mRNA_E-fasciculatus_F_contig15143.3647.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15143.3647.1
Unique NamemRNA_E-fasciculatus_F_contig15143.3647.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15143.3647.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.510e-31
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2 
Query:    2 KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCLVRATQMSPIREIA 187
            KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWC V+ATQMSP RE+A
Sbjct:    3 KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQMSPTREVA 64
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BLAST of mRNA_E-fasciculatus_F_contig15143.3647.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.210e-23
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 2 
Query:    2 KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCLVRATQMSPIRE 181
            KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWC V+ATQ     E
Sbjct: 1172 KRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQQPATSE 1231
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15143.3647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD5_ECTSI1.510e-3193.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE2.210e-2388.33GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15143contigE-fasciculatus_F_contig15143:1946..2352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.121657-CDS-E-fasciculatus_F_contig15143:1946..19721622927995.121657-CDS-E-fasciculatus_F_contig15143:1946..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15143 1947..1972 -
1695995781.879558-CDS-E-fasciculatus_F_contig15143:1946..19721695995781.879558-CDS-E-fasciculatus_F_contig15143:1946..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15143 1947..1972 -
1622927995.1394856-CDS-E-fasciculatus_F_contig15143:2189..23521622927995.1394856-CDS-E-fasciculatus_F_contig15143:2189..2352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15143 2190..2352 -
1695995781.888078-CDS-E-fasciculatus_F_contig15143:2189..23521695995781.888078-CDS-E-fasciculatus_F_contig15143:2189..2352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15143 2190..2352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15143.3647.1prot_E-fasciculatus_F_contig15143.3647.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15143 1947..2352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15143.3647.1

>prot_E-fasciculatus_F_contig15143.3647.1 ID=prot_E-fasciculatus_F_contig15143.3647.1|Name=mRNA_E-fasciculatus_F_contig15143.3647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
EAPEVSALQVAEVEPQQGRRPRRPQGARSAAEGVHRCPQGAPRGQHVVPR
QSYTDVPYTGDCR
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mRNA from alignment at E-fasciculatus_F_contig15143:1946..2352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15143.3647.1 ID=mRNA_E-fasciculatus_F_contig15143.3647.1|Name=mRNA_E-fasciculatus_F_contig15143.3647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=407bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15143:1946..2352- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCGCCTGAAGTCTCTGCTCTCCAAGTTGCAGAAGTCGAGCCACAGCA
AGGACGCAGACCTCGCCGCCCTCAAGGCGCCCGCTCCGCCGCCGAAGGCG
TTCACCGTTGCCCTCAGGGTGCGCCACGAGGGCAGCACGTGGTGCCTCGT
CAGAGCTACACAGGTCTGTTCGAGCGTCGAGCGGGACAGCGCAGTGTTTC
GACGGATGTCGCGTATTATATGAAGCGGGACAGCAGTACTGTTTCAATCG
ACAGCAGGTGTCGGAGTTCTCGAGCAGGCAGGCAGTCGGAACATCGTTTA
TTGTTTATTACTGTACTGCGGTGCTCTGTCGCGCACATTTTTTTTGCGGT
AAACATGGATGTACACGGCGTTTTTTCGAGATGTCCCCTATACGGGAGAT
TGCCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15143:1946..2352-

>mRNA_E-fasciculatus_F_contig15143.3647.1 ID=mRNA_E-fasciculatus_F_contig15143.3647.1|Name=mRNA_E-fasciculatus_F_contig15143.3647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15143:1946..2352- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCGCCTGAAGTCTCTGCTCTCCAAGTTGCAGAAGTCGAGCCACAGCA
AGGACGCAGACCTCGCCGCCCTCAAGGCGCCCGCTCCGCCGCCGAAGGCG
TTCACCGTTGCCCTCAGGGTGCGCCACGAGGGCAGCACGTGGTGCCTCGT
CAGAGCTACACAGGAAGCGCCTGAAGTCTCTGCTCTCCAAGTTGCAGAAG
TCGAGCCACAGCAAGGACGCAGACCTCGCCGCCCTCAAGGCGCCCGCTCC
GCCGCCGAAGGCGTTCACCGTTGCCCTCAGGGTGCGCCACGAGGGCAGCA
CGTGGTGCCTCGTCAGAGCTACACAGATGTCCCCTATACGGGAGATTGCC
GGATGTCCCCTATACGGGAGATTGCCGG
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