mRNA_E-fasciculatus_F_contig15180.3666.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15180.3666.1
Unique NamemRNA_E-fasciculatus_F_contig15180.3666.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: D8LD71_ECTSI (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD71_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.320e-39
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG AKHLA+DDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG
Sbjct:   73 QMAEGGAKHLARDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 138          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: K9XPN7_STAC7 (Protein tyrosine phosphatase n=2 Tax=Stanieria TaxID=102115 RepID=K9XPN7_STAC7)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-21
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEGWAK L +  +E+ SSGLE SRVHPTA  VM EVG+DI+S TSD L +F    +DAV+SMCG
Sbjct:   16 QMAEGWAKTLGEGKIEVTSSGLEASRVHPTAIEVMSEVGIDISSQTSDPLSNFNADDYDAVISMCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: UPI00056045E3 (arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056045E3)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-21
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+A+ L KD +E+ SSGLE SRVHPTA  VM E+G+DI++ TSD L DF    +DAV+SMCG
Sbjct:   16 QMAEGFARALGKDKIEVTSSGLEASRVHPTAIEVMSEIGIDISNQTSDALSDFNAKDYDAVISMCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: A0A0M1JS80_9CYAN (ArsC family transcriptional regulator n=2 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JS80_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.310e-21
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+AKHL K  + + SSGLE SRVHPTA  VM E+G+DIT  TS+ L +F P ++DAV+S+CG
Sbjct:   16 QMAEGFAKHLGKGKITVTSSGLESSRVHPTAIRVMSEIGIDITDQTSNPLSEFQPENYDAVISLCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: UPI00056BA52C (arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056BA52C)

HSP 1 Score: 88.6 bits (218), Expect = 4.570e-21
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEGWAK L +  +++ SSGLE SRVHPTA  VM E+G+DI++ TSD L DF    +DAV+SMCG
Sbjct:   16 QMAEGWAKTLGEGKIKVTSSGLEASRVHPTAKEVMSEIGIDISNQTSDALSDFNARDYDAVISMCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: A0A7C9PUZ9_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PUZ9_9CYAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.080e-21
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+A+ L +D +E+ SSGLE S+VHPTA  VM E+G+DI++ TSD L DF P+ +D V+SMCG
Sbjct:   17 QMAEGFARTLGEDKIEVSSSGLEASKVHPTAIQVMSEIGIDISNQTSDDLRDFNPSDYDVVISMCG 82          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: L8LHA5_9CHRO (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LHA5_9CHRO)

HSP 1 Score: 90.5 bits (223), Expect = 1.840e-20
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+AK L KD +E+ SSGLE SRVHPTA  VMQE+G+DI+  +S  ++DFT T +DAV+S+CG
Sbjct:   16 QMAEGFAKTLGKDKIEVTSSGLEASRVHPTAIEVMQEIGIDISDQSSKPINDFTATDYDAVISLCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: A0A2T1CN74_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CN74_9CYAN)

HSP 1 Score: 86.3 bits (212), Expect = 3.710e-20
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+AK L KD +E+ SSGLE SRVHPTA  VM E+G+DI++ TSD L  F    +DAV+S+CG
Sbjct:   16 QMAEGFAKTLGKDKIEVTSSGLEASRVHPTANKVMSEIGIDISNQTSDPLSAFNADDYDAVISLCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: A3IM52_9CHRO (Arsenate reductase n=1 Tax=Crocosphaera chwakensis CCY0110 TaxID=391612 RepID=A3IM52_9CHRO)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-20
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+AK L K+ +E+ SSGLE SRVHPTA  VM+E+G++IT  TSD L +F   ++DAV+S+CG
Sbjct:   16 QMAEGFAKTLGKNKIEVTSSGLEASRVHPTAIKVMEEIGINITDQTSDPLSEFDADNYDAVISLCG 81          
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Match: K9TJ35_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=2 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TJ35_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 6.150e-20
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 QMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 198
            QMAEG+AK L +  +E+ SSGLE SRVHPTA  VM+E+GVDIT+ TSD L DF    +D V+S+CG
Sbjct:   17 QMAEGFAKTLGEGKIEVTSSGLESSRVHPTAVEVMEEIGVDITNQTSDPLSDFQAEDYDVVISLCG 82          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15180.3666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD71_ECTSI4.320e-3996.97Arsenate reductase, glutathione/glutaredoxin type ... [more]
K9XPN7_STAC72.280e-2163.64Protein tyrosine phosphatase n=2 Tax=Stanieria Tax... [more]
UPI00056045E32.280e-2162.12arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A0M1JS80_9CYAN3.310e-2160.61ArsC family transcriptional regulator n=2 Tax=Plan... [more]
UPI00056BA52C4.570e-2160.61arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A7C9PUZ9_9CYAN5.080e-2159.09Arsenate reductase, glutathione/glutaredoxin type ... [more]
L8LHA5_9CHRO1.840e-2062.12Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A2T1CN74_9CYAN3.710e-2060.61Arsenate reductase, glutathione/glutaredoxin type ... [more]
A3IM52_9CHRO5.400e-2059.09Arsenate reductase n=1 Tax=Crocosphaera chwakensis... [more]
K9TJ35_9CYAN6.150e-2060.61Arsenate reductase, glutathione/glutaredoxin type ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15180contigE-fasciculatus_F_contig15180:633..1150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D8LD71
EggNOG free text desc.Low molecular weight phosphatase family
EggNOG OGs2SAW9@2759,COG0394@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-05_001560.1
Exons2
Model size201
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15180.3666.1prot_E-fasciculatus_F_contig15180.3666.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15180 633..1147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.4566064-CDS-E-fasciculatus_F_contig15180:632..7371622927997.4566064-CDS-E-fasciculatus_F_contig15180:632..737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15180 633..737 -
1695995782.909335-CDS-E-fasciculatus_F_contig15180:632..7371695995782.909335-CDS-E-fasciculatus_F_contig15180:632..737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15180 633..737 -
1622927997.4692433-CDS-E-fasciculatus_F_contig15180:1054..11471622927997.4692433-CDS-E-fasciculatus_F_contig15180:1054..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15180 1055..1147 -
1695995782.9235635-CDS-E-fasciculatus_F_contig15180:1054..11471695995782.9235635-CDS-E-fasciculatus_F_contig15180:1054..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15180 1055..1147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.486149-UTR-E-fasciculatus_F_contig15180:1147..11501622927997.486149-UTR-E-fasciculatus_F_contig15180:1147..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15180 1148..1150 -
1695995782.9322999-UTR-E-fasciculatus_F_contig15180:1147..11501695995782.9322999-UTR-E-fasciculatus_F_contig15180:1147..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15180 1148..1150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15180.3666.1

>prot_E-fasciculatus_F_contig15180.3666.1 ID=prot_E-fasciculatus_F_contig15180.3666.1|Name=mRNA_E-fasciculatus_F_contig15180.3666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLH
DFTPTHFDAVVSMCG*
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mRNA from alignment at E-fasciculatus_F_contig15180:633..1150-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15180.3666.1 ID=mRNA_E-fasciculatus_F_contig15180.3666.1|Name=mRNA_E-fasciculatus_F_contig15180.3666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15180:633..1150- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATGGCGGAGGGGTGGGCGAAGCACCTCGCCAAGGACGACCTGGAGAT CTGGAGCTCGGGGCTGGAGGGGTCTAGGGTACACCCGACCGCTACGGTGA GCAAGCGAGCGATCAGCAGCGCTCGCGGTCAGCAAAGAACGATGTGTGTG CGCTTCGGGTCTGATTTGAGAGACTCAGAGGTATCGGTGGAAGGGTTAAA GTTCTTTTCTCAAATCAACCCTCACTTGCTGCAAGATACTTCCATTAATA TGCTGCTCGAGTGCTGCTTCCCCGCTGACGCACCTGCTGTGCATACATGT CATTTTTGTTGTGTGTTTTACACCGAAACACCGATTGTTTGTTTTCATTT TGGCTTTTCTCCCTGATGTGTTTTGTGCTTTTTTTCGCTGCTTTCCCGAC ACACATTTCGCAGGCGGTGATGCAGGAAGTCGGCGTTGACATCACCAGCC ACACCTCCGACTACCTCCACGACTTCACACCGACCCACTTCGATGCGGTC GTGTCCATGTGTGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15180:633..1150-

>mRNA_E-fasciculatus_F_contig15180.3666.1 ID=mRNA_E-fasciculatus_F_contig15180.3666.1|Name=mRNA_E-fasciculatus_F_contig15180.3666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15180:633..1150- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGAGGGGTGGGCGAAGCACCTCGCCAAGGACGACCTGGAGATCTG
GAGCTCGGGGCTGGAGGGGTCTAGGGTACACCCGACCGCTACGATGGCGG
AGGGGTGGGCGAAGCACCTCGCCAAGGACGACCTGGAGATCTGGAGCTCG
GGGCTGGAGGGGTCTAGGGTACACCCGACCGCTACGGCGGTGATGCAGGA
AGTCGGCGTTGACATCACCAGCCACACCTCCGACTACCTCCACGACTTCA
CACCGACCCACTTCGATGCGGTCGTGTCCATGTGTGGGTGAGCGGTGATG
CAGGAAGTCGGCGTTGACATCACCAGCCACACCTCCGACTACCTCCACGA
CTTCACACCGACCCACTTCGATGCGGTCGTGTCCATGTGTGGGTGA
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