mRNA_E-fasciculatus_F_contig15107.3620.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15107.3620.1
Unique NamemRNA_E-fasciculatus_F_contig15107.3620.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15107.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15107contigE-fasciculatus_F_contig15107:138..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15107.3620.1prot_E-fasciculatus_F_contig15107.3620.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15107 210..426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.4822183-UTR-E-fasciculatus_F_contig15107:137..2091622927991.4822183-UTR-E-fasciculatus_F_contig15107:137..209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 138..209 +
1695995780.6983705-UTR-E-fasciculatus_F_contig15107:137..2091695995780.6983705-UTR-E-fasciculatus_F_contig15107:137..209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 138..209 +
1622927991.5305161-UTR-E-fasciculatus_F_contig15107:426..4451622927991.5305161-UTR-E-fasciculatus_F_contig15107:426..445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 427..445 +
1695995780.7244399-UTR-E-fasciculatus_F_contig15107:426..4451695995780.7244399-UTR-E-fasciculatus_F_contig15107:426..445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 427..445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.498039-CDS-E-fasciculatus_F_contig15107:209..3871622927991.498039-CDS-E-fasciculatus_F_contig15107:209..387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 210..387 +
1695995780.706705-CDS-E-fasciculatus_F_contig15107:209..3871695995780.706705-CDS-E-fasciculatus_F_contig15107:209..387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 210..387 +
1622927991.5144103-CDS-E-fasciculatus_F_contig15107:397..4261622927991.5144103-CDS-E-fasciculatus_F_contig15107:397..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 398..426 +
1695995780.7154121-CDS-E-fasciculatus_F_contig15107:397..4261695995780.7154121-CDS-E-fasciculatus_F_contig15107:397..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 398..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15107.3620.1

>prot_E-fasciculatus_F_contig15107.3620.1 ID=prot_E-fasciculatus_F_contig15107.3620.1|Name=mRNA_E-fasciculatus_F_contig15107.3620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MHSLVYSSSLAQTAPGLSFRLCTAAADKERCSLCWYDIHTKCVDMAFFLV
AKPSSPSSSRASSSTYYR*
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mRNA from alignment at E-fasciculatus_F_contig15107:138..445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15107.3620.1 ID=mRNA_E-fasciculatus_F_contig15107.3620.1|Name=mRNA_E-fasciculatus_F_contig15107.3620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=308bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15107:138..445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTACAGTAGCAGCAGTCTAGGTGTATGTGGGGGTCATCCCACGCGGCG
ATCGAAAAACGGCAGTCCGCGTATGCATAGTCTAGTCTACAGCAGTAGTC
TAGCACAGACTGCTCCCGGCCTGTCATTTAGACTATGCACAGCAGCAGCT
GACAAAGAAAGGTGTAGTCTATGCTGGTATGATATACATACGAAATGTGT
AGATATGGCCTTCTTTTTGGTTGCTAAGCCGAGCTCACCCAGCAGCAGCA
GCAGCAGCAGGAGCAAGCAGCAGTACATACTACAGGTGAAGCGTAGAGAT
TGCTGTTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15107:138..445+

>mRNA_E-fasciculatus_F_contig15107.3620.1 ID=mRNA_E-fasciculatus_F_contig15107.3620.1|Name=mRNA_E-fasciculatus_F_contig15107.3620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15107:138..445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATAGTCTAGTCTACAGCAGTAGTCTAGCACAGACTGCTCCCGGCCT
GTCATTTAGACTATGCACAGCAGCAGCTGACAAAGAAAGGTGTAGTCTAT
GCTGGTATGATATACATACGAAATGTGTAGATATGGCCTTCTTTTTGGTT
GCTAAGCCGAGCTCACCCAGCAGCAGCAATGCATAGTCTAGTCTACAGCA
GTAGTCTAGCACAGACTGCTCCCGGCCTGTCATTTAGACTATGCACAGCA
GCAGCTGACAAAGAAAGGTGTAGTCTATGCTGGTATGATATACATACGAA
ATGTGTAGATATGGCCTTCTTTTTGGTTGCTAAGCCGAGCTCACCCAGCA
GCAGCAGAGCAAGCAGCAGTACATACTACAGGTGAGAGCAAGCAGCAGTA
CATACTACAGGTGA
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