mRNA_E-fasciculatus_F_contig15109.3622.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15109.3622.1
Unique NamemRNA_E-fasciculatus_F_contig15109.3622.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.890e-13
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAV 129
            AY++V+ WTR  DLF KKFV VPVV +MHWSLAC+CNLD L V
Sbjct:  423 AYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEV 465
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.380e-13
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAV 129
            AY++V+ WTR  DLF KKFV VPVV ++HWSLAC+CNLD L V
Sbjct:  725 AYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEV 767
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: D7FP60_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.590e-11
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTL 123
            AY+ V+ W  G ++F+KKFV VPVV ++HWSL+C+CNLD L
Sbjct:   19 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQL 59
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: D7FI86_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.930e-11
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTL 123
            AY+ V+ W  G ++F+KKFV VPVV ++HWSL+C+CNLD L
Sbjct:   19 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQL 59
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: A0A6J0KSD7_RAPSA (probable ubiquitin-like-specific protease 2B n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KSD7_RAPSA)

HSP 1 Score: 61.6 bits (148), Expect = 7.140e-10
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAVCT 135
            A+ RVR WTR  DLF K F+FVPV +N+HWSL  +C+   +A CT
Sbjct:  475 AFLRVRKWTRKVDLFGKDFIFVPVNFNLHWSLIIICHPGEVANCT 519
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: UPI000900B4A7 (probable ubiquitin-like-specific protease 2B isoform X1 n=6 Tax=Camelina sativa TaxID=90675 RepID=UPI000900B4A7)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAVCT 135
            A+ RVR WTR  D+FSK ++FVPV +N+HWSL  +C+   +A CT
Sbjct:  499 AFLRVRKWTRKVDMFSKDYIFVPVNFNLHWSLIVICHPGEVANCT 543
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: A0A087HMC0_ARAAL (ULP_PROTEASE domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HMC0_ARAAL)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAVCT 135
            A+ RVR WTR  D+F K F+FVPV +N+HWSL  VC+   +A CT
Sbjct:  465 AFLRVRKWTRKVDMFGKDFIFVPVNFNLHWSLIVVCHPGEVANCT 509
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: A0A2J6LV41_LACSA (ULP_PROTEASE domain-containing protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LV41_LACSA)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLA 126
            A+ RVR WTR  +LF K FVF+PV+YN HWSL  +C+L  +A
Sbjct:  243 AFQRVRKWTRKVNLFEKDFVFIPVIYNYHWSLIVMCHLGEVA 284
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BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: F0YQ64_AURAN (ULP_PROTEASE domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ64_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTL 123
            AY RV  WTRG D+FSKKF+ VP+V ++HWSLA VC+   L
Sbjct:  331 AYDRVERWTRGVDVFSKKFLVVPIVEHLHWSLAIVCHPGAL 371
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Match: A0A6J0M228_RAPSA (probable ubiquitin-like-specific protease 2B n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M228_RAPSA)

HSP 1 Score: 59.7 bits (143), Expect = 2.460e-9
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAVCT 135
            A+ RVR WTR  D+F K ++FVPV +N+HWSL  +C+   +A CT
Sbjct:  147 AFLRVRKWTRKVDMFGKDYIFVPVNFNLHWSLIIICHPGEVANCT 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15109.3622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN6_ECTSI2.890e-1369.77ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE7.380e-1367.44ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FP60_ECTSI1.590e-1158.54SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D7FI86_ECTSI1.930e-1158.54SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A6J0KSD7_RAPSA7.140e-1055.56probable ubiquitin-like-specific protease 2B n=2 T... [more]
UPI000900B4A79.760e-1053.33probable ubiquitin-like-specific protease 2B isofo... [more]
A0A087HMC0_ARAAL9.760e-1055.56ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A2J6LV41_LACSA1.820e-957.14ULP_PROTEASE domain-containing protein n=1 Tax=Lac... [more]
F0YQ64_AURAN1.820e-960.98ULP_PROTEASE domain-containing protein n=2 Tax=Aur... [more]
A0A6J0M228_RAPSA2.460e-951.11probable ubiquitin-like-specific protease 2B n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15109contigE-fasciculatus_F_contig15109:2227..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog2880.D8LDN6
KEGG koko:K08596
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.638777-CDS-E-fasciculatus_F_contig15109:2226..23641622927991.638777-CDS-E-fasciculatus_F_contig15109:2226..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15109 2227..2364 +
1695995780.7630713-CDS-E-fasciculatus_F_contig15109:2226..23641695995780.7630713-CDS-E-fasciculatus_F_contig15109:2226..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15109 2227..2364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15109.3622.1prot_E-fasciculatus_F_contig15109.3622.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15109 2227..2364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15109.3622.1

>prot_E-fasciculatus_F_contig15109.3622.1 ID=prot_E-fasciculatus_F_contig15109.3622.1|Name=mRNA_E-fasciculatus_F_contig15109.3622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=46bp
AYTRVRTWTRGADLFSKKFVFVPVVYNMHWSLACVCNLDTLAVCT*
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mRNA from alignment at E-fasciculatus_F_contig15109:2227..2364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15109.3622.1 ID=mRNA_E-fasciculatus_F_contig15109.3622.1|Name=mRNA_E-fasciculatus_F_contig15109.3622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15109:2227..2364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATACACTAGAGTGCGAACATGGACAAGGGGTGCTGATCTCTTTAGCAA
GAAGTTCGTCTTCGTGCCGGTCGTGTACAACATGCACTGGAGCCTTGCGT
GTGTCTGCAACCTCGACACATTGGCGGTGTGTACCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15109:2227..2364+

>mRNA_E-fasciculatus_F_contig15109.3622.1 ID=mRNA_E-fasciculatus_F_contig15109.3622.1|Name=mRNA_E-fasciculatus_F_contig15109.3622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15109:2227..2364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATACACTAGAGTGCGAACATGGACAAGGGGTGCTGATCTCTTTAGCAA
GAAGTTCGTCTTCGTGCCGGTCGTGTACAACATGCACTGGAGCCTTGCGT
GTGTCTGCAACCTCGACACATTGGCGGTGTGTACCTGAGCATACACTAGA
GTGCGAACATGGACAAGGGGTGCTGATCTCTTTAGCAAGAAGTTCGTCTT
CGTGCCGGTCGTGTACAACATGCACTGGAGCCTTGCGTGTGTCTGCAACC
TCGACACATTGGCGGTGTGTACCTGA
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