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Homology
BLAST of mRNA_E-fasciculatus_F_contig15073.3598.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 5.320e-16 Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1
Query: 25 APSAIGLEPGDGDQHGYDKWAMPPVPDSMRGSFGLPRGVGVSRGSGGG 168
APSAIGLEPG+GDQ+GYDKWAMPPVPDSMRGSF LPRG G RGSG G
Sbjct: 395 APSAIGLEPGEGDQNGYDKWAMPPVPDSMRGSFCLPRGGGGPRGSGSG 442
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 87.4 |
| Seed ortholog evalue | 9.1e-15 |
| Seed eggNOG ortholog | 2880.D7G1V7 |
| EggNOG free text desc. | RNA polymerase II transcription regulator recruiting activity |
| EggNOG OGs | COG5147@1,KOG0048@2759 |
| COG Functional cat. | ADK |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | SANT/Myb domain transcription factor |
| Ec32 ortholog | Ec-07_003950.1 |
| Exons | 3 |
| Model size | 674 |
| Cds size | 672 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15073.3598.1 >prot_E-fasciculatus_F_contig15073.3598.1 ID=prot_E-fasciculatus_F_contig15073.3598.1|Name=mRNA_E-fasciculatus_F_contig15073.3598.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp
AAAEAAAAAPSAIGLEPGDGDQHGYDKWAMPPVPDSMRGSFGLPRGVGVS
RGSGGGTHWTTPPSPLGGGRGNSSGGGGGGSGAYSTLFNASSLANPPRSP
YSTNQPADSNGGGDSGKGAAERASTPTSSSAQAADASVPAVVTAATTAAS
AAAAAAAARGNKYPAHLSGARYPMPPPGYYLGPGAAGSGAGGGGGSGSSS
SGGGRVDDGAAPCHSPPPLGVGGG back to topmRNA from alignment at E-fasciculatus_F_contig15073:1477..2898+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15073.3598.1 ID=mRNA_E-fasciculatus_F_contig15073.3598.1|Name=mRNA_E-fasciculatus_F_contig15073.3598.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15073:1477..2898+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCTGCCGAGGCTGCCGCCGCCGCTCCGTCCGCGATAGGCCTTGAGCC
GGGAGATGGTGACCAGCACGGGTATGACAAGTGAGTGGGCGTGGAGCGTA
CTAGAGCGTCGATTTCTGTCATCATCGATACAGCGGTGTAGTGTATGTTG
GTAGATGGGTTGTTCTGTTTGGCTGCCCATGGTCGAGCTGTGTGAAAAGG
TGAGGATGTGCACTTTTTGTTGTTATTTTTGTTTCATGGTGCGGGAGAAG
AGAGTCTCACCGGTGGCACGCAAGAGAGACGACGAAAACTTAAACTTCAC
GCCACTCAACGGAAACAAGGAAGCTGAGCGAACGACGCAACCAGTGTCCT
TCATGCCACTTCCTTCCTCCTTCTCCTTCCACCCCCCCTCATTGGCTGTC
CTGTTACCTCATTCCACCTCCGACCACTACCCGTGACGCGTGATGCCCCT
GTTGTTGTGTGTCCTCATCTCAGGTGGGCGATGCCTCCTGTGCCGGACTC
TATGCGCGGATCATTTGGCCTGCCGAGGGGTGTAGGCGTTTCCCGAGGCA
GCGGCGGCGGGGTAAGCCAATCTCCACGTCTACTGTACGGGCCAATCTTT
TGCAGACAGCCAGATTCAAACGTCTTCAGCGTTTCGTCCGCTAGTGTTAG
CAGCCGTGCCGTCTCTCGCCTAGCCTCTCGTTGGGGCCTGACCGCGATTG
GTCCTATATTTTTTTTAACAACGGACCCGCTTTCAGGTGACCCAAAACAA
CCGATAGAATTTTTTGTCGCGCGCATCTCTCCTACCATTGCTACCCTTCC
GTACACTCAAGAGCGACCCACGCTTCGATTCGGCTTTTCCCTCTACCCGT
GTTGGATACGTATGTTCACGGCGCTTATGTTTTTTTTTCCGTGACCCTTG
ACGAATTTCTTTTCCAGACACACTGGACGACGCCCCCCTCGCCCCTTGGC
GGCGGCAGGGGAAACAGCAGCGGCGGCGGCGGCGGCGGTAGCGGTGCCTA
CTCCACCCTGTTCAACGCCTCCAGCCTAGCAAACCCGCCGCGGAGCCCTT
ACTCGACGAATCAACCAGCCGACTCCAACGGTGGCGGCGACAGCGGAAAA
GGTGCGGCGGAAAGGGCCTCCACCCCGACATCTTCTTCCGCGCAGGCCGC
AGACGCGTCGGTACCTGCGGTTGTCACAGCTGCTACTACAGCCGCCAGCG
CTGCCGCTGCTGCCGCCGCTGCCAGGGGCAATAAATACCCCGCTCACCTA
AGCGGCGCACGGTACCCGATGCCGCCGCCGGGGTATTATCTCGGCCCCGG
TGCCGCAGGCAGCGGCGCAGGCGGTGGTGGTGGCAGCGGCAGCAGCAGCA
GCGGCGGCGGCAGGGTGGACGATGGTGCCGCGCCCTGCCATTCCCCCCCC
CCTCTAGGCGTCGGCGGCGGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15073:1477..2898+ >mRNA_E-fasciculatus_F_contig15073.3598.1 ID=mRNA_E-fasciculatus_F_contig15073.3598.1|Name=mRNA_E-fasciculatus_F_contig15073.3598.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15073:1477..2898+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCTGCCGAGGCTGCCGCCGCCGCTCCGTCCGCGATAGGCCTTGAGCC
GGGAGATGGTGACCAGCACGGGTATGACAAGCCGCTGCCGAGGCTGCCGC
CGCCGCTCCGTCCGCGATAGGCCTTGAGCCGGGAGATGGTGACCAGCACG
GGTATGACAAGTGGGCGATGCCTCCTGTGCCGGACTCTATGCGCGGATCA
TTTGGCCTGCCGAGGGGTGTAGGCGTTTCCCGAGGCAGCGGCGGCGGGGT
GGGCGATGCCTCCTGTGCCGGACTCTATGCGCGGATCATTTGGCCTGCCG
AGGGGTGTAGGCGTTTCCCGAGGCAGCGGCGGCGGGACACACTGGACGAC
GCCCCCCTCGCCCCTTGGCGGCGGCAGGGGAAACAGCAGCGGCGGCGGCG
GCGGCGGTAGCGGTGCCTACTCCACCCTGTTCAACGCCTCCAGCCTAGCA
AACCCGCCGCGGAGCCCTTACTCGACGAATCAACCAGCCGACTCCAACGG
TGGCGGCGACAGCGGAAAAGGTGCGGCGGAAAGGGCCTCCACCCCGACAT
CTTCTTCCGCGCAGGCCGCAGACGCGTCGGTACCTGCGGTTGTCACAGCT
GCTACTACAGCCGCCAGCGCTGCCGCTGCTGCCGCCGCTGCCAGGGGCAA
TAAATACCCCGCTCACCTAAGCGGCGCACGGTACCCGATGCCGCCGCCGG
GGTATTATCTCGGCCCCGGTGCCGCAGGCAGCGGCGCAGGCGGTGGTGGT
GGCAGCGGCAGCAGCAGCAGCGGCGGCGGCAGGGTGGACGATGGTGCCGC
GCCCTGCCATTCCCCCCCCCCTCTAGGCGTCGGCGGCGGTACACACTGGA
CGACGCCCCCCTCGCCCCTTGGCGGCGGCAGGGGAAACAGCAGCGGCGGC
GGCGGCGGCGGTAGCGGTGCCTACTCCACCCTGTTCAACGCCTCCAGCCT
AGCAAACCCGCCGCGGAGCCCTTACTCGACGAATCAACCAGCCGACTCCA
ACGGTGGCGGCGACAGCGGAAAAGGTGCGGCGGAAAGGGCCTCCACCCCG
ACATCTTCTTCCGCGCAGGCCGCAGACGCGTCGGTACCTGCGGTTGTCAC
AGCTGCTACTACAGCCGCCAGCGCTGCCGCTGCTGCCGCCGCTGCCAGGG
GCAATAAATACCCCGCTCACCTAAGCGGCGCACGGTACCCGATGCCGCCG
CCGGGGTATTATCTCGGCCCCGGTGCCGCAGGCAGCGGCGCAGGCGGTGG
TGGTGGCAGCGGCAGCAGCAGCAGCGGCGGCGGCAGGGTGGACGATGGTG
CCGCGCCCTGCCATTCCCCCCCCCCTCTAGGCGTCGGCGGCGGT back to top
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