mRNA_E-fasciculatus_F_contig15272.3717.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15272.3717.1
Unique NamemRNA_E-fasciculatus_F_contig15272.3717.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: D7FQS4_ECTSI (Peroxisomal membrane protein 70 abcd3, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS4_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 1.440e-149
Identity = 302/405 (74.57%), Postives = 316/405 (78.02%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQEQGQLSNSPGTAIPGAAAXXXXXXXDGTSVGSVTADADVXXXXXXXXXXXXXXX---ASRITPPRRNPPGVAGVSLATEEEENSPSWVAADVVGREGKVSGEPGLISNDDGDVSPAMAPSLDTARSTCRPAATSAAPADDHPAMMAGTEAAAAVVGVARGQPELAPEAAGAARVSGAAAAAAVGVSGGGCSGG---RFAPPRLQRSGSVVVQEDSVIEFVDVPLVTPTGEVLIEALSFKV 1197
            +RKPTAMYTALVAQQEGEYRYVNSRLLTNAQ EIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ    + NSPG AI     XXXXXXX              XXXXXXXXXXXXXXX   A+RITPPRRNP GV+GV+LATEE+ NSPSW AAD  GREG  SGEPG I N+DGDVS  +     +     RP++ S APAD HPAMMAGT+A+A  VGVA GQPEL PEA                            R   P LQRSGSVVVQEDSVIEFVDVPLVTPTGEVL+EALSFKV
Sbjct:  124 LRKPTAMYTALVAQQEGEYRYVNSRLLTNAQ-EIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ----VPNSPGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARITPPRRNP-GVSGVNLATEEDGNSPSW-AADEGGREG-ASGEPGRIGNEDGDVSGTIPRLTSSLSEPARPSSISRAPADGHPAMMAGTKASA--VGVALGQPELEPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGAPPLQRSGSVVVQEDSVIEFVDVPLVTPTGEVLVEALSFKV 518
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: A0A6H5JZ08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ08_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 6.700e-80
Identity = 200/283 (70.67%), Postives = 212/283 (74.91%), Query Frame = 1 
Query:  352 MMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQEQGQLSNSPGTAIPGA-AAXXXXXXXDGTSVGSVTADADVXXXXXXXXXXXXXXXASRITPPRRNPPGVAGVSLATEEEENSPSWVAADVVGREGKVSGEPGLISNDDGDVSPAMAPSLDTARSTCRPAATSAAPADDHPAMMAGTEAAAAVVGVARGQPELAPEAAGAARVSGAAAAAAVGVSGGGCSGGRFAPPRLQRSGSVVVQEDSVIEFVDVPLVTPTGEVLIEALSFKV 1197
            MMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ    + NSPG AIPGA AA XXXXXX              XXXXXXXXXXXXXXXA+RITPPRRNP GV+GV+ ATEE+ NSPSW AAD   REG  SGEPG IS +DGDVS A+     +     RP++ S APAD HPAMMAGT+ AAAV GVA GQPELAPEAAGAAR S                G R APP LQRSGSVVVQE SVIEFVDVPLVTPTGEVL+EALSFKV
Sbjct:    1 MMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ----VPNSPGAAIPGAEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARITPPRRNP-GVSGVNFATEEDGNSPSW-AADAEEREG-ASGEPGRISKEDGDVSGAIPRLTSSLSEPARPSSISCAPADGHPAMMAGTKEAAAV-GVALGQPELAPEAAGAARASEXXXXXXXXXX---XDGRRGAPP-LQRSGSVVVQEVSVIEFVDVPLVTPTGEVLVEALSFKV 271
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: A0A835Z212_9STRA (ATP-binding cassette sub-family D member 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z212_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.280e-53
Identity = 99/165 (60.00%), Postives = 127/165 (76.97%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ 495
            +RKPT +YTALV  QEG YR+VN RL+T+A+ EIAFY GN KEK VL   F  LV++ RRS++FR+S+  +DS+ AKY AS+VGW  VSRPF+N   PR   ++ + +YQ+YHS+GRMML L+ ALGRLVLSGREL RLSGFS+RVT L+DVI+D  +G + R Q
Sbjct:  174 MRKPTGLYTALVQHQEGVYRHVNGRLITHAE-EIAFYGGNKKEKAVLSAAFADLVALVRRSQQFRYSMAVVDSIAAKYLASVVGWLTVSRPFLNLKDPRFKDASPSVLYQEYHSAGRMMLNLSQALGRLVLSGRELTRLSGFSARVTSLLDVIEDVAQGSYHRTQ 337
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: UPI00148BB02A (ATP-binding cassette sub-family D member 3a isoform X3 n=1 Tax=Hippoglossus hippoglossus TaxID=8267 RepID=UPI00148BB02A)

HSP 1 Score: 182 bits (461), Expect = 4.730e-49
Identity = 88/163 (53.99%), Postives = 122/163 (74.85%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKR 489
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GNT+EKQ +   F KLV        FR S+G +DS++AKY A++VG+ VVSRPF+N  HPRH HST +E+ +DY+ SGRM+L+L+ ALGR+VL+GRE++RLSGF+SR+T L+ V+ + N G ++R
Sbjct:  247 LRRPIGKMTVTEQRYEGEYRYVNSRLITNSE-EIAFYNGNTREKQTIHATFKKLVDHLHNFIFFRFSMGFIDSMIAKYLATVVGYLVVSRPFLNLSHPRHLHSTQSELLEDYYQSGRMLLRLSQALGRIVLAGREMSRLSGFTSRITELMKVLKELNAGKYER 408
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: A0A5E4C8B9_MARMO (ABC transmembrane type-1 domain-containing protein n=2 Tax=Marmota monax TaxID=9995 RepID=A0A5E4C8B9_MARMO)

HSP 1 Score: 181 bits (459), Expect = 5.030e-49
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRG----QEQGQLSNSPGTAIPGA 543
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GN +EKQ +  VF KLV        FR S+G +DS++AKYFA++VG+ VVSRPF++  HPRH  ST +E+ +DY+ SGRM+L+++ ALGR+VL+GRE+ RL+GF++R+T L+ V+ D N G ++R     QE+G       T IPGA
Sbjct:  247 LRRPIGKMTITEQKYEGEYRYVNSRLITNSE-EIAFYDGNKREKQTIYSVFRKLVEHLHNFILFRFSMGFIDSIIAKYFATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVLQQEKGTEGVQVSTLIPGA 430
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: UPI000719AB79 (ATP-binding cassette sub-family D member 3-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AB79)

HSP 1 Score: 184 bits (466), Expect = 2.080e-48
Identity = 94/184 (51.09%), Postives = 135/184 (73.37%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRGQ---EQGQLSNSPGTAIPGA 543
            +R+P A  T +  + EGE+RYVNSRL+TN++ EIAFY+GN +EK  + G F +LV+  R S  FR  +G  D+++AKY A+LVG+TVVSRPF+N  HPRH  ST +E  +DY+ SGRM++KLA A+GRLVL+GRE+ RL+GF++RVT L+ V++D N+G ++R      QG++ +S    IPG+
Sbjct:  253 LRRPIAHMTMMEQRYEGEFRYVNSRLITNSE-EIAFYQGNEREKCTILGAFQQLVNHLRTSLEFRSLMGIGDNIIAKYVATLVGYTVVSRPFLNLQHPRHMSSTPSERLEDYYQSGRMLVKLAEAIGRLVLAGREMTRLAGFTARVTELMRVLNDLNKGRYQRSMLSDNQGRIGSSKLNVIPGS 435
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: UPI0011E9C242 (ATP-binding cassette sub-family D member 3 isoform X2 n=2 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011E9C242)

HSP 1 Score: 183 bits (465), Expect = 2.670e-48
Identity = 87/163 (53.37%), Postives = 124/163 (76.07%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKR 489
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GNT+EKQ +  +F KLV+       FR S+G +DS++AKY A++VG+ VVSRPF+N  HPRH HST +E+ +DY+ SGRM+L+++ ALGR+VL+GRE++RLSGF++R+T LI V+ + N G ++R
Sbjct:  246 LRRPVGKMTVTEQRYEGEYRYVNSRLITNSE-EIAFYNGNTREKQTIHSIFQKLVNHLHDFIFFRFSMGVVDSIIAKYLATVVGYLVVSRPFLNLSHPRHMHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMSRLSGFTARITELIKVLKELNAGKYER 407
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: A0A3Q4HA51_NEOBR (ATP-binding cassette sub-family D member 3-like n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HA51_NEOBR)

HSP 1 Score: 181 bits (458), Expect = 3.350e-48
Identity = 91/180 (50.56%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRG----QEQGQLSNSPGT 528
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GN +EKQ +  VF KLV        FR S+G +DS++AKY A++VG+ VVSRPF+N  HPRH HST +E+ +DY+ SGRM+L+++ ALGR+VL+GRE++RLSGF++R+  L+ V+ D N G ++R     QE+ +L   PG+
Sbjct:  139 LRRPVGKMTVAEQRYEGEYRYVNSRLITNSE-EIAFYNGNKREKQTIHSVFQKLVDHLHDFIFFRFSMGVVDSIIAKYLATVVGYLVVSRPFLNLSHPRHTHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMSRLSGFTARIVELMKVLKDLNAGKYERTMVSQQEKEKLVLVPGS 317
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: L8YAH0_TUPCH (ATP-binding cassette sub-family D member 3 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L8YAH0_TUPCH)

HSP 1 Score: 176 bits (445), Expect = 4.260e-48
Identity = 91/185 (49.19%), Postives = 128/185 (69.19%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKRG----QEQGQLSNSPGTAIPGA 543
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GN +EKQ +  VF KLV        FR S+G +DS++AKY A++VG+ VVSRPF++  HPRH  ST +E+ +DY+ SGRM+L+++ ALGR+VL+GRE+ RL+GF++R+T L+ V+ D N G ++R     QE+G         IPGA
Sbjct:  132 LRRPIGKMTITEQKYEGEYRYVNSRLITNSE-EIAFYNGNKREKQTIHSVFRKLVEHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQERGIEGVQVMPLIPGA 315
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Match: A0A6J2USA4_CHACN (ATP-binding cassette sub-family D member 3-like isoform X1 n=3 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2USA4_CHACN)

HSP 1 Score: 182 bits (461), Expect = 1.010e-47
Identity = 88/163 (53.99%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    1 VRKPTAMYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAAEVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDANRGVFKR 489
            +R+P    T    + EGEYRYVNSRL+TN++ EIAFY GNT+EKQ +   F KLV        FR S+G +DS++AKY A++VG+ VVSRPF+N  HPRH HST AE+ +DY+ SGRM+L+++ ALGR+VL+GRE+ RLSGF++R+T L+ V+ D N G ++R
Sbjct:  249 LRRPIGKMTVSEQRYEGEYRYVNSRLITNSE-EIAFYNGNTREKQTINSTFKKLVDHLHNFIFFRFSMGFVDSIIAKYLATVVGYLVVSRPFLNLSHPRHLHSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMKVLKDLNTGKYER 410
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15272.3717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS4_ECTSI1.440e-14974.57Peroxisomal membrane protein 70 abcd3, putative n=... [more]
A0A6H5JZ08_9PHAE6.700e-8070.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z212_9STRA1.280e-5360.00ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
UPI00148BB02A4.730e-4953.99ATP-binding cassette sub-family D member 3a isofor... [more]
A0A5E4C8B9_MARMO5.030e-4950.27ABC transmembrane type-1 domain-containing protein... [more]
UPI000719AB792.080e-4851.09ATP-binding cassette sub-family D member 3-like n=... [more]
UPI0011E9C2422.670e-4853.37ATP-binding cassette sub-family D member 3 isoform... [more]
A0A3Q4HA51_NEOBR3.350e-4850.56ATP-binding cassette sub-family D member 3-like n=... [more]
L8YAH0_TUPCH4.260e-4849.19ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A6J2USA4_CHACN1.010e-4753.99ATP-binding cassette sub-family D member 3-like is... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15272contigE-fasciculatus_F_contig15272:1040..2974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score442.2
Seed ortholog evalue2.5e-121
Seed eggNOG ortholog2880.D7FQS4
Preferred nameABCD3
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter type 1, transmembrane domain
Ec32 orthologEc-01_000320.1
Exons3
Model size1197
Cds size1179
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15272.3717.1prot_E-fasciculatus_F_contig15272.3717.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15272 1040..2956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.8200593-CDS-E-fasciculatus_F_contig15272:1039..19051622928007.8200593-CDS-E-fasciculatus_F_contig15272:1039..1905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 1040..1905 -
1695995786.4289007-CDS-E-fasciculatus_F_contig15272:1039..19051695995786.4289007-CDS-E-fasciculatus_F_contig15272:1039..1905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 1040..1905 -
1622928007.84069-CDS-E-fasciculatus_F_contig15272:2410..26471622928007.84069-CDS-E-fasciculatus_F_contig15272:2410..2647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 2411..2647 -
1695995786.443931-CDS-E-fasciculatus_F_contig15272:2410..26471695995786.443931-CDS-E-fasciculatus_F_contig15272:2410..2647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 2411..2647 -
1622928007.8578944-CDS-E-fasciculatus_F_contig15272:2880..29561622928007.8578944-CDS-E-fasciculatus_F_contig15272:2880..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 2881..2956 -
1695995786.453496-CDS-E-fasciculatus_F_contig15272:2880..29561695995786.453496-CDS-E-fasciculatus_F_contig15272:2880..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15272 2881..2956 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.8733613-UTR-E-fasciculatus_F_contig15272:2956..29741622928007.8733613-UTR-E-fasciculatus_F_contig15272:2956..2974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15272 2957..2974 -
1695995786.4628253-UTR-E-fasciculatus_F_contig15272:2956..29741695995786.4628253-UTR-E-fasciculatus_F_contig15272:2956..2974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15272 2957..2974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15272.3717.1

>prot_E-fasciculatus_F_contig15272.3717.1 ID=prot_E-fasciculatus_F_contig15272.3717.1|Name=mRNA_E-fasciculatus_F_contig15272.3717.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=393bp
MYTALVAQQEGEYRYVNSRLLTNAQAEIAFYKGNTKEKQVLEGVFDKLVS
VTRRSERFRHSLGALDSVVAKYFASLVGWTVVSRPFVNRDHPRHAHSTAA
EVYQDYHSSGRMMLKLAAALGRLVLSGRELARLSGFSSRVTGLIDVIDDA
NRGVFKRGQEQGQLSNSPGTAIPGAAAGAAAAGADGTSVGSVTADADVAA
AAEMSAAAPAAPAASRITPPRRNPPGVAGVSLATEEEENSPSWVAADVVG
REGKVSGEPGLISNDDGDVSPAMAPSLDTARSTCRPAATSAAPADDHPAM
MAGTEAAAAVVGVARGQPELAPEAAGAARVSGAAAAAAVGVSGGGCSGGR
FAPPRLQRSGSVVVQEDSVIEFVDVPLVTPTGEVLIEALSFKV
back to top

mRNA from alignment at E-fasciculatus_F_contig15272:1040..2974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15272.3717.1 ID=mRNA_E-fasciculatus_F_contig15272.3717.1|Name=mRNA_E-fasciculatus_F_contig15272.3717.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1935bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15272:1040..2974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAGAAAACCGACTGCGATGTACACTGCACTGGTGGCGCAGCAGGAGGG
GGAGTACCGCTACGTTAATAGTCGACTGCTCACCAACGCGCAAGGTGCGT
GCGGAGAATGTTATCCGATTCGCGAGCCCCCTTAAGGCGCCTTTAAACCC
CCGGGGTAGCGCAACTCTTGCTTAGCAAGCCGATTTCATGCGAAGCTGCC
GAAGTTCGCGCGCTGGTGTGTTGACCTACACGACCGTCTGCGCTTCATGC
ATAATGGCACCCCTCATCGGCCCCGGCTTTTTTTTTTTCTGAATCGTCGC
ACGTCAATTCACCCAACCCTCTCCGAGCAGAGATCGCGTTCTACAAGGGC
AACACAAAGGAGAAACAGGTGCTGGAGGGGGTGTTCGATAAGCTGGTGTC
CGTCACGAGGCGGTCGGAGAGGTTCCGTCACTCTCTCGGGGCGCTTGACT
CGGTGGTGGCAAAGTACTTCGCTAGCCTCGTGGGCTGGACGGTGGTGTCC
CGTCCCTTCGTCAACAGGGACCACCCGAGACACGCACACAGCACCGCGGC
CGAGGTCTACCAAGGTTCGTGAGTGTCATGGAGCACGTGGTAGTGACGCT
CGTATCTCTAAACCACAACACATGATACGCTCAAGACAATGAAGGAGATA
TAATATGCACAATATTTGGGCTCTCTAACCACAGCACATGATGACATGTT
CAAGACAATGAAGGAAGCAAACTTGCTCGATATTTGGATTTTGCGGGAAT
CGTCCTGTAATTTTTATTTCAAGTCGGAACACCGGGCCCCCCCGGTAAAT
TGGTTTGTATTTTTATTTCGATTCTCTACAGAGAAGCCGCTGAACAGATG
CTTGCGGCACTCTTGTAAAGGAAAACGCCTCTGCGCGGTATGCACACGCT
TTTTGACACGGGTGCAAGACAACCCGCCTTTTGTCAGCTTCACCATCGTG
ACCATGCGTGCATGTTCTTTTTCGGTGTATTGACTAATCTAACTGCGCCC
CGCACCTCCCTTTCTGGCGCGCCCAAATCCTCCAATCTATTCGTCTTGTG
TCGCCCGCTGCACCACAAGACTACCACTCGAGCGGCAGGATGATGCTCAA
ACTGGCGGCAGCCCTCGGCCGCCTGGTGCTCTCCGGCCGAGAGCTAGCCC
GCCTGTCGGGCTTCAGCTCTAGGGTCACGGGCCTCATCGACGTGATCGAC
GACGCCAACAGAGGCGTTTTTAAGAGGGGACAGGAACAGGGACAGCTGTC
GAACAGCCCCGGTACCGCTATCCCCGGAGCGGCGGCGGGAGCCGCCGCAG
CGGGCGCTGACGGTACCTCGGTAGGGTCGGTAACGGCGGACGCAGACGTT
GCCGCAGCAGCAGAGATGTCGGCGGCGGCGCCTGCGGCGCCGGCTGCGTC
GAGAATAACGCCTCCTCGACGAAACCCCCCCGGGGTGGCGGGGGTTAGCC
TCGCCACGGAGGAGGAAGAGAATTCGCCGAGTTGGGTGGCAGCGGATGTG
GTGGGACGAGAAGGGAAAGTGTCCGGGGAACCCGGGCTTATCAGCAACGA
TGACGGCGACGTTTCTCCGGCGATGGCGCCATCATTGGACACAGCTAGAA
GTACATGTAGGCCTGCGGCGACCTCGGCCGCACCCGCAGATGACCATCCC
GCGATGATGGCCGGAACGGAGGCGGCGGCGGCAGTGGTAGGAGTAGCCCG
AGGGCAGCCCGAGCTCGCGCCCGAAGCTGCTGGGGCCGCGAGGGTCTCGG
GCGCGGCGGCGGCGGCGGCGGTGGGGGTGAGCGGTGGGGGTTGCAGCGGC
GGGCGGTTCGCGCCGCCGCGGCTGCAGCGATCGGGGTCGGTAGTGGTGCA
GGAGGACAGCGTGATCGAGTTTGTGGACGTGCCTCTCGTCACCCCCACCG
GGGAGGTGCTGATCGAAGCCCTTTCTTTCAAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15272:1040..2974-

>mRNA_E-fasciculatus_F_contig15272.3717.1 ID=mRNA_E-fasciculatus_F_contig15272.3717.1|Name=mRNA_E-fasciculatus_F_contig15272.3717.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15272:1040..2974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACACTGCACTGGTGGCGCAGCAGGAGGGGGAGTACCGCTACGTTAA
TAGTCGACTGCTCACCAACGCGCAAGATGTACACTGCACTGGTGGCGCAG
CAGGAGGGGGAGTACCGCTACGTTAATAGTCGACTGCTCACCAACGCGCA
AGCAGAGATCGCGTTCTACAAGGGCAACACAAAGGAGAAACAGGTGCTGG
AGGGGGTGTTCGATAAGCTGGTGTCCGTCACGAGGCGGTCGGAGAGGTTC
CGTCACTCTCTCGGGGCGCTTGACTCGGTGGTGGCAAAGTACTTCGCTAG
CCTCGTGGGCTGGACGGTGGTGTCCCGTCCCTTCGTCAACAGGGACCACC
CGAGACACGCACACAGCACCGCGGCCGAGGTCTACCAAGCAGAGATCGCG
TTCTACAAGGGCAACACAAAGGAGAAACAGGTGCTGGAGGGGGTGTTCGA
TAAGCTGGTGTCCGTCACGAGGCGGTCGGAGAGGTTCCGTCACTCTCTCG
GGGCGCTTGACTCGGTGGTGGCAAAGTACTTCGCTAGCCTCGTGGGCTGG
ACGGTGGTGTCCCGTCCCTTCGTCAACAGGGACCACCCGAGACACGCACA
CAGCACCGCGGCCGAGGTCTACCAAGACTACCACTCGAGCGGCAGGATGA
TGCTCAAACTGGCGGCAGCCCTCGGCCGCCTGGTGCTCTCCGGCCGAGAG
CTAGCCCGCCTGTCGGGCTTCAGCTCTAGGGTCACGGGCCTCATCGACGT
GATCGACGACGCCAACAGAGGCGTTTTTAAGAGGGGACAGGAACAGGGAC
AGCTGTCGAACAGCCCCGGTACCGCTATCCCCGGAGCGGCGGCGGGAGCC
GCCGCAGCGGGCGCTGACGGTACCTCGGTAGGGTCGGTAACGGCGGACGC
AGACGTTGCCGCAGCAGCAGAGATGTCGGCGGCGGCGCCTGCGGCGCCGG
CTGCGTCGAGAATAACGCCTCCTCGACGAAACCCCCCCGGGGTGGCGGGG
GTTAGCCTCGCCACGGAGGAGGAAGAGAATTCGCCGAGTTGGGTGGCAGC
GGATGTGGTGGGACGAGAAGGGAAAGTGTCCGGGGAACCCGGGCTTATCA
GCAACGATGACGGCGACGTTTCTCCGGCGATGGCGCCATCATTGGACACA
GCTAGAAGTACATGTAGGCCTGCGGCGACCTCGGCCGCACCCGCAGATGA
CCATCCCGCGATGATGGCCGGAACGGAGGCGGCGGCGGCAGTGGTAGGAG
TAGCCCGAGGGCAGCCCGAGCTCGCGCCCGAAGCTGCTGGGGCCGCGAGG
GTCTCGGGCGCGGCGGCGGCGGCGGCGGTGGGGGTGAGCGGTGGGGGTTG
CAGCGGCGGGCGGTTCGCGCCGCCGCGGCTGCAGCGATCGGGGTCGGTAG
TGGTGCAGGAGGACAGCGTGATCGAGTTTGTGGACGTGCCTCTCGTCACC
CCCACCGGGGAGGTGCTGATCGAAGCCCTTTCTTTCAAGGTGACTACCAC
TCGAGCGGCAGGATGATGCTCAAACTGGCGGCAGCCCTCGGCCGCCTGGT
GCTCTCCGGCCGAGAGCTAGCCCGCCTGTCGGGCTTCAGCTCTAGGGTCA
CGGGCCTCATCGACGTGATCGACGACGCCAACAGAGGCGTTTTTAAGAGG
GGACAGGAACAGGGACAGCTGTCGAACAGCCCCGGTACCGCTATCCCCGG
AGCGGCGGCGGGAGCCGCCGCAGCGGGCGCTGACGGTACCTCGGTAGGGT
CGGTAACGGCGGACGCAGACGTTGCCGCAGCAGCAGAGATGTCGGCGGCG
GCGCCTGCGGCGCCGGCTGCGTCGAGAATAACGCCTCCTCGACGAAACCC
CCCCGGGGTGGCGGGGGTTAGCCTCGCCACGGAGGAGGAAGAGAATTCGC
CGAGTTGGGTGGCAGCGGATGTGGTGGGACGAGAAGGGAAAGTGTCCGGG
GAACCCGGGCTTATCAGCAACGATGACGGCGACGTTTCTCCGGCGATGGC
GCCATCATTGGACACAGCTAGAAGTACATGTAGGCCTGCGGCGACCTCGG
CCGCACCCGCAGATGACCATCCCGCGATGATGGCCGGAACGGAGGCGGCG
GCGGCAGTGGTAGGAGTAGCCCGAGGGCAGCCCGAGCTCGCGCCCGAAGC
TGCTGGGGCCGCGAGGGTCTCGGGCGCGGCGGCGGCGGCGGCGGTGGGGG
TGAGCGGTGGGGGTTGCAGCGGCGGGCGGTTCGCGCCGCCGCGGCTGCAG
CGATCGGGGTCGGTAGTGGTGCAGGAGGACAGCGTGATCGAGTTTGTGGA
CGTGCCTCTCGTCACCCCCACCGGGGAGGTGCTGATCGAAGCCCTTTCTT
TCAAGGTG
back to top