|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig15271.3716.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI) HSP 1 Score: 494 bits (1272), Expect = 3.040e-163 Identity = 310/344 (90.12%), Postives = 318/344 (92.44%), Query Frame = 1
Query: 1 EQAKHMYAVGGRADKNSSSPDGGRGMGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAASAGAPTGGFLRGIEMALSLELPRPSXXXXXXXXXXAEKSARAASDAVVSLLGQAGGGGARRAGVLSDAVDGLVSAFGLKPAVRVAVIGTAGAAAELQAAESEQPRRRPPAYLVRHPTVMDILLEALFHPAHRCPSEDLRAGCCAILAYASCVEVPSLDTNNDGGXXXXXXXXXXXXGAGEAVEVIDLVELAETSHALLQAAGECFETSQLASLQGQLRPFAEHPLVSLGILKWVHAQASTESFVSTPSFLSYAPVFLKLCGQAADEHPPQRPEAFEV 1032
E AKHMYAVGGRAD NSSSPDGGRGMGAF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAASAGAPTGGFLRG+EMALSLELPRPSXXXXXXXXXXAEKSARAA+DAVVSLLGQAGGGGARRAGVL DAVDGLVSAFGLKPAVRVAVIG A A ELQAAESEQP+RRPPAYLVRHPT+MDILLEALFHPAHRCPSEDLRAGCCAILAYASCVEVP LDTNNDG GEA+EVIDLVELAETSHALLQAAGECFETSQLASLQG+LRPFAEHPLVSLG+LKWVHAQASTESFVSTPSFLSYAPVFLKLCGQAADEHPPQRPEAFE+
Sbjct: 644 ELAKHMYAVGGRADNNSSSPDGGRGMGAFSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAASAGAPTGGFLRGVEMALSLELPRPSXXXXXXXXXXAEKSARAAADAVVSLLGQAGGGGARRAGVLLDAVDGLVSAFGLKPAVRVAVIGAAAVAVELQAAESEQPKRRPPAYLVRHPTLMDILLEALFHPAHRCPSEDLRAGCCAILAYASCVEVPPLDTNNDGSSSNGGSL------GGEAIEVIDLVELAETSHALLQAAGECFETSQLASLQGRLRPFAEHPLVSLGVLKWVHAQASTESFVSTPSFLSYAPVFLKLCGQAADEHPPQRPEAFEI 981
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 490.0 |
| Seed ortholog evalue | 9.2e-136 |
| Seed eggNOG ortholog | 2880.D8LQE4 |
| Preferred name | WAC |
| KEGG ko | ko:K15181 |
| GOs | GO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141 |
| EggNOG free text desc. | mRNA splicing, via spliceosome |
| EggNOG OGs | COG5104@1,KOG0152@2759 |
| COG Functional cat. | A |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03021 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | TH1 protein |
| Ec32 ortholog | Ec-10_005330.1 |
| Exons | 5 |
| Model size | 1032 |
| Cds size | 1017 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15271.3716.1 >prot_E-fasciculatus_F_contig15271.3716.1 ID=prot_E-fasciculatus_F_contig15271.3716.1|Name=mRNA_E-fasciculatus_F_contig15271.3716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=339bp
MYAVGGRADKNSSSPDGGRGMGAFSLSRSISGGAGMGGGGSGRNGLGRGA
GGGGGADEDGAASAGAPTGGFLRGIEMALSLELPRPSAGAAAAVAVAAEK
SARAASDAVVSLLGQAGGGGARRAGVLSDAVDGLVSAFGLKPAVRVAVIG
TAGAAAELQAAESEQPRRRPPAYLVRHPTVMDILLEALFHPAHRCPSEDL
RAGCCAILAYASCVEVPSLDTNNDGGGGSSSSSSSSSGGAGEAVEVIDLV
ELAETSHALLQAAGECFETSQLASLQGQLRPFAEHPLVSLGILKWVHAQA
STESFVSTPSFLSYAPVFLKLCGQAADEHPPQRPEAFEV back to topmRNA from alignment at E-fasciculatus_F_contig15271:59..2889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15271.3716.1 ID=mRNA_E-fasciculatus_F_contig15271.3716.1|Name=mRNA_E-fasciculatus_F_contig15271.3716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2831bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15271:59..2889+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACAGGCCAAGCACATGTACGCCGTGGGCGGGAGGGCAGACAAGAACTC
CTCCTCACCCGACGGGGGTCGCGGCATGGGCGCCTTTAGCTTGAGCCGCA
GCATCAGCGGCGGGGCAGGCATGGGCGGCGGAGGCAGTGGTCGAAATGGT
GAGGTCCTGTTAGCGCTCTCGCCTTGTGCTCAGAACGTGTACAAGTACGG
CTGCTGCTATACGCATGTGTTGCCGTTTCTTATTGTATTTTGATGTTTGC
GTGTAAGGCGTTGTCGCGGCCCCGCTGGGGTACAATGAAATCTGGGGGGT
TACCTCTGTTGGACACACAGCAACTCCCGCGTTGCTTGTGTTACCTTCTT
GCGAGAAGAAGAGCACAACCGTGGTGCTCATCCTGCCTGGAGTTGCGGTG
GGAGATGTTCTTCGGCGTCAACTGCAGCCTGCTGTACAATCTCAGTTTCG
GTGATTTCTCTCGTGGTACACTCCCCCCCCTAAGATCCCAGGGGAGTCTA
CCGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCT
CAAGACGGCTTGTATCGGCTCTCGTGTACGTCCTTCATGCCTATAAACAA
GCGCGTCGAAACGAAATTCACAAACAAATAACGGTGGCGTGTTCCTACGA
CATCCACTTGCAAATCACAACACAACGCTGAACCACCCGCCGACCAGGGT
TAGGCAGAGGTGCCGGCGGCGGCGGTGGGGCAGACGAAGACGGCGCCGCC
TCAGCCGGAGCCCCCACCGGCGGCTTCCTCCGTGGTATAGAGATGGCCCT
CTCTCTAGAACTCCCGCGACCCTCCGCTGGGGCGGCGGCGGCGGTAGCGG
TGGCGGCTGAGAAGTCGGCAAGGGCTGCGTCGGATGCGGTGGTCTCGCTT
CTGGGGCAGGCCGGAGGTGGCGGCGCGCGGCGGGCGGGGGTGCTGTCGGA
TGCCGTGGACGGGCTGGTGTCGGCGTTTGGGCTCAAGCCTGCGGTGGTGA
GAAAGGAAAAGAGGGAGGGAGAGAGAAAGAAAGAGATAGAGACAGACCGA
CACACAGAGACAGCGAGTGGGGCACGGAGAGAGAGGGGGGGGGGGGCGGT
CCGTGATGTCCAATCGAGGCTTTGTGCGGATTCATGTCCCCCGAGGTTTT
GCATATGTTGGCGTTGGCGTGCCTCATGCCGCGGAGAGGTTGGTGTTGGT
GTTGGTGCCCTCCCTGGTTGTAATCCGGCCGCCGTGCGAAGCATGGTTGT
AATACTCAGGAGCTCAGGAACGTGTTTTTGTTTCCCCCCCGAAAAAGTGG
TAGTACATGTACAAAAAGAATATTTTCAGACGAGAATAGGCGGTCCTAGG
CTCTCTGTTGTTGTTGGTACTGCTGTCATCATCGTCGTTGTATTTTGCCA
TAGCTCCCGCGCACGACTCGATCCATTCCACCCGCCGCTACCTACCTTCC
AGCTAACGCCGCCAAACTCCTTGGCCATCGCCGCTCTGTCTCCTTCTTAT
CTGGTCGCCAACGCGTCAAAGAGGGTGGCCGTGATCGGCACAGCGGGGGC
GGCGGCGGAACTACAAGCTGCGGAGAGCGAGCAACCCAGACGGCGACCGC
CGGCGTATTTGGTGCGGCATCCCACGGTGATGGACATCCTCCTGGAGGCT
CTCTTCCACCCTGCACATCGATGTCCCTCAGAGGACCTCAGGGCGGGGTG
AGCTATCCAGCGAAACTATTTGTTGGCGCTAGGTGGATGACGTTCTTGCT
TTTTGTTGTTGCGTGGTCTCCGGCTGTCGCCGATATTGATGCTGTGGTAT
GTGTTTGGCTGTGGAAGAGTCTTGATGCCAGCTCTTGCGAGGGGAACACT
GGTGAGCCCATCCAGGTTTGTTTCTCCTGCGTTGCAACAGAACGTTTTGA
GCCGTACCATGAGATAACGGCCACCCACGTGGAGTTGGAGCTACACCCTC
TTTTGAACGGGGTAAGGATTGCTGGCATGGAAAGCACGTGTTGATGCCAT
GTTTTAGTTGTGGGCTCGTTGCGGAAGTTTCATCCTCTCGAGCCGCCCCT
CTTCTTCTTCCTCTTCTTCTTGCTTTTACAGGTGTTGTGCCATTCTCGCT
TACGCGAGTTGTGTAGAGGTGCCCTCGCTGGACACCAACAACGATGGCGG
CGGCGGCAGCAGCAGCAGTAGCAGCAGTAGCAGCGGTGGTGCCGGGGAGG
CGGTAGAGGTGATAGACCTCGTGGAGCTCGCGGAGACGTCGCACGCGCTC
CTGCAGGTGCGTGAGGGTGGTTTATGTGTCGATGCACGTTCATGAGGTCT
GCGGTTGAAAGAACACGACAACTACTCTACAATTATGGCACAAAAGGGGG
ATTCAGTCCATGTATGCGTTGTCGTTAATAAACCCACGTCTCCCCCTGTA
AAGCATGGCAGGCACAAAAACTGATCGAATCGTCAAAGCAGGAATCGTCT
CTGTTGAAACCGATAATGGCGCGCCGTCTCGAGGGGGGTGCGTGGTTGAC
GGGCTCACTGGCACAGGCAGTAGATGAGTATACCCCCGCGTGTTCAACCC
TCGCTCTCGACTCTAATTTTTCTCTGTTTGATTTTGTTCGGTTCAAGGCG
GCCGGAGAGTGTTTCGAGACGTCGCAGCTCGCCTCCCTTCAGGGGCAGCT
TAGACCGTTCGCGGAGCACCCGCTGGTCAGCCTTGGGATCCTCAAGTGGG
TCCACGCGCAGGCGTCCACGGAGTCGTTCGTGTCCACGCCCTCCTTCTTG
TCGTACGCGCCCGTGTTCCTGAAGCTTTGCGGGCAGGCGGCGGACGAGCA
TCCCCCGCAGCGCCCGGAGGCCTTCGAGGTA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15271:59..2889+ >mRNA_E-fasciculatus_F_contig15271.3716.1 ID=mRNA_E-fasciculatus_F_contig15271.3716.1|Name=mRNA_E-fasciculatus_F_contig15271.3716.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15271:59..2889+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGCCGTGGGCGGGAGGGCAGACAAGAACTCCTCCTCACCCGACGG
GGGTCGCGGCATGGGCGCCTTTAGCTTGAGCCGCAGCATCAGCGGCGGGG
CAGGCATGGGCGGCGGAGGCAGTGGTCGAAATGATGTACGCCGTGGGCGG
GAGGGCAGACAAGAACTCCTCCTCACCCGACGGGGGTCGCGGCATGGGCG
CCTTTAGCTTGAGCCGCAGCATCAGCGGCGGGGCAGGCATGGGCGGCGGA
GGCAGTGGTCGAAATGGGTTAGGCAGAGGTGCCGGCGGCGGCGGTGGGGC
AGACGAAGACGGCGCCGCCTCAGCCGGAGCCCCCACCGGCGGCTTCCTCC
GTGGTATAGAGATGGCCCTCTCTCTAGAACTCCCGCGACCCTCCGCTGGG
GCGGCGGCGGCGGTAGCGGTGGCGGCTGAGAAGTCGGCAAGGGCTGCGTC
GGATGCGGTGGTCTCGCTTCTGGGGCAGGCCGGAGGTGGCGGCGCGCGGC
GGGCGGGGGTGCTGTCGGATGCCGTGGACGGGCTGGTGTCGGCGTTTGGG
CTCAAGCCTGCGGTGGGTTAGGCAGAGGTGCCGGCGGCGGCGGTGGGGCA
GACGAAGACGGCGCCGCCTCAGCCGGAGCCCCCACCGGCGGCTTCCTCCG
TGGTATAGAGATGGCCCTCTCTCTAGAACTCCCGCGACCCTCCGCTGGGG
CGGCGGCGGCGGTAGCGGTGGCGGCTGAGAAGTCGGCAAGGGCTGCGTCG
GATGCGGTGGTCTCGCTTCTGGGGCAGGCCGGAGGTGGCGGCGCGCGGCG
GGCGGGGGTGCTGTCGGATGCCGTGGACGGGCTGGTGTCGGCGTTTGGGC
TCAAGCCTGCGGTGAGGGTGGCCGTGATCGGCACAGCGGGGGCGGCGGCG
GAACTACAAGCTGCGGAGAGCGAGCAACCCAGACGGCGACCGCCGGCGTA
TTTGGTGCGGCATCCCACGGTGATGGACATCCTCCTGGAGGCTCTCTTCC
ACCCTGCACATCGATGTCCCTCAGAGGACCTCAGGGCGGGAGGGTGGCCG
TGATCGGCACAGCGGGGGCGGCGGCGGAACTACAAGCTGCGGAGAGCGAG
CAACCCAGACGGCGACCGCCGGCGTATTTGGTGCGGCATCCCACGGTGAT
GGACATCCTCCTGGAGGCTCTCTTCCACCCTGCACATCGATGTCCCTCAG
AGGACCTCAGGGCGGGGTGTTGTGCCATTCTCGCTTACGCGAGTTGTGTA
GAGGTGCCCTCGCTGGACACCAACAACGATGGCGGCGGCGGCAGCAGCAG
CAGTAGCAGCAGTAGCAGCGGTGGTGCCGGGGAGGCGGTAGAGGTGATAG
ACCTCGTGGAGCTCGCGGAGACGTCGCACGCGCTCCTGCAGGTGTTGTGC
CATTCTCGCTTACGCGAGTTGTGTAGAGGTGCCCTCGCTGGACACCAACA
ACGATGGCGGCGGCGGCAGCAGCAGCAGTAGCAGCAGTAGCAGCGGTGGT
GCCGGGGAGGCGGTAGAGGTGATAGACCTCGTGGAGCTCGCGGAGACGTC
GCACGCGCTCCTGCAGGCGGCCGGAGAGTGTTTCGAGACGTCGCAGCTCG
CCTCCCTTCAGGGGCAGCTTAGACCGTTCGCGGAGCACCCGCTGGTCAGC
CTTGGGATCCTCAAGTGGGTCCACGCGCAGGCGTCCACGGAGTCGTTCGT
GTCCACGCCCTCCTTCTTGTCGTACGCGCCCGTGTTCCTGAAGCTTTGCG
GGCAGGCGGCGGACGAGCATCCCCCGCAGCGCCCGGAGGCCTTCGAGGTA
GCGGCCGGAGAGTGTTTCGAGACGTCGCAGCTCGCCTCCCTTCAGGGGCA
GCTTAGACCGTTCGCGGAGCACCCGCTGGTCAGCCTTGGGATCCTCAAGT
GGGTCCACGCGCAGGCGTCCACGGAGTCGTTCGTGTCCACGCCCTCCTTC
TTGTCGTACGCGCCCGTGTTCCTGAAGCTTTGCGGGCAGGCGGCGGACGA
GCATCCCCCGCAGCGCCCGGAGGCCTTCGAGGTA back to top
|