mRNA_E-fasciculatus_F_contig1507.3594.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1507.3594.1
Unique NamemRNA_E-fasciculatus_F_contig1507.3594.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1507.3594.1 vs. uniprot
Match: D7FLR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR8_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.420e-57
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 1 
Query:  433 AMDGDKSGEHYDNFDDEDKEEEYAYNDGTCDDRSCTFCCGRENGQSNYSTSCRLDGDEEERRGGPGVSWGGASSSVGTASTGTMSWYTQDRSHYQESQVVSEGKEQEEEVAGEGRRWRGEGEYDDNDVEMARRLLCAALGS 855
            AM+GD+SG+H +NFDDE+         GTC DR CTFC GRE+GQ NYSTSC+LDGDE++R GGPG S GG SSSV TASTGTMSWYTQ+R +YQE QV+SEG+EQEEEV  EG   RGEGEYDDNDVEMARRLLCAALGS
Sbjct:    6 AMNGDRSGDHCENFDDENNXXXXXXX-GTCGDRYCTFCSGREHGQRNYSTSCQLDGDEDDR-GGPGASLGGVSSSVCTASTGTMSWYTQNRGYYQEGQVLSEGEEQEEEVVREGGLGRGEGEYDDNDVEMARRLLCAALGS 144
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1507.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLR8_ECTSI3.420e-5772.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1507contigE-fasciculatus_F_contig1507:12263..15869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size858
Cds size858
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1507.3594.1prot_E-fasciculatus_F_contig1507.3594.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1507 12263..15869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.2153916-CDS-E-fasciculatus_F_contig1507:12262..123541622927986.2153916-CDS-E-fasciculatus_F_contig1507:12262..12354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 12263..12354 +
1695995779.0765457-CDS-E-fasciculatus_F_contig1507:12262..123541695995779.0765457-CDS-E-fasciculatus_F_contig1507:12262..12354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 12263..12354 +
1622927986.2263896-CDS-E-fasciculatus_F_contig1507:13754..142491622927986.2263896-CDS-E-fasciculatus_F_contig1507:13754..14249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 13755..14249 +
1695995779.0878253-CDS-E-fasciculatus_F_contig1507:13754..142491695995779.0878253-CDS-E-fasciculatus_F_contig1507:13754..14249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 13755..14249 +
1622927986.2368402-CDS-E-fasciculatus_F_contig1507:14584..147021622927986.2368402-CDS-E-fasciculatus_F_contig1507:14584..14702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 14585..14702 +
1695995779.100588-CDS-E-fasciculatus_F_contig1507:14584..147021695995779.100588-CDS-E-fasciculatus_F_contig1507:14584..14702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 14585..14702 +
1622927986.2504184-CDS-E-fasciculatus_F_contig1507:15716..158691622927986.2504184-CDS-E-fasciculatus_F_contig1507:15716..15869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 15717..15869 +
1695995779.1103535-CDS-E-fasciculatus_F_contig1507:15716..158691695995779.1103535-CDS-E-fasciculatus_F_contig1507:15716..15869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1507 15717..15869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1507.3594.1

>prot_E-fasciculatus_F_contig1507.3594.1 ID=prot_E-fasciculatus_F_contig1507.3594.1|Name=mRNA_E-fasciculatus_F_contig1507.3594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp
LSAKIEGQATRGSIAIMTWPQDEHYAGKRCVNEQCMARGVAQGHCRVCQC
QQQLEQREYHEEEEERQYQQLLEQQYHSSLSRQHQQQYQHHQQQRGQELL
RRHQQQQQQRQRQEQEQEQELLRRHHQQQQQQQQQQQQQQLMMMAMDGDK
SGEHYDNFDDEDKEEEYAYNDGTCDDRSCTFCCGRENGQSNYSTSCRLDG
DEEERRGGPGVSWGGASSSVGTASTGTMSWYTQDRSHYQESQVVSEGKEQ
EEEVAGEGRRWRGEGEYDDNDVEMARRLLCAALGS*
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mRNA from alignment at E-fasciculatus_F_contig1507:12263..15869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1507.3594.1 ID=mRNA_E-fasciculatus_F_contig1507.3594.1|Name=mRNA_E-fasciculatus_F_contig1507.3594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3607bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1507:12263..15869+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTCTGCCAAGATCGAAGGTCAGGCGACGCGTGGATCCATCGCAATCAT
GACGTGGCCGCAGGACGAACACTATGCGGGTAAAAGGTGCGTGTGCTACG
TCCGTGCACGATTATTTTTGCAGAGCCTGGCTGCCGTTTTGTCCTCCGCG
CAAAAAGCGGCCCACAGCAGTATCTACAGACTACAGACCAGTTCTGAGTT
TTTGAGTGTCAAACGACACCTACCTTTGTAGACAGCAGTATTGTAGATAA
TCTGTGTCAGTGCACGATGTGCTAAATTCTCATGTTCCAAATGCAGCAGC
AGCGCAGCAGCAGCAGACACCATGTTGGCTTCGCGGGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCCTCTCTCTCGCTCTTCTAGCGTACTCGGG
ATGGTGTACTGACGCGGCCAGGGTTGCCCAGTAATCAATGGATGGCATGG
TTCGAAATGTGGGTGCCACATACTGCCGTAGGGCGGACCTATGCTTCACT
TGCTGCATCCCAAAAGAAGAAAAGAAGGGCTTCTTCCGTGTAGGCAGCTA
GAAATGTATCGGACAGACATCGGACATCGGGTCGACCGCGTACAGTAGTA
CCGCCATCACACACCCTAGACTAAGGGTCTGGTTGCCTTCAAATAAACCA
GAGCTCTTTCCCCCCAGTTTTCTCGACTCCGACTTGGATGATAGCTGGCA
TTTTGGCGACACGTCAACGTAGCAGCATGTAGTATTGTAGTGCTGTAGGA
TGCAGCAGTGGGGGTATGTAGTATGTGTTTCCGTGTTGAGGGCACTTGAT
AGACTACACTTGATAGACTACATTTTTACGGATGCAAACACCAGCATCTT
TGGCATTCTGCCAATCCATGGCCAGTCGAAATGTACGCAAGGCTGTTGTT
GTACTACGCATTCAATGCACAGCAGTCACACTGCTGCTGTTGCTATATAT
ACCCGTGCGAAACAAGTAATACATAGACTAACCCTCTTTCGAAGGGACGT
GTAAAAGAGTGACCAAAATAAATTAAACAGCAGTAGTTTTAGTGGGGGAC
TGAGAGCCCGACGCTGGCTGGATGATAATTTACTGAACGAAGTTGAGCCT
GCTTTAGGCCTAGACTACAGTCCACAACGAGAATACAGCAGTGATGATGC
TTCGCAAGTACGTTCATACATGTACCCCGTGCAAGACTTTGTTCTATCTA
TTATGCATATCTGTGAACAGGTGAACCACAGAAAAGGTCCGGAAGGAGCA
ATCCTCCGTTTTTTTCGTGTGCTACAATACGCATGCTTAATAGACGACAC
GTTAGGAGTGGCATAAGGGACGTTGTATGGAGACGCAATGTATGCTGCAA
CAGTTGTTTTTGGCTGTGGGAAGACGACATATAGACTTGTCATTGCCGTC
CTGACGCCGCGGACTATACCGGCAAAGCACTACTCTGTACTGCTGACTCA
AAGTCCACATGCATCGCGCTCTCATCCTTTCTCCAGGTGCAGCAACGAGC
AGTGCATGGCAAGGGGGGTAGCACAAGGGCACTGCCGTGTGTGCCAGTGC
CAGCAGCAGCTCGAGCAGCGAGAGTACCACGAGGAAGAGGAAGAACGGCA
GTACCAGCAACTCCTGGAGCAGCAGTACCACAGCAGCCTATCACGACAGC
ACCAGCAGCAGTACCAGCACCACCAGCAACAGCGGGGGCAGGAGCTGCTA
CGACGCCACCAGCAGCAACAGCAGCAGCGGCAGCGGCAGGAGCAGGAACA
GGAGCAGGAGTTGCTACGACGTCACCACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCTGATGATGATGGCGATGGACGGTGATAAA
AGCGGAGAACACTACGACAACTTCGACGACGAGGACAAGGAAGAGGAATA
CGCATACAACGACGGAACGTGCGACGACCGAAGTTGCACCTTCTGCTGCG
GCAGGGAGAATGGCCAGAGCAACTATAGCACCTCATGGTGAGTGTACGGC
AGAGAGAGAGAGAGGTGGTTTGGATAGTTGCAACAGTTTCAACAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAAGTAGCAAACTATAGCG
GCTCGAGGGAAGGCGGAGGAGGAGGCTAAAGAAACTCATCATGCTCGTAA
ACGTTGCTTCCGTGCTGGAGCCCTTGTAGAGGCTACCTCCCAACCCACAA
CACCACACCACCGATGCATGGTCCAAAACACACACCCTACACCCTCACCC
TTAAGCACCAACTCGACTCCCCTCACACCCCTCCCCCCTCCCCCTCCCGA
AAACGATGGCCACGTTTTTAAGTCGGCTGGACGGAGACGAAGAAGAACGC
AGAGGGGGCCCCGGGGTATCATGGGGCGGCGCGTCTTCCAGCGTGGGCAC
GGCGTCCACGGGTACCATGTCCTGGTACACACAAGATAGAGTGAGTTAAA
TTGTTAGTTGTGTTCGCCATGTGGGTTCTCGGTGGTGCCATAGTGTAATC
AAGTAATCCAGTAGAAGCAAGCCTGGTAGAATACACCAGAAGTAGTACTA
CATGTAGCTCTAGCCTGTCGAAATCGCAAGTAATTCCCGCATCTATTCTT
CTGCGTGACCTGTTGTTGCGTTTGGCTAATAGCCTTGACTCGAGAATCGT
TGCTCACGGCAAACAAATATTAATATTTCCAATACAACCCGAAAAGGGTG
AAAAGGGTGAGAAATTTTCATTTTTTCTCGTCCGTGCGAACTTTCCATCT
CAAAACGCCGCGATCTCTCTGTGTGATGCGGCCGTTGTCTGTTTTTCGTG
TGCCTACCTGTCTATCTATGCCGGCGGGGTGAGTGACTAGCTTGTGCCTT
TGACATCGTCGGTGCCCTTTGGCTGAACCAACGACCCACACGCCTCTCTC
TTTGGCTGCTCGACATGTAGAAACGATGAGGTGTGGACTGATGAGAGATA
GATATGATGGTAGATTGATACTTTCCCCACGGAACATACAATAGACCAGT
TCACCATCAACCTGCCGCAGGTTTGACCACCGATGGCTGCTGCTGCCCCC
TCCATTTCCGTCAATATGCACACGTGCAGCAGAGGTCGCTGGTTTAAGGC
CGCTGTTTCCCCCCAAAAAAAAACAAATGGCCAAGGAAAAAACATCGGCC
TTTAACTAGATATCGGGCACCCTGCACTATTTCGAATATGGGACAACTTG
ACTATTCCAGCATCTGTCCCAAGCGATTTCACCGGCGTTCAACAGGGCAA
CCGGCCCTAAATATGCAGCCTTACACGGGGCCCGCTACTGTAGTAGTAGC
TGTTCCAAGAGTATTGACAAGGACAAGTTCACACGGAAAACGTGGTGGGC
ATGCGTACAGGGGGCGCCCCCCCACTGACTCTTCGNNNNNNNNNNNNNNN
AAAACTGCCCCCCCCCCCCCCACCCAACCCCTGTCGCCCCCTCCTGTCCT
GCAGAGTCACTACCAAGAGAGTCAAGTCGTGAGCGAGGGGAAAGAGCAGG
AGGAGGAGGTAGCTGGGGAGGGTAGGCGATGGCGCGGCGAGGGCGAGTAT
GACGACAACGACGTCGAGATGGCTAGGCGTCTCTTGTGCGCGGCGCTGGG
GTCTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1507:12263..15869+

>mRNA_E-fasciculatus_F_contig1507.3594.1 ID=mRNA_E-fasciculatus_F_contig1507.3594.1|Name=mRNA_E-fasciculatus_F_contig1507.3594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1507:12263..15869+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTCTGCCAAGATCGAAGGTCAGGCGACGCGTGGATCCATCGCAATCAT
GACGTGGCCGCAGGACGAACACTATGCGGGTAAAAGGTGCGTCTTTCTGC
CAAGATCGAAGGTCAGGCGACGCGTGGATCCATCGCAATCATGACGTGGC
CGCAGGACGAACACTATGCGGGTAAAAGGTGCGTCAACGAGCAGTGCATG
GCAAGGGGGGTAGCACAAGGGCACTGCCGTGTGTGCCAGTGCCAGCAGCA
GCTCGAGCAGCGAGAGTACCACGAGGAAGAGGAAGAACGGCAGTACCAGC
AACTCCTGGAGCAGCAGTACCACAGCAGCCTATCACGACAGCACCAGCAG
CAGTACCAGCACCACCAGCAACAGCGGGGGCAGGAGCTGCTACGACGCCA
CCAGCAGCAACAGCAGCAGCGGCAGCGGCAGGAGCAGGAACAGGAGCAGG
AGTTGCTACGACGTCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCTGATGATGATGGCGATGGACGGTGATAAAAGCGGAGA
ACACTACGACAACTTCGACGACGAGGACAAGGAAGAGGAATACGCATACA
ACGACGGAACGTGCGACGACCGAAGTTGCACCTTCTGCTGCGGCAGGGAG
AATGGCCAGAGCAACTATAGCACCTCATGCAACGAGCAGTGCATGGCAAG
GGGGGTAGCACAAGGGCACTGCCGTGTGTGCCAGTGCCAGCAGCAGCTCG
AGCAGCGAGAGTACCACGAGGAAGAGGAAGAACGGCAGTACCAGCAACTC
CTGGAGCAGCAGTACCACAGCAGCCTATCACGACAGCACCAGCAGCAGTA
CCAGCACCACCAGCAACAGCGGGGGCAGGAGCTGCTACGACGCCACCAGC
AGCAACAGCAGCAGCGGCAGCGGCAGGAGCAGGAACAGGAGCAGGAGTTG
CTACGACGTCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCTGATGATGATGGCGATGGACGGTGATAAAAGCGGAGAACACT
ACGACAACTTCGACGACGAGGACAAGGAAGAGGAATACGCATACAACGAC
GGAACGTGCGACGACCGAAGTTGCACCTTCTGCTGCGGCAGGGAGAATGG
CCAGAGCAACTATAGCACCTCATGTCGGCTGGACGGAGACGAAGAAGAAC
GCAGAGGGGGCCCCGGGGTATCATGGGGCGGCGCGTCTTCCAGCGTGGGC
ACGGCGTCCACGGGTACCATGTCCTGGTACACACAAGATAGATCGGCTGG
ACGGAGACGAAGAAGAACGCAGAGGGGGCCCCGGGGTATCATGGGGCGGC
GCGTCTTCCAGCGTGGGCACGGCGTCCACGGGTACCATGTCCTGGTACAC
ACAAGATAGAAGTCACTACCAAGAGAGTCAAGTCGTGAGCGAGGGGAAAG
AGCAGGAGGAGGAGGTAGCTGGGGAGGGTAGGCGATGGCGCGGCGAGGGC
GAGTATGACGACAACGACGTCGAGATGGCTAGGCGTCTCTTGTGCGCGGC
GCTGGGGTCTTAGAGTCACTACCAAGAGAGTCAAGTCGTGAGCGAGGGGA
AAGAGCAGGAGGAGGAGGTAGCTGGGGAGGGTAGGCGATGGCGCGGCGAG
GGCGAGTATGACGACAACGACGTCGAGATGGCTAGGCGTCTCTTGTGCGC
GGCGCTGGGGTCTTAG
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