mRNA_E-fasciculatus_F_contig15196.3675.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15196.3675.1
Unique NamemRNA_E-fasciculatus_F_contig15196.3675.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15196.3675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15196contigE-fasciculatus_F_contig15196:638..1091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15196.3675.1prot_E-fasciculatus_F_contig15196.3675.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15196 722..1024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.6222641-UTR-E-fasciculatus_F_contig15196:637..7211622928000.6222641-UTR-E-fasciculatus_F_contig15196:637..721Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15196 638..721 +
1695995783.3642507-UTR-E-fasciculatus_F_contig15196:637..7211695995783.3642507-UTR-E-fasciculatus_F_contig15196:637..721Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15196 638..721 +
1622928000.6425796-UTR-E-fasciculatus_F_contig15196:1024..10911622928000.6425796-UTR-E-fasciculatus_F_contig15196:1024..1091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15196 1025..1091 +
1695995783.3844876-UTR-E-fasciculatus_F_contig15196:1024..10911695995783.3844876-UTR-E-fasciculatus_F_contig15196:1024..1091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15196 1025..1091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.6329095-CDS-E-fasciculatus_F_contig15196:721..10241622928000.6329095-CDS-E-fasciculatus_F_contig15196:721..1024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15196 722..1024 +
1695995783.37486-CDS-E-fasciculatus_F_contig15196:721..10241695995783.37486-CDS-E-fasciculatus_F_contig15196:721..1024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15196 722..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15196.3675.1

>prot_E-fasciculatus_F_contig15196.3675.1 ID=prot_E-fasciculatus_F_contig15196.3675.1|Name=mRNA_E-fasciculatus_F_contig15196.3675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MYMLGHRKHKETKTAPKARVRKASKHGNTVQLGRITMIPTTGGCGDRCGT
ARQVFASIRNDQTHTAFSRTKYPEPQQATKKRGRFNENLGILSGYTTNRY
*
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mRNA from alignment at E-fasciculatus_F_contig15196:638..1091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15196.3675.1 ID=mRNA_E-fasciculatus_F_contig15196.3675.1|Name=mRNA_E-fasciculatus_F_contig15196.3675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15196:638..1091+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGATGCTATTTCGTTTCGCCTCTGCCTCTGGAGCATGCCCTCGCTCG
TGATCAGCTGGAACGCTAGGCGAGGCTGGTTTCTATGTACATGCTTGGAC
ACCGAAAGCACAAAGAAACTAAAACCGCACCAAAAGCTCGTGTACGCAAA
GCTTCAAAGCACGGCAACACAGTACAACTTGGACGGATTACTATGATACC
TACAACAGGGGGGTGCGGCGACAGGTGCGGCACGGCCCGCCAAGTGTTCG
CCAGCATTAGAAACGACCAGACACACACGGCGTTCTCACGCACCAAATAC
CCCGAACCGCAACAAGCGACTAAAAAGAGAGGGCGTTTCAACGAAAATCT
CGGAATTCTTTCAGGATATACTACTAATAGATACTAGCGTCTCTTCTTCC
CTTTGCTGAGCTCCGCCCTTGGCATGCTCCCCCGTGCCTTGTCCATGAGC
GCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15196:638..1091+

>mRNA_E-fasciculatus_F_contig15196.3675.1 ID=mRNA_E-fasciculatus_F_contig15196.3675.1|Name=mRNA_E-fasciculatus_F_contig15196.3675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15196:638..1091+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACATGCTTGGACACCGAAAGCACAAAGAAACTAAAACCGCACCAAA
AGCTCGTGTACGCAAAGCTTCAAAGCACGGCAACACAGTACAACTTGGAC
GGATTACTATGATACCTACAACAGGGGGGTGCGGCGACAGGTGCGGCACG
GCCCGCCAAGTGTTCGCCAGCATTAGAAACGACCAGACACACACGGCGTT
CTCACGCACCAAATACCCCGAACCGCAACAAGCGACTAAAAAGAGAGGGC
GTTTCAACGAAAATCTCGGAATTCTTTCAGGATATACTACTAATAGATAC
TAGATGTACATGCTTGGACACCGAAAGCACAAAGAAACTAAAACCGCACC
AAAAGCTCGTGTACGCAAAGCTTCAAAGCACGGCAACACAGTACAACTTG
GACGGATTACTATGATACCTACAACAGGGGGGTGCGGCGACAGGTGCGGC
ACGGCCCGCCAAGTGTTCGCCAGCATTAGAAACGACCAGACACACACGGC
GTTCTCACGCACCAAATACCCCGAACCGCAACAAGCGACTAAAAAGAGAG
GGCGTTTCAACGAAAATCTCGGAATTCTTTCAGGATATACTACTAATAGA
TACTAG
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