273:2072..21381695995786.4856262-CDS-E-fasciculatus_F_contig15273:2072..2138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 2073..2138 +
1622928007.9616735-CDS-E-fasciculatus_F_contig15273:2342..24471622928007.9616735-CDS-E-fasciculatus_F_contig15273:2342..2447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 2343..2447 +
1695995786.4940014-CDS-E-fasciculatus_F_contig15273:2342..24471695995786.4940014-CDS-E-fasciculatus_F_contig15273:2342..2447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15273 2343..2447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15273.3718.1

>prot_E-fasciculatus_F_contig15273.3718.1 ID=prot_E-fasciculatus_F_contig15273.3718.1|Name=mRNA_E-fasciculatus_F_contig15273.3718.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=502bp
VVLASTAAATTTAASGGPAAVAPPPRRPTAAFTSPTSGNRSSSPERRRDG
RGRAGDGDGLGLGFESNTAGVMRTRGHPPGTAAAGRRRRSLALLSSRLGS
SSGSSSRLGFAAEVPRLAGGQIKTRCWKGGPTSSSEVQRTGLFEWGMVAT
STSWRLGSSSTTKRAGGNDTTPSNPDTWRNRSERPPAVSSDTDGSSGAVT
AAAAAAAAAAAYSALCPALHGADYGWSFPAGAEPPPTQQQQEGRERERER
IPPVGRRRGATEAERKAPGRGMALAADATGVAAAADSPAGAHAATAVLTV
EGDGPEELSGRRAAAPGAAPPQPLPPGRAGAATGAFGGVRFDAAASAERS
SSGGDLTAGAGRVDPDEVRRATVNTGGGRSGGSGSGGGGTGGGGSGGRKR
AARKRPRGGGVATFESAEDKALRQMLLEATKSGRGGVALRALRLMVEENL
LVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLA
R*
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mRNA from alignment at E-fasciculatus_F_contig15273:1..2447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15273.3718.1 ID=mRNA_E-fasciculatus_F_contig15273.3718.1|Name=mRNA_E-fasciculatus_F_contig15273.3718.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2447bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15273:1..2447+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGTTGGCGTCCACCGCCGCGGCCACAACGACGGCCGCCTCCGGCGG
GCCGGCGGCGGTGGCGCCGCCGCCTCGCCGCCCCACGGCTGCTTTCACCT
CCCCCACCAGCGGGAACCGAAGCAGCAGTCCGGAGAGAAGGCGCGACGGA
CGAGGAAGAGCTGGCGATGGTGATGGCCTAGGGCTAGGTTTCGAAAGCAA
CACGGCGGGCGTGATGCGGACCCGTGGCCACCCCCCGGGTACTGCCGCCG
CCGGGCGGCGGCGGCGCTCGTTGGCGCTCTTGTCTTCCCGGCTTGGCAGC
AGCAGCGGCAGCAGCAGCAGGCTAGGCTTTGCGGCAGAGGTGCCCCGATT
AGCGGGGGGACAGATCAAGACCAGGTGCTGGAAGGGCGGGCCAACCTCCT
CGAGCGAGGTGCAACGGACAGGCTTGTTCGAGTGGGGCATGGTCGCGACG
TCGACCTCATGGCGGCTTGGCAGCAGCAGCACGACCAAACGGGCGGGGGG
CAACGACACGACCCCGTCCAATCCGGACACCTGGAGAAATCGATCCGAAC
GTCCGCCCGCCGTATCGAGCGATACCGATGGTAGTAGTGGCGCGGTGACG
GCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGTATTCGGCGCTGTGTCC
GGCGCTCCACGGTGCAGACTATGGTTGGTCCTTTCCGGCGGGTGCAGAAC
CACCCCCCACACAGCAGCAGCAGGAAGGACGAGAGCGGGAGCGGGAGCGG
ATCCCCCCGGTGGGCAGAAGACGCGGCGCTACCGAGGCAGAGAGGAAAGC
GCCAGGAAGAGGAATGGCTCTGGCGGCCGACGCCACCGGCGTTGCTGCCG
CCGCTGATTCCCCCGCCGGTGCGCATGCCGCCACCGCGGTGTTGACCGTG
GAAGGAGACGGGCCAGAGGAACTGTCCGGCCGCAGGGCAGCGGCGCCTGG
GGCGGCGCCGCCGCAGCCGCTGCCTCCCGGCCGCGCTGGTGCGGCGACTG
GCGCGTTCGGCGGGGTTCGTTTCGACGCCGCGGCAAGCGCGGAGCGCAGC
AGCAGCGGTGGTGATTTGACGGCCGGTGCCGGTAGGGTCGACCCAGACGA
AGTCAGGAGGGCTACGGTCAACACCGGCGGCGGCCGCAGCGGCGGTAGCG
GTAGCGGCGGCGGTGGTACCGGTGGCGGTGGTAGCGGCGGCCGTAAGAGG
GCGGCAAGAAAGAGGCCGAGGGGCGGTGGCGTGGCTACCTTTGAATCAGC
GGAAGATAAAGCTCTGAGGCAGATGTTGCTGGAGGCGACCAAGAGCGGGA
GAGGGGGTGTCGCGCTACGGGCGCTGCGGCTCATGGTGAGAGTCGTTTTT
TTTGTTGGTCTCCTTTTTACAAATGGTACCCAAATAGACGCGAAACGTCT
TCGACCGGTCCCCCCCCGAATGGAAGCTTAAGCGGTTTCTTTTTGATCGG
ACCGTAAGCATGATTCGAGCCGGGCTGGTAGAAAAATGCTTTCACCTATT
AGGACCGATACCGAGAACGGGGATTGGCCGACTTCGTTTATGCCGATGTT
GTCGAGTTTTTTTTTTTTCTGTTTGGGTCCCCTATTGGATGGCGTCCTAG
GCGTGTGCCTAGAAACATATCCTGCTCCTTTGCTCCTTAGACGAACCACG
TGTTCGGCAACAGCGTCCAGCTACAAGTAGGGTCAGGGTTAAGGGTCTTC
GGGTTAGGCTACAAGTATCATGAGTGAAGGGTGCAAGAGACGCTTGCGGG
CTACCGAGAGTGCGTCCGCGGCGGAAAATCGTGTGTTTGAGCTTTTTCGT
CGGAAGACGATCGGGGCTATCGCTCGTGCCATGGGGGGGGTCGTTGCCAC
ACACGGGGCTAGCTTCTAGTGGTGCGCGCCAAGGAGGCTTGTACGAGGAC
CATTCCTCGGTGCAGATTTCGCGTCGATGATGCCGTCGTCGTTTTTCTTG
GCTCATTTTCCTCCTGCGTATCCCGTCTGACCTGTACCTTCTTTGGTCCC
CTTTGATGTGGCGACTGACGGCGATGATACGGCGATGATTCGTCCGGTAT
TTTTTTTTTCATTTGTTTCCAGGTGGAGGAAAACCTTTTGGTGAGCCAAA
AGCAGTACGTCGGCGCGATGGAGGCGTGCATGCGACAGGTGAGAAGCGAG
CGAGAGAGAATGAGGGGAAGAGAGAGGGGGGGCACCGTGAAATGGGGGGA
AATTGCTAAATAAACATTTGGAGAGAGAGCATGCTGCCGTGTACGGGTCG
TGTTTTTCCTACGCGTACGCCCCCGAACGAGGCCCAAAATGAAATTGTGT
CAATTTTTTGTTAACCTTGTTGACCTTCGAAATATATCTCAGGGCTCTTG
GACGTCCGGCCTTGAGGTGTTCCGGCTTCTCCTCGAGGACCTTCGGCCGA
GGGGGCTCAGCCCCAAGCAGTCCACCTGGAGGTCACTTGCGAGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15273:1..2447+

>mRNA_E-fasciculatus_F_contig15273.3718.1 ID=mRNA_E-fasciculatus_F_contig15273.3718.1|Name=mRNA_E-fasciculatus_F_contig15273.3718.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15273:1..2447+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGTTGGCGTCCACCGCCGCGGCCACAACGACGGCCGCCTCCGGCGG
GCCGGCGGCGGTGGCGCCGCCGCCTCGCCGCCCCACGGCTGCTTTCACCT
CCCCCACCAGCGGGAACCGAAGCAGCAGTCCGGAGAGAAGGCGCGACGGA
CGAGGAAGAGCTGGCGATGGTGATGGCCTAGGGCTAGGTTTCGAAAGCAA
CACGGCGGGCGTGATGCGGACCCGTGGCCACCCCCCGGGTACTGCCGCCG
CCGGGCGGCGGCGGCGCTCGTTGGCGCTCTTGTCTTCCCGGCTTGGCAGC
AGCAGCGGCAGCAGCAGCAGGCTAGGCTTTGCGGCAGAGGTGCCCCGATT
AGCGGGGGGACAGATCAAGACCAGGTGCTGGAAGGGCGGGCCAACCTCCT
CGAGCGAGGTGCAACGGACAGGCTTGTTCGAGTGGGGCATGGTCGCGACG
TCGACCTCATGGCGGCTTGGCAGCAGCAGCACGACCAAACGGGCGGGGGG
CAACGACACGACCCCGTCCAATCCGGACACCTGGAGAAATCGATCCGAAC
GTCCGCCCGCCGTATCGAGCGATACCGATGGTAGTAGTGGCGCGGTGACG
GCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGTATTCGGCGCTGTGTCC
GGCGCTCCACGGTGCAGACTATGGTTGGTCCTTTCCGGCGGGTGCAGAAC
CACCCCCCACACAGCAGCAGCAGGAAGGACGAGAGCGGGAGCGGGAGCGG
ATCCCCCCGGTGGGCAGAAGACGCGGCGCTACCGAGGCAGAGAGGAAAGC
GCCAGGAAGAGGAATGGCTCTGGCGGCCGACGCCACCGGCGTTGCTGCCG
CCGCTGATTCCCCCGCCGGTGCGCATGCCGCCACCGCGGTGTTGACCGTG
GAAGGAGACGGGCCAGAGGAACTGTCCGGCCGCAGGGCAGCGGCGCCTGG
GGCGGCGCCGCCGCAGCCGCTGCCTCCCGGCCGCGCTGGTGCGGCGACTG
GCGCGTTCGGCGGGGTTCGTTTCGACGCCGCGGCAAGCGCGGAGCGCAGC
AGCAGCGGTGGTGATTTGACGGCCGGTGCCGGTAGGGTCGACCCAGACGA
AGTCAGGAGGGCTACGGTCAACACCGGCGGCGGCCGCAGCGGCGGTAGCG
GTAGCGGCGGCGGTGGTACCGGTGGCGGTGGTAGCGGCGGCCGTAAGAGG
GCGGCAAGAAAGAGGCCGAGGGGCGGTGGCGTGGCTACCTTTGAATCAGC
GGAAGATAAAGCTCTGAGGCAGATGTTGCTGGAGGCGACCAAGAGCGGGA
GAGGGGGTGTCGCGCTACGGGCGCTGCGGCTCATGGTGGTGTTGGCGTCC
ACCGCCGCGGCCACAACGACGGCCGCCTCCGGCGGGCCGGCGGCGGTGGC
GCCGCCGCCTCGCCGCCCCACGGCTGCTTTCACCTCCCCCACCAGCGGGA
ACCGAAGCAGCAGTCCGGAGAGAAGGCGCGACGGACGAGGAAGAGCTGGC
GATGGTGATGGCCTAGGGCTAGGTTTCGAAAGCAACACGGCGGGCGTGAT
GCGGACCCGTGGCCACCCCCCGGGTACTGCCGCCGCCGGGCGGCGGCGGC
GCTCGTTGGCGCTCTTGTCTTCCCGGCTTGGCAGCAGCAGCGGCAGCAGC
AGCAGGCTAGGCTTTGCGGCAGAGGTGCCCCGATTAGCGGGGGGACAGAT
CAAGACCAGGTGCTGGAAGGGCGGGCCAACCTCCTCGAGCGAGGTGCAAC
GGACAGGCTTGTTCGAGTGGGGCATGGTCGCGACGTCGACCTCATGGCGG
CTTGGCAGCAGCAGCACGACCAAACGGGCGGGGGGCAACGACACGACCCC
GTCCAATCCGGACACCTGGAGAAATCGATCCGAACGTCCGCCCGCCGTAT
CGAGCGATACCGATGGTAGTAGTGGCGCGGTGACGGCGGCGGCGGCGGCG
GCGGCAGCGGCAGCGGCGTATTCGGCGCTGTGTCCGGCGCTCCACGGTGC
AGACTATGGTTGGTCCTTTCCGGCGGGTGCAGAACCACCCCCCACACAGC
AGCAGCAGGAAGGACGAGAGCGGGAGCGGGAGCGGATCCCCCCGGTGGGC
AGAAGACGCGGCGCTACCGAGGCAGAGAGGAAAGCGCCAGGAAGAGGAAT
GGCTCTGGCGGCCGACGCCACCGGCGTTGCTGCCGCCGCTGATTCCCCCG
CCGGTGCGCATGCCGCCACCGCGGTGTTGACCGTGGAAGGAGACGGGCCA
GAGGAACTGTCCGGCCGCAGGGCAGCGGCGCCTGGGGCGGCGCCGCCGCA
GCCGCTGCCTCCCGGCCGCGCTGGTGCGGCGACTGGCGCGTTCGGCGGGG
TTCGTTTCGACGCCGCGGCAAGCGCGGAGCGCAGCAGCAGCGGTGGTGAT
TTGACGGCCGGTGCCGGTAGGGTCGACCCAGACGAAGTCAGGAGGGCTAC
GGTCAACACCGGCGGCGGCCGCAGCGGCGGTAGCGGTAGCGGCGGCGGTG
GTACCGGTGGCGGTGGTAGCGGCGGCCGTAAGAGGGCGGCAAGAAAGAGG
CCGAGGGGCGGTGGCGTGGCTACCTTTGAATCAGCGGAAGATAAAGCTCT
GAGGCAGATGTTGCTGGAGGCGACCAAGAGCGGGAGAGGGGGTGTCGCGC
TACGGGCGCTGCGGCTCATGGTGGAGGAAAACCTTTTGGTGAGCCAAAAG
CAGTACGTCGGCGCGATGGAGGCGTGCATGCGACAGGTGGAGGAAAACCT
TTTGGTGAGCCAAAAGCAGTACGTCGGCGCGATGGAGGCGTGCATGCGAC
AGGGCTCTTGGACGTCCGGCCTTGAGGTGTTCCGGCTTCTCCTCGAGGAC
CTTCGGCCGAGGGGGCTCAGCCCCAAGCAGTCCACCTGGAGGTCACTTGC
GAGGTAAGGCTCTTGGACGTCCGGCCTTGAGGTGTTCCGGCTTCTCCTCG
AGGACCTTCGGCCGAGGGGGCTCAGCCCCAAGCAGTCCACCTGGAGGTCA
CTTGCGAGGTAA
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