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Homology
BLAST of mRNA_E-fasciculatus_F_contig15230.3697.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 1.420e-20 Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1
Query: 25 SVHRSNALSASTRSLRLFAFRGRSRHTSGFEPYEKFELAPQELIASTSQTNHPAQQDMV 201
+ HR NALSASTRSLRL AFRGRSRHTSGF PYEKFELAPQELIAST+QT QQDM+
Sbjct: 7 TTHRINALSASTRSLRLVAFRGRSRHTSGFGPYEKFELAPQELIASTTQTKRSEQQDML 65
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 97.1 |
| Seed ortholog evalue | 3.5e-18 |
| Seed eggNOG ortholog | 2880.D7G924 |
| KEGG ko | ko:K03178 |
| KEGG Pathway | ko04120,ko05012,map04120,map05012 |
| EggNOG free text desc. | tRNA (guanine-N2-)-methyltransferase activity |
| EggNOG OGs | COG1041@1,KOG2671@2759 |
| EC | 6.2.1.45 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04121,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 382 |
| Cds size | 204 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15230.3697.1 >prot_E-fasciculatus_F_contig15230.3697.1 ID=prot_E-fasciculatus_F_contig15230.3697.1|Name=mRNA_E-fasciculatus_F_contig15230.3697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
ASCCPWLPSVHRSNALSASTRSLRLFAFRGRSRHTSGFEPYEKFELAPQE
LIASTSQTNHPAQQDMV* back to topmRNA from alignment at E-fasciculatus_F_contig15230:289..2706+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15230.3697.1 ID=mRNA_E-fasciculatus_F_contig15230.3697.1|Name=mRNA_E-fasciculatus_F_contig15230.3697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2418bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15230:289..2706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTCATGCTGTCCTTGGTTACCCTCCGTACATAGAAGCAACGCGCTATC
GGCCAGCACGCGATCTCTGAGATTGTTCGCGTTCAGGTGAGCTCCTGCTA
ACCCAGGCAAGCAGAGCTACTACTGCCTTCCGAGAGTAGCAACGGTCAAC
GCAGCGCTCCTTTACATTGAACATGCCTGCCCTGCCAAAATACGTGCATT
TGTACGTCGATATGCATGGTACGCAAACAGGACAAAGTACCCAGCTACTG
ATGTAGTGATTCCTCGATGTGTTCTTCTCTCCGTGCACAGAGGGAGGTCG
CGGCACACGAGTGGTTTTGAGCCGTACGAGAAGTTCGAGCTGGCACCACA
AGAGCTCATCGCTTCGACTTCGCAAACGAATCACCCCGCACAACAGGACA
TGGTCTAGTGCGTCTGCGACAAACAGATGGCTCCGACGTTTTCCAGTGGG
TAGACTCGCCGATGGACGATGCGGATCTCGCTGAGGCAGCCTCGAGGTGC
ATACCCCTCTTCTCTTCCCTAGATGCCTCCATGCAGTACCGCTCGTTCTA
CGTGCTGATGCGAAAGAGGACGTCTTCTCACCGCCTATCCTGTGTGGTCG
GCATGCGTACTTCACCTGCCTTCGCCGTTGGCGTCGTTTGCGAGTGATGC
ATTCAACACCCTCGTCCTTGGAACAGAGTGTCAGACTCGAGGTCTCATCT
ACCCAACCTTCTGTGCAACACGTCTATGCACTGTTGTTGCCCAGCACAGC
AGTAGATGCGAGTCGTCAACACGTACCAATTCTGCTGAACGGTATGCAAA
TTCGGGCTATGCTGATGGTCTCTGCTGTGTGGCACGATATCAGGTGCGTT
TTGCTGCACGGGCTCTTCGAAGTATGGGGGCATGGTCGGAACCGGGAGGA
CGCCGTCAGGGATGCATTCAAGTGAGTGAAGAGTGAAGCGAGAGAGAGAA
ATTGAACGGAATGTGCGATACAGTCCGACACGGCTTCTCAACACAGGAAA
TTCGTGCTGTCCTCGATATTCCCGATACCGGGCATGTCACCGCCTGTCAC
CGCGTCCACACCTGGCCGTCTGGTCGTTTGGGTTGAAGCCTGCGGGTCGG
ACAAGTCGGTCACCAGCTGAACTAGCGTGCACCCGTGCACTCCAGCATAG
CCCGAGCATTCTAGAATGCGCCGATAATAAGACCTTCACCAGTGAGCTCC
AGCTAGCCCCACGCGTAAGCACACATGCTTGCAGCGGCGACAAGTGCTGT
GGTGCGTAGGTTAGTCTTCGATGGTGTGCGGGGTGTTTGTCCCAGGTTTC
GAGGTCCGACGCGCTGTCCTGTGTCATGCTTTTCTCTGCTGTGTTGAGCG
ATAACTGATGCCGGTTGACGTTTGGTGTAAGCGGTGTTCTGGGCTATATC
ACAGCAGACTACATGTAGAGTCGAGACGTTGAGAGACCACGTATTGCTGG
TCTTGTTGCAGATCGGGTCACTTTCTTCAGCACGCCGGCGACGCTTCGTG
GTCTCTGGGGGTGACATGCTACGGCCGGTCTAGCCTCAACAAATCAGAAC
AGCAGCGTCTCGCAGGTGGTTCCGTGGGGACGTTTTTGTCCTCATTCTTG
AATGGTCCAAGGTACGTTTCACACTTTGGAATTTTTTTTTCTGATTTGCC
ACGCGCACACGTCGGCGAGGTGTGATTCTCCTGCGAACAATAATGTGCCC
ACTTTGTTTTTGTGCCAGCCGAGTAGCCTGAACACGTTGCGACTGGAAGG
TATTCGCGCGGTAGCAAAGCAAGCTTCATGCCCAACGTAACCGACGTGTT
TTATGATTGGGTACACAAAACCGAGCAGGTCAAGATATTTAGCCGAAAAT
CAGGTAGTTTCTGTAGCGTGGGGCAATTTGTTGTTTCAGCACGGTGTACA
ACTTTGTCCGCGTACGTTGAACCAACAATCAAGAGCGGAAACAAAAAAGC
AGTTCAGCTAACCGAAGCCACTTCACTAAAGTCATGCTGTATCGACACAC
TTGCGCTTTGCGCAACGCGGACGTGAGTTCAGTAATAGTGGTTGCACTGG
TGTGCTAACTTTAGTTATGTTTCGGGTGTTGGACTTGACGACAAGATTTT
AGCACCAGGACTTTTTTGCCTTTCTGCTGTGCGCATGTCGTGGACTTCGC
CGTGAACCTCCGACTGCTTGATGCCTGCCCACGACCACCCTGTGAAATGT
TCTTGAACGCTTGGTACCCACGTTGCTTTCTCCGGGTTGATCTGCGGAAG
GACCGAGTCGGTGCACAGCGATATCCGCGTCCGGATCATCGAGGACCTTT
GCCCACCCCCCGCCGAAAATTTACCAAGAGATGTCCGAGAACGCGCCCAG
GCAGCGACAGTAGCCGGAAGGAGGAGAGAGAAGGCGTTCTATATCTGCCG
CGAGTTGCAACTGGGGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15230:289..2706+ >mRNA_E-fasciculatus_F_contig15230.3697.1 ID=mRNA_E-fasciculatus_F_contig15230.3697.1|Name=mRNA_E-fasciculatus_F_contig15230.3697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15230:289..2706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTCATGCTGTCCTTGGTTACCCTCCGTACATAGAAGCAACGCGCTATC
GGCCAGCACGCGATCTCTGAGATTGTTCGCGTTCAGGCTTCATGCTGTCC
TTGGTTACCCTCCGTACATAGAAGCAACGCGCTATCGGCCAGCACGCGAT
CTCTGAGATTGTTCGCGTTCAGAGGGAGGTCGCGGCACACGAGTGGTTTT
GAGCCGTACGAGAAGTTCGAGCTGGCACCACAAGAGCTCATCGCTTCGAC
TTCGCAAACGAATCACCCCGCACAACAGGACATGGTCTAGAGGGAGGTCG
CGGCACACGAGTGGTTTTGAGCCGTACGAGAAGTTCGAGCTGGCACCACA
AGAGCTCATCGCTTCGACTTCGCAAACGAATCACCCCGCACAACAGGACA
TGGTCTAG back to top
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