mRNA_E-fasciculatus_F_contig15078.3600.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15078.3600.1
Unique NamemRNA_E-fasciculatus_F_contig15078.3600.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: D7FNY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNY9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.790e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:   37 RKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            RKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV
Sbjct:   42 RKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 101          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A835Z9S3_9STRA (Double-stranded DNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.480e-18
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   28 QERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            +++R+ ILDQIM  EAR RL+NIAMVK DKAR +E+MLI AA  GKLGGKV+++QF+QMLE V
Sbjct:   33 EDQRRSILDQIMMPEARERLNNIAMVKKDKARALEDMLISAAKQGKLGGKVSQEQFVQMLEGV 95          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: L8GJP2_ACACA (Double-stranded DNA-binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJP2_ACACA)

HSP 1 Score: 73.9 bits (180), Expect = 2.590e-15
Identity = 37/62 (59.68%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   31 ERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            ERR+QIL QI+T EAR R++ I++VKP+KAR+VE+M+I AA SG+LGGKV E   I +L+Q+
Sbjct:   42 ERRRQILAQILTAEARERMARISLVKPEKARQVEDMIIGAAQSGQLGGKVNEANLISLLDQI 103          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: F4PGL7_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGL7_CAVFA)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-14
Identity = 37/68 (54.41%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   13 QEQQEQERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            Q+++++ERR+ I+ QI+T +AR RLS IAMVKPDKAR++E+ML++AA +G+L  KV E + I +LEQ+
Sbjct:   23 QKREQEERRQHIILQILTHDARERLSRIAMVKPDKARQIEDMLVNAAQTGRLSEKVDEQKLISLLEQI 90          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: W7U6K2_9STRA (Programmed cell death protein 5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6K2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.130e-14
Identity = 37/63 (58.73%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   28 QERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            +ERR+ +LDQI++ EA+ RL+ IA+V+ +K R V++MLI AATSG+L GKV+E+Q I+MLEQV
Sbjct:   44 EERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQV 106          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A6U1MCS4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MCS4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.850e-14
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   28 QERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            +E+RK ++D I++ EA+ RL NIA VKP+KAR VE++L+ AAT+G+L GKVTE Q + MLE +
Sbjct:   36 EEQRKVMIDHILSQEAKQRLGNIAAVKPEKARGVEDLLLKAATNGQLQGKVTESQLVSMLESI 98          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A8J8NIJ5_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NIJ5_HALGN)

HSP 1 Score: 69.7 bits (169), Expect = 5.650e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   31 ERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            E+RK IL QI+T EA+ RLSNIA+VKP+KA ++E +LI  A  GK+ GKVTE Q I +LEQV
Sbjct:    3 EQRKAILGQILTNEAKERLSNIAVVKPEKAEKLEMLLIQNAQRGKIQGKVTEGQMIDLLEQV 64          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A835PYF1_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PYF1_VANPL)

HSP 1 Score: 70.1 bits (170), Expect = 9.480e-14
Identity = 34/63 (53.97%), Postives = 52/63 (82.54%), Query Frame = 1
Query:   28 QERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            +ERR+ +L QI++ EAR RL+ IA+VKPDKAR VE++++ AA +G++G KV+ED+ I +LEQ+
Sbjct:   43 EERRQLMLSQILSAEARERLARIALVKPDKARGVEDVILRAAQAGQIGEKVSEDRLISLLEQI 105          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A1D1V6A2_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1V6A2_RAMVA)

HSP 1 Score: 69.7 bits (169), Expect = 1.770e-13
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 HTPP-QEQQEQERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            H P  Q++Q+ E R  IL Q++   AR RL+ IA+ KP+KAR VE +++  AT G+LGGK++E+QF+Q+L QV
Sbjct:   40 HNPEEQKRQQDEMRHSILSQVLDQSARARLNTIALAKPEKARMVENLIVQMATRGQLGGKLSEEQFVQILSQV 112          
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Match: A0A194S7K2_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S7K2_RHOGW)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-13
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 EQERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQV 216
            E ERR+  + QI++ EAR RLS IA+VKPD+AR +E++L+  A SG+L G+V+EDQ I +L+QV
Sbjct:   48 EDERRRAAMSQILSSEARERLSRIALVKPDRARAIEQLLMRMAQSGQLRGRVSEDQLIDVLDQV 111          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15078.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY9_ECTSI7.790e-31100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9S3_9STRA7.480e-1866.67Double-stranded DNA-binding domain-containing prot... [more]
L8GJP2_ACACA2.590e-1559.68Double-stranded DNA-binding domain containing prot... [more]
F4PGL7_CAVFA1.070e-1454.41Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
W7U6K2_9STRA4.130e-1458.73Programmed cell death protein 5 n=2 Tax=Monodopsid... [more]
A0A6U1MCS4_9STRA4.850e-1455.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J8NIJ5_HALGN5.650e-1461.29Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A835PYF1_VANPL9.480e-1453.97Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A1D1V6A2_RAMVA1.770e-1349.32Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A194S7K2_RHOGW2.680e-1354.69Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15078contigE-fasciculatus_F_contig15078:288..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D7FNY9
Preferred namePDCD5
KEGG rclassRC00726
KEGG koko:K00077,ko:K03354,ko:K03860,ko:K05389,ko:K06875
KEGG TC1.A.1.7
KEGG ReactionR02472,R05916
KEGG Pathwayko00563,ko00770,ko01100,ko01110,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00563,map00770,map01100,map01110,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00119,M00389
GOsGO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005539,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006979,GO:0008047,GO:0008092,GO:0008150,GO:0008201,GO:0008219,GO:0008285,GO:0009636,GO:0009719,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010421,GO:0010468,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010698,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015631,GO:0019222,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0036473,GO:0036474,GO:0042127,GO:0042221,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0048487,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070301,GO:0070848,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0080090,GO:0090087,GO:0090199,GO:0090200,GO:0090316,GO:0097159,GO:0097237,GO:0097367,GO:0097468,GO:0098772,GO:1901363,GO:1901681,GO:1901700,GO:1901701,GO:1903214,GO:1903332,GO:1903333,GO:1903533,GO:1903636,GO:1903638,GO:1903644,GO:1903645,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904589,GO:1904591,GO:1904951,GO:1905475,GO:1905477,GO:2000116,GO:2001056,GO:2001233,GO:2001235
EggNOG free text desc.regulation of protein import into mitochondrial outer membrane
EggNOG OGsCOG2118@1,KOG3431@2759
EC1.1.1.169
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04040,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDCD5-related protein
Ec32 orthologEc-10_004870.1
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.887437-CDS-E-fasciculatus_F_contig15078:287..4061622927986.887437-CDS-E-fasciculatus_F_contig15078:287..406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15078 288..406 -
1695995779.3156605-CDS-E-fasciculatus_F_contig15078:287..4061695995779.3156605-CDS-E-fasciculatus_F_contig15078:287..406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15078 288..406 -
1622927986.9039085-CDS-E-fasciculatus_F_contig15078:973..10701622927986.9039085-CDS-E-fasciculatus_F_contig15078:973..1070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15078 974..1070 -
1695995779.327742-CDS-E-fasciculatus_F_contig15078:973..10701695995779.327742-CDS-E-fasciculatus_F_contig15078:973..1070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15078 974..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15078.3600.1prot_E-fasciculatus_F_contig15078.3600.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15078 288..1070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15078.3600.1

>prot_E-fasciculatus_F_contig15078.3600.1 ID=prot_E-fasciculatus_F_contig15078.3600.1|Name=mRNA_E-fasciculatus_F_contig15078.3600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
HTPPQEQQEQERRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHA
ATSGKLGGKVTEDQFIQMLEQV
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mRNA from alignment at E-fasciculatus_F_contig15078:288..1070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15078.3600.1 ID=mRNA_E-fasciculatus_F_contig15078.3600.1|Name=mRNA_E-fasciculatus_F_contig15078.3600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=783bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15078:288..1070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACCCCACCACAGGAGCAGCAGGAGCAGGAACGACGAAAGCAGATCCT GGACCAAATCATGACTGTGGAGGCACGCCTCCGTTTGAGCAACATCGGTG GGTCCCGCACTTCGACGGGAACGTCGTGGTCGTTTTTTTTTGTAGCATGC GCGATAGGAATCAAGGCTTTGCGGCGGATCCTTGATACAGTAGATTCGCA CCGCCTGGCCCGTTTTTCAACGCACAATTACTCCACAGCAGAAAGAGTGG CGTTCCGAAGATCGCAGCGCTGGACCCGTCTCTAGTTTTCAAAAATGTAT CATTTAATTTATGCATCCTCTTCCTTCGTGGAGTAGTCGAGCTTTGAAAA TCGGGTCCAGGAGGTGTGTTCTACCTTGTCGCTTATTGTTCATTACGGCA CAACTTAAACTTACGATAGATGCAGGACAACTGCATCTCTGGTTCGTCTT TGTGTTCATTCGTGCCCAGTCTTGCACCGGCAACGGTTCCAGCAGCGGTG ATGCCTTCGTTTCGACTCCCAACACGGATAGTTGCAATTGAAAGTCTTTG CCCAAGCATCCATGACACCGATAACGCATCTCCCACCTTCATGTCGCATC CCTCACCGTGCTCGAGTATAGTTGAAGAAATATGAACTTTTTTTCACTCT TGGCACACACACAGCAATGGTAAAGCCGGACAAGGCGAGACGCGTGGAGG AAATGCTAATACATGCAGCGACGTCGGGGAAACTCGGCGGCAAGGTGACG GAGGACCAGTTCATCCAGATGTTGGAGCAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15078:288..1070-

>mRNA_E-fasciculatus_F_contig15078.3600.1 ID=mRNA_E-fasciculatus_F_contig15078.3600.1|Name=mRNA_E-fasciculatus_F_contig15078.3600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15078:288..1070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACCCCACCACAGGAGCAGCAGGAGCAGGAACGACGAAAGCAGATCCT
GGACCAAATCATGACTGTGGAGGCACGCCTCCGTTTGAGCAACATCGCAC
ACCCCACCACAGGAGCAGCAGGAGCAGGAACGACGAAAGCAGATCCTGGA
CCAAATCATGACTGTGGAGGCACGCCTCCGTTTGAGCAACATCGCAATGG
TAAAGCCGGACAAGGCGAGACGCGTGGAGGAAATGCTAATACATGCAGCG
ACGTCGGGGAAACTCGGCGGCAAGGTGACGGAGGACCAGTTCATCCAGAT
GTTGGAGCAGGTACAATGGTAAAGCCGGACAAGGCGAGACGCGTGGAGGA
AATGCTAATACATGCAGCGACGTCGGGGAAACTCGGCGGCAAGGTGACGG
AGGACCAGTTCATCCAGATGTTGGAGCAGGTA
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