mRNA_E-fasciculatus_F_contig15235.3699.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15235.3699.1
Unique NamemRNA_E-fasciculatus_F_contig15235.3699.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15235.3699.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 3.090e-67
Identity = 194/223 (87.00%), Postives = 195/223 (87.44%), Query Frame = 2 
Query:    2 RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXXXXXXXXNGAEEVKGSSSPRGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---QREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAARGAXXXXXXXXXXXXEAAIETILM 661
            RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEE XXXXXXXXXXXXXXXXXXXX    G +E K         XXXXXXXXXXXXXX  XXXXXXXXX       QREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAA   XXXXXXXXXXXXEAAIETILM
Sbjct:  363 RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEXXXXXXXXXXXXXXXXXXXXX----GTDETKXXXXXXXXXXXXXXXXXXXXXXXGEXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILM 581
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BLAST of mRNA_E-fasciculatus_F_contig15235.3699.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 7.530e-53
Identity = 146/172 (84.88%), Postives = 147/172 (85.47%), Query Frame = 2 
Query:    2 RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXXXXXXXXNGAEEVKGSSSPRGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----QREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE 502
            RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXX      NG  E  G+SSPRGE        XXXXXXXXXXXXXXXXXXXX       QREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE
Sbjct:  363 RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXX------NGTYEATGTSSPRGEQVKEGRRNXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE 528
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BLAST of mRNA_E-fasciculatus_F_contig15235.3699.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.530e-26
Identity = 70/194 (36.08%), Postives = 95/194 (48.97%), Query Frame = 2 
Query:    2 RLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXXXXXXXXNGAEEVKGSSSPRGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVAT 583
            RL LLRP VR+HL+AM +QR +  MIRF + +L+R+GQLE QL+D C+                                   GSS+ +G+                              QR ++  E E    GLY MLL LC E++++LRPR+ H  D+D LCE++ V+REEIVEE RGRHG  Q   + T
Sbjct:  491 RLNLLRPPVRAHLDAMHRQRELVGMIRFSSVYLIRIGQLEVQLFDDCMSGSS-------------------------------GSSAQQGDGGSGDSAP----------------------QRGDDGGENE----GLYNMLLALCDEMYRYLRPRMLHANDIDELCEIIGVVREEIVEEHRGRHGERQARRIQT 627
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BLAST of mRNA_E-fasciculatus_F_contig15235.3699.1 vs. uniprot
Match: A0A7S2G5Q8_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5Q8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.940e-5
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  371 EEEAAEV-----EEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEI 529
            EEEA ++     +EG AGL+ ML++LC+ ++  +RP + H TD+DTLC+ V  +REE+
Sbjct:   38 EEEAEQLGKTVRDEGPAGLHVMLVELCNTMYGAMRPFLIHQTDLDTLCQTVGTLREEL 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15235.3699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G064_ECTSI3.090e-6787.00Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A6H5JKT8_9PHAE7.530e-5384.88Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A835YUG6_9STRA5.530e-2636.08Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S2G5Q8_9STRA2.940e-544.83Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15235contigE-fasciculatus_F_contig15235:481..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size666
Cds size663
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15235.3699.1prot_E-fasciculatus_F_contig15235.3699.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15235 481..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.3576968-CDS-E-fasciculatus_F_contig15235:480..5611622928005.3576968-CDS-E-fasciculatus_F_contig15235:480..561Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 481..561 +
1695995785.1610286-CDS-E-fasciculatus_F_contig15235:480..5611695995785.1610286-CDS-E-fasciculatus_F_contig15235:480..561Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 481..561 +
1622928005.3733945-CDS-E-fasciculatus_F_contig15235:1274..16951622928005.3733945-CDS-E-fasciculatus_F_contig15235:1274..1695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 1275..1695 +
1695995785.1711493-CDS-E-fasciculatus_F_contig15235:1274..16951695995785.1711493-CDS-E-fasciculatus_F_contig15235:1274..1695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 1275..1695 +
1622928005.3862464-CDS-E-fasciculatus_F_contig15235:2440..26011622928005.3862464-CDS-E-fasciculatus_F_contig15235:2440..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 2441..2601 +
1695995785.1801004-CDS-E-fasciculatus_F_contig15235:2440..26011695995785.1801004-CDS-E-fasciculatus_F_contig15235:2440..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15235 2441..2601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15235.3699.1

>prot_E-fasciculatus_F_contig15235.3699.1 ID=prot_E-fasciculatus_F_contig15235.3699.1|Name=mRNA_E-fasciculatus_F_contig15235.3699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp
ETGPASARCPLSPGGDVEAEGNHRHDKVRSGFPGAGRAAGDTALRRLPGP
RGGGGGARTGSGSGSEPTTKRTRQQQQRRRRGQREFVPARGSSRQGGAGE
PAGGGRGPRRRGRRSEEGAGPPAGGGSRRGGGGPGGALRDASAAVLRAAQ
APPAEGVPRHGHGHPLRACQRDSRGDRGRAARAPRIEPDKPGSDGGERGG
SRRRGGWWRGRGGCHRDHPHE
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mRNA from alignment at E-fasciculatus_F_contig15235:481..2602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15235.3699.1 ID=mRNA_E-fasciculatus_F_contig15235.3699.1|Name=mRNA_E-fasciculatus_F_contig15235.3699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15235:481..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACTGGCCCTGCTTCGGCCCGCTGTCCGCTCTCACCTGGAGGCGATGT
CGAAGCAGAGGGGAATCACCGCCATGATAAGGTATGTTGTACGTGCTGCC
CTTGTTGTTGTTGGTGGTGCTGCTGGTGATGTATTTTCCTGGATGTTGTT
TTGTTGTGGTCACGATGCTCCCGCTGCTGTTGATTTTTGAGTGGTTCTGT
CGTTCTCTGTCTCTCCGTTCTGCCTCTCTCTCTCTCTTCTTTCTTGATGT
TGAGGCGGGGAGGAAATGTGTCGCGTTTTGCACCTGACGTTCTCGAATGT
ATGCATATGTCCCACACCACACGAGAAGAAGGAGTCAATGATAACATTGA
TAACATCAGAATTCCGACCGGACAGCAGTATCTCTTGTGTGCGCTTGCGA
TGGCCGTATGAAGTACGTCCCAAAGTCTTGTGTTGTCTTACTATCTACGG
GGTGTCGTTGTTGTCGGCATCGTCGGCGAAATGAACGTCCAAGTCTTGAA
AGTTGTAAATGCCAAGAAATGGCATCCATGTCTTAAATAGTGAAGAGCAA
AGGTGTGATGTGACAGTTAATAGTAGACTTTTTTCTGCCCAGTTTTTCTC
GTATTTGTTTTGTTGTTTTGCTCACAGAACAAGACTAATTTTGTCTCTGT
ACTTTATCAACCGGACGAAAAAAGTCGACCTAACGTTTGGTGGCGTGCGT
GCTTGCGTGCGTGCGTGCGTCTGTCTGTCTGTGATTCGGCGGACCAACAA
TGACATCGACAACGACAACGACAACGACGACGGGTTTGACAAAGGTTCGG
AGCGGCTTTCCTGGTGCGGGTCGGGCAGCTGGAGACACAGCTCTACGACG
CCTGCCTGGGCCCCGAGGAGGAGGAGGAGGAGCAAGAACAGGTTCAGGTT
CAGGTTCAGAACCAACAACAAAGAGAACCCGCCAGCAGCAGCAACGGCGC
CGAAGAGGTCAAAGGGAGTTCGTCCCCGCGAGGGGAAGCAGCAGGCAAGG
GGGGGCGGGAGAACCAGCAGGAGGAGGACGAGGGCCAAGGAGAAGAGGAA
GAAGAAGCGAAGAGGGAGCTGGACCTCCAGCGGGAGGAGGAAGCCGCCGA
GGTGGAGGAGGGCCGGGCGGGGCTCTACGGGATGCTTCTGCAGCTGTGCT
CCGAGCTGCACAAGCACCTCCGGCCGAGGGTGTACCACGGCACGGACATG
GACACCCTCTGCGAGGTGTGTGCCCGGCCGGGGGGCGTGCGGGCGGGCTG
TCTGGTAGTTCCGAGGAATACAGCGACCGGGGGGGAGGGGCACGGACCAT
GAATCTCTCTTTCAACTGCCTTGGCGAGGATTCTGTTAATTGTAGTAATC
TTATCTAATCTAATGTAATCTACGAGTGTTAACAATCTACGAAGCAGCGA
GGGGGCCTTCGTGTCCCTCACCCAAACCCTACCCCCCAAACCCTTACACC
ACCCCGTGACCCCTGCTACAACCGAGTTCACACTCCTTTCGAAGGTTAAA
CTGCTCTCTTTTTGTTGCTTCCCTGTTACCCGGTCGCGGCTGTAGGCTTC
TACTGCTGTGCTACTAGACTGCTGCTGTGGCACGTCTCCGTCCTCGCTGG
CGTGTTGTTAAATGTTAATGTTGTTTCCTTTCTCTCACGGGTTCCAAACG
TCCTTCCCGCTCTTTTTATATCACGTAATCTATGCTTTAGTTTTCGCTTG
TCTGACCCCCCCCCCCCCCAATGGCAGTGTCTGATTTGGCACACCAAGCA
AAAGGCAAGGATGATGACCAGCTAGCTTTTCTGGTTGGTGCATCCTTATC
CTTGTGAAACGTAGATAGCCTGGGCCGGCTACGAGAACCCGGCATATCGC
TCCTTCCTTCCCAGCCGCGAGGCCTAACGACTACGGCATGGGTTTACACT
CCCCCCCTCCCCTTCCTCCCCCTTGCATTCGGCGTCGACGCCTTCCGTGT
TTGCCAACAGCTTGTCAGCGTGATTCGCGAGGAGATCGTGGAAGAGCAGC
GAGGGCGCCACGGATTGAGCCAGATAAACCCGGTAGCGACGGCGGCGAGA
GGGGCGGGAGCAGGCGGCGAGGGGGATGGTGGCGGGGGAGGGGAGGCTGC
CATCGAGACCATCCTCATGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15235:481..2602+

>mRNA_E-fasciculatus_F_contig15235.3699.1 ID=mRNA_E-fasciculatus_F_contig15235.3699.1|Name=mRNA_E-fasciculatus_F_contig15235.3699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15235:481..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACTGGCCCTGCTTCGGCCCGCTGTCCGCTCTCACCTGGAGGCGATGT
CGAAGCAGAGGGGAATCACCGCCATGATAAGGAGACTGGCCCTGCTTCGG
CCCGCTGTCCGCTCTCACCTGGAGGCGATGTCGAAGCAGAGGGGAATCAC
CGCCATGATAAGGTTCGGAGCGGCTTTCCTGGTGCGGGTCGGGCAGCTGG
AGACACAGCTCTACGACGCCTGCCTGGGCCCCGAGGAGGAGGAGGAGGAG
CAAGAACAGGTTCAGGTTCAGGTTCAGAACCAACAACAAAGAGAACCCGC
CAGCAGCAGCAACGGCGCCGAAGAGGTCAAAGGGAGTTCGTCCCCGCGAG
GGGAAGCAGCAGGCAAGGGGGGGCGGGAGAACCAGCAGGAGGAGGACGAG
GGCCAAGGAGAAGAGGAAGAAGAAGCGAAGAGGGAGCTGGACCTCCAGCG
GGAGGAGGAAGCCGCCGAGGTGGAGGAGGGCCGGGCGGGGCTCTACGGGA
TGCTTCTGCAGCTGTGCTCCGAGCTGCACAAGCACCTCCGGCCGAGGGTG
TACCACGGCACGGACATGGACACCCTCTGCGAGGTTCGGAGCGGCTTTCC
TGGTGCGGGTCGGGCAGCTGGAGACACAGCTCTACGACGCCTGCCTGGGC
CCCGAGGAGGAGGAGGAGGAGCAAGAACAGGTTCAGGTTCAGGTTCAGAA
CCAACAACAAAGAGAACCCGCCAGCAGCAGCAACGGCGCCGAAGAGGTCA
AAGGGAGTTCGTCCCCGCGAGGGGAAGCAGCAGGCAAGGGGGGGCGGGAG
AACCAGCAGGAGGAGGACGAGGGCCAAGGAGAAGAGGAAGAAGAAGCGAA
GAGGGAGCTGGACCTCCAGCGGGAGGAGGAAGCCGCCGAGGTGGAGGAGG
GCCGGGCGGGGCTCTACGGGATGCTTCTGCAGCTGTGCTCCGAGCTGCAC
AAGCACCTCCGGCCGAGGGTGTACCACGGCACGGACATGGACACCCTCTG
CGAGCTTGTCAGCGTGATTCGCGAGGAGATCGTGGAAGAGCAGCGAGGGC
GCCACGGATTGAGCCAGATAAACCCGGTAGCGACGGCGGCGAGAGGGGCG
GGAGCAGGCGGCGAGGGGGATGGTGGCGGGGGAGGGGAGGCTGCCATCGA
GACCATCCTCATGAACTTGTCAGCGTGATTCGCGAGGAGATCGTGGAAGA
GCAGCGAGGGCGCCACGGATTGAGCCAGATAAACCCGGTAGCGACGGCGG
CGAGAGGGGCGGGAGCAGGCGGCGAGGGGGATGGTGGCGGGGGAGGGGAG
GCTGCCATCGAGACCATCCTCATGAA
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