mRNA_E-fasciculatus_F_contig1502.3560.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1502.3560.1
Unique NamemRNA_E-fasciculatus_F_contig1502.3560.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.400e-75
Identity = 131/232 (56.47%), Postives = 167/232 (71.98%), Query Frame = 3 
Query:   45 MISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVLGAPARQMDERGGSPPSSDRIVSGTGSRNSSNP 740
            M+ VCWAG+N+   +KA+KFLEL +  MLAITNLAIC NLAL++M+HRTL+RV + SS  +++LS+ +SI  A A+ PFW + +++ T F   N+ + +  W+ +S FFLEF+VG CMF IVAWLLLFR  EV ECW++HARIRYYF LT IG  VNLALG+ GTIYVV GREK  L+V+ WT RH+HIALDT VLYGVLG PA    + G   P + R  S   +   SNP
Sbjct:    1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVLGVPAATGHDEG---PDAQRRCSAAAAAPGSNP 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 5.170e-70
Identity = 125/232 (53.88%), Postives = 173/232 (74.57%), Query Frame = 3 
Query:    3 SGLLFQLLVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVLGAPARQMDERGGSPPSSD 698
            +G+++ L  +++  M++VCWAG NLE+LIK +KF+ELAS +MLA+T+LAICVNLALIV +HRTL RV ++SS  ++ L + +S+G  AA+VP W++VI+  T F+ +N  +G    + +S FFLEFIVG CMF IVAWLLLFR KEV ECWR+HARIRYY CLT +G  ++L++GI  T++V+ G ++  L + AW  R++HIALDT VLYGVL    + MDER G+   SD
Sbjct:   10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLRE--KDMDERVGNARPSD 239
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 2.550e-69
Identity = 134/254 (52.76%), Postives = 172/254 (67.72%), Query Frame = 3 
Query:   24 LVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVLGAPARQMDERGGSPPSSDRIVSGTGSRNSSNPASSNG-GFRSISGLT 782
            +++ Q TMISVCW G  LE  IKA+K+LE  S  MLAITNLAIC+NLAL+V +HRTLSRVN++S+  ++ L + +S+  AAASVPFW   +++ T F+  N  +  A W+ +S   LEF+VG CMF IV+WL+ FR + + ECW+LHARIRYYF LT IG AVNLALGISG  YV       +L+ + W  R+ H+ALDTIVLYGVLG   R MDE GGS  S+    SG    +S  P  SN  G +  SGL+
Sbjct:    1 MIMTQGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVLGT--RHMDEGGGSAASTSGTSSGRLPASSGLPRPSNHRGMKKQSGLS 252
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 7.160e-66
Identity = 119/232 (51.29%), Postives = 170/232 (73.28%), Query Frame = 3 
Query:    3 SGLLFQLLVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVLGAPARQMDERGGSPPSSD 698
            SGL++ L  V++  M++VCW  ++L   IKA+KF+E  S  M+AIT+LAICVNLALIV +HRTL+RV ++SS  ++ L + +SIG  + +VP W++V +  T F+ +N  +G+   + +S FFLEF+VG CMF I+AWLLLFR KEV ECWR+ ARIRYYFCLT +G AVN+ +GI  T++V+   ++P L + +W +R++H+ALDT VLYGVL    + MDERGG+  SS+
Sbjct:   59 SGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLRE--KDMDERGGNARSSN 288
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BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.400e-62
Identity = 113/176 (64.20%), Postives = 138/176 (78.41%), Query Frame = 3 
Query:   45 MISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVV-DGREKP 569
            MISVCWAG NL NLIK +KFLELAS  MLA+TNLAICVNLAL+VM+HRTLSRV++LSS  VI+LS+ L++G AAA+VP W ++ILT TYF P ++ +    W  +S F  EFIVG CM AIVAWLLLFR KE+ ECW++H RIRYYF LT I   VNL LGI GT+Y+V +G+ +P
Sbjct:    1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGEGQRRP 176
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.960e-58
Identity = 112/215 (52.09%), Postives = 147/215 (68.37%), Query Frame = 3 
Query:   45 MISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVLGAPARQMDERGGSPP 689
            MISVCWAG NL   IK +KFLEL +  MLAITNLAICVNL+LIVM+ R  S V ++S+  ++ L + LS G AA +VPFW   +L+ T F+ + +++    ++ IS F +EF+VG CMF IV+WLLLFR  E+ ECW +HA +RYYF LT +G   NL LG+ GTIYV+     P LM+ +W  R V IALDTIVL+ VL    + +DER  +PP
Sbjct:    1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLAT--KSVDERAETPP 213
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BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 4.050e-58
Identity = 109/178 (61.24%), Postives = 135/178 (75.84%), Query Frame = 3 
Query:   36 QSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSR-VNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREK 566
            Q+TMISVCW GANL  LIK  KFLELAS  MLA+TNLAIC+NLAL+VM+H      VN+LSS L+I +S+ +SIG AAA+ PFW+ +IL+ T FFP  +++  + W+TIS F+LEF VG CMF IVAWLLLFR  E+ ECW++HARIRYYF LT I   VNL LGI G IY++  RE+
Sbjct:    2 QATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 9.770e-56
Identity = 105/188 (55.85%), Postives = 138/188 (73.40%), Query Frame = 3 
Query:    3 SGLLFQLLVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREK 566
            SGLL QL+ + ++TM+SVCWAG +L  LIK +KF ELA+  MLAITNLAICVNLALIVM+HRTLSRV + S+  +I + + LS+G AA SVPFW  ++++ T F+     + A  W+ ++GFF+EF VG CM  IV WL++FR  E+ + W++HARIRYYF LT I   VNLALGI GTIYVV   ++
Sbjct:   85 SGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGDMKE 272
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BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.790e-55
Identity = 117/232 (50.43%), Postives = 145/232 (62.50%), Query Frame = 3 
Query:    6 GLLFQLLVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMA-----------HRTLSR----------------------------------VNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREK 566
            GLL+QLL+++Q+TMISVCWAGANL  LIK  KFLELAS  MLA TNLAIC+NLAL+VM+           H   S                                   VN+LSS L+I +S+ +SIG AAA+ PFWD +IL+ T FFP  +++  + W+T+S F+LEF VG CMF IVAWLLLFR  E+ ECW+ HARIRYYF LT I   VNL LGI G IY++  RE+
Sbjct:   11 GLLYQLLILMQATMISVCWAGANLIKLIKTFKFLELASVNMLATTNLAICINLALVVMSESINNTSPSAPHGICSLLPLSGTSVCGLLSLVLPTVGDTAQLQSHGDQQPGVNSLSSPLLIMVSLVISIGAAAAAAPFWDFIILSGTGFFPETENQRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 242
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.030e-53
Identity = 100/214 (46.73%), Postives = 141/214 (65.89%), Query Frame = 3 
Query:    3 SGLLFQLLVVIQSTMISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTLSRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAAVWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLTAIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVL 644
            SG L  L ++ +  M+S C+A  NL  LIK I F+ + S  MLA TNL IC+NLALIV +HRT++RV  +SS  V+++ + +S   AAA+VP W++ ++  T+F+  N       ++ +S + +EF+VG CM  IV WL +FR  E+ ECWR H+RIRYYFCLT  G AVNL LGI G  YV   R++P   + +W  R++HI+ DT+VLYG L
Sbjct:    9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGAL 222
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1502.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LNN1_ECTSI2.400e-7556.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTK4_ECTSI5.170e-7053.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8K6_9PHAE2.550e-6952.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK5_ECTSI7.160e-6651.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY2_9PHAE1.400e-6264.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP0_ECTSI3.960e-5852.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNM5_ECTSI4.050e-5861.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNM4_ECTSI9.770e-5655.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZY2_9PHAE6.790e-5550.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWL8_9PHAE2.030e-5346.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1502contigE-fasciculatus_F_contig1502:13094..17222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2856
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1502.3560.1prot_E-fasciculatus_F_contig1502.3560.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1502 15069..17178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.79994-UTR-E-fasciculatus_F_contig1502:13093..150681622927982.79994-UTR-E-fasciculatus_F_contig1502:13093..15068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1502 13094..15068 -
1695995777.6081188-UTR-E-fasciculatus_F_contig1502:13093..150681695995777.6081188-UTR-E-fasciculatus_F_contig1502:13093..15068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1502 13094..15068 -
1622927982.8686857-UTR-E-fasciculatus_F_contig1502:17178..172221622927982.8686857-UTR-E-fasciculatus_F_contig1502:17178..17222Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1502 17179..17222 -
1695995777.6827955-UTR-E-fasciculatus_F_contig1502:17178..172221695995777.6827955-UTR-E-fasciculatus_F_contig1502:17178..17222Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1502 17179..17222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.816789-CDS-E-fasciculatus_F_contig1502:15068..153841622927982.816789-CDS-E-fasciculatus_F_contig1502:15068..15384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 15069..15384 -
1695995777.6210194-CDS-E-fasciculatus_F_contig1502:15068..153841695995777.6210194-CDS-E-fasciculatus_F_contig1502:15068..15384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 15069..15384 -
1622927982.833711-CDS-E-fasciculatus_F_contig1502:16060..162901622927982.833711-CDS-E-fasciculatus_F_contig1502:16060..16290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 16061..16290 -
1695995777.6344912-CDS-E-fasciculatus_F_contig1502:16060..162901695995777.6344912-CDS-E-fasciculatus_F_contig1502:16060..16290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 16061..16290 -
1622927982.8455112-CDS-E-fasciculatus_F_contig1502:16554..167101622927982.8455112-CDS-E-fasciculatus_F_contig1502:16554..16710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 16555..16710 -
1695995777.6516576-CDS-E-fasciculatus_F_contig1502:16554..167101695995777.6516576-CDS-E-fasciculatus_F_contig1502:16554..16710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 16555..16710 -
1622927982.8585927-CDS-E-fasciculatus_F_contig1502:17043..171781622927982.8585927-CDS-E-fasciculatus_F_contig1502:17043..17178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 17044..17178 -
1695995777.6665576-CDS-E-fasciculatus_F_contig1502:17043..171781695995777.6665576-CDS-E-fasciculatus_F_contig1502:17043..17178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1502 17044..17178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1502.3560.1

>prot_E-fasciculatus_F_contig1502.3560.1 ID=prot_E-fasciculatus_F_contig1502.3560.1|Name=mRNA_E-fasciculatus_F_contig1502.3560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=279bp
MISVCWAGANLENLIKAIKFLELASRYMLAITNLAICVNLALIVMAHRTL
SRVNNLSSALVIYLSVGLSIGTAAASVPFWDSVILTATYFFPINKSEGAA
VWMTISGFFLEFIVGTCMFAIVAWLLLFRTKEVMECWRLHARIRYYFCLT
AIGIAVNLALGISGTIYVVDGREKPFLMVIAWTARHVHIALDTIVLYGVL
GAPARQMDERGGSPPSSDRIVSGTGSRNSSNPASSNGGFRSISGLTKRDS
KPRVPNTRRVQGHPKEASTPSRRLYQID*
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mRNA from alignment at E-fasciculatus_F_contig1502:13094..17222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1502.3560.1 ID=mRNA_E-fasciculatus_F_contig1502.3560.1|Name=mRNA_E-fasciculatus_F_contig1502.3560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4129bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1502:13094..17222- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGTGGTCTGCTCTTTCAGCTTCTGGTCGTGATACAGTCGACGATGATA
TCGGTCTGCTGGGCGGGAGCAAACCTCGAGAACCTAATCAAGGCCATCAA
GTTTCTCGAGTTGGCTTCGAGGTACATGTTGGCGATCACCAACCTCGCCA
TCTGTGTCAACCTCGCCCTCATCGTAATGGTGAGCAAGGGCAGCACCTGC
GTACTATTGTTGTTCGCTGCGTGTAACCAACATGGAAATGCCGCACAAAG
ACCGACTGAAAAGCACACGCATTTTTGCCTTTGTGGACAGGTCACCTCCA
TTGTTGTGTATCTGTCATTCTTTCCCCCTGCTTTCATGACTCAGACAGTA
CCACGACCAAACGACCAGTCTTCGCAACATATTGCTGCCGTAATGGACCT
CTGCTCAAGGGTTTCGCCGAACCGCTGACCATGAACATGACCTTTCTTCC
CTCATATCCTTTCGCTGCCTGCGGCCTTTCACCCCTCTTGTCGACCCACC
GAATGAATACAGGCTCATCGAACACTGTCTCGTGTCAACAACCTCAGCTC
GGCCCTCGTGATATATCTGTCCGTCGGACTCTCCATTGGAACCGCTGCCG
CATCCGTGCCATTCTGGGATTCCGTCATACTCACCGCCACCTACTTCTTT
CCGATAAACAAGAGCGAGGTACGGAGACCACTTGTCGCCAACAAGGACCG
CAATAATTGTTTCACTTGCGGTGCCCGATTCATCATCCGTGTGTGTAGCG
CTGGAGGCCCTCTCACCAAAATGTCTCCGTTGGGCCGTACAGCATACATG
TACCCCCTGACTCAACCACTGCTGTTGTTCGTACACAACATGGAATTAAT
TCAGTGTCACATTTGGGGCGGTGGTGTCAGTGTCTCCCGTGCTTTGGGTT
CATTACTCGTGTCTGGCGATGCATGGATGCAGGGAGCCGCCGTATGGATG
ACCATCTCCGGCTTCTTCCTGGAATTCATCGTCGGCACCTGCATGTTTGC
CATCGTGGCCTGGCTACTGCTGTTCCGGACGAAAGAGGTCATGGAGTGCT
GGAGATTGCACGCCCGCATCCGCTATTATTTCTGCCTGACCGCCATCGGC
ATCGCAGTCAACCTGGCTCTTGGCATTTCCGGCACGATCTATGTCGTCGA
TGGACGTGAGAAGTGAGTGTTGGCCATGCAGTATCCACACAACGGGCGGG
GCCTTGCGATACATAGCGTGACCGCCAGCAGCTAGCTGTAGCAGAGGCTT
GGCGCTGTGTCTACCGTTCCAGACGGCAAGAAAATACAAGAAAAAACGAT
GATCATCGGTAAACTCCAAGCTCTTCGGGAATAGCGAATTTTTCGTGCAA
ACCAAGCTAGGCGTTCTGTCACTAAGTTCCACAGCAATTAGATCCATGTT
GCCTTCGATGCTGTGAAGCAGGGCGTCTCACGCCGAAGCCGCGTCTTCTC
AACGGGCTCGAGGTACACTCGAACCGCGAGCGGTCATGTGCAAAGTAGCG
TCCGTCTTGGTGTATTGAAGCAACCTGCCTGTACTCCGCTATCCTGTCGG
TGAATACATGATCCTGTCAGATTAACGCGAATTTCAAGTGCGCGCCCACC
CACCAGCATTTCCGCGTTCTTGTTTGCGTGCACGGTAGGTGTGGCACCGG
AGCGCATCCTCGTCCACCAGTGAACTCGGTAGACATGTTGCACCTCCTGT
ATTCGATGCCCATCATGGAGTGACTGCTTGGTCCACCGGCAACATGCATT
CCCCTTGCGCGCGCCCCTCACCTTCCAACGACCCCAATCCGTTGCCTTGG
GCGCCTCATTCCTCTGCTACCTCTCTTCTGCTGTCAAGACCTTTCCTCAT
GGTGATAGCGTGGACCGCTCGTCATGTTCATATCGCGCTGGATACCATCG
TCCTCTACGGTGTCCTGGGGGCACCGGCGAGACAAATGGATGAGCGCGGC
GGCTCGCCGCCTTCCTCTGACCGCATCGTCTCTGGAACGGGTTCTCGAAA
CTCAAGCAACCCTGCGTCAAGCAACGGTGGCTTTCGGAGCATCAGCGGGT
TGACCAAGCGTGACTCGAAGCCTCGCGTCCCCAACACACGACGGGTACAA
GGCCACCCGAAAGAAGCTTCTACCCCCTCCCGTCGGTTGTATCAGATTGA
TTGATCCCTGGCATGTGTGGTCTCTAAGTTCCTGGCGTGTGATGCGAGCG
GGTGCGTTGTGTTAAGGGTTAGGCTGGGGGCTAAGGAGGATGAATTAAGC
TTCAAGTCGTGCTTTACTCTCGCGGGACGGCTCGCCTGCCCCCGATCGCA
GGGCCATAAGCCCTTGGCTGTTTCTCCCGTTCGAGGGCTTGGCCGAGGAA
TGTCATCGGCGAGTGATGGATTGAGGCGGCAAGGTGTTCGTCACGACGGA
CGTTTAGGGCTGAAAGGTGTGTACATGTAGCGTTCATCGCTGAATGGTGC
ATTGATCTTGGCGTGACGGTTGGTGCTCGAGGGAAACGGGCAAACGTGAC
CGCGTTCTAGATGGGTTCATCGCCTGGTTTCTCGTCCAAATGGCAGGCCG
TACAAGCAAGCCCTAGCTTTACGGTGGCTTGGTGGGCCCGGCGGGGTGCG
ATAGGTCTTGAGGGTGTGCATTTGTTGGGAAGCCATGGTGGTGAAGTCCT
TGGTATCATGGATGGTTGCCCCTGGGGTTGCGATGCTATTGACTCTGGTG
ACGGCTGGGAGGGTGTAGCTCGTACGGCCTGGAATCCCATGAAAAGTACT
TGATCTGTCAAGTCTAACACATTACGGAACCACCAAACACGTAGACGCAG
CCGAGGTGATGGCGAAATTTCGATTCGGGAGGTGTCTGTCATCGCCACCT
GTTGGGGTGGAATGACGCCGGACATGCATCAACACATTTTTGTGTCAGGT
GGGCGAGATGTTCCCCCAACGATTGCGATAGATGACGGCTGCACCATACT
GATGCCATAATGTTTCCTACAGTAGATGCTGGTGAAAATCCCGTAGGGGA
CTCTGCAACATTTAGGCCGCACAGTAGACTACAGAGCTTTATACACCACT
TTGCGCGCTGACTTGCTTGGTTGATACTGTGAACGGCCTTGGGTTTGATT
TCGTACGTTCGACATTTTCTTAGTTCCAGGGCGTGGGGGGAAGTAAGATT
GGTGGAAGTTTCGGCGATGACCCCTTGCTTTCGTTGGCGGTGTCAGGATA
CAGCAATTGGGTCTCCTCTATTTTTCTAGTGATATTAGACGGCAGAGGAG
GCAATTTTTTTTTCCGTTTGTGGTGATGCTGGACGACGCTGTTCTTGTTG
TTGTTGCCGTTTTTGTTGCCGTCTGTTTCGTTTGTCAGTGTTACCTCTGT
TTGGACCTTTCAAGTTGTTTGCCAAGAGTTAAAAGACTTTCTCCAAAACG
ATATTTTCCTACAACATGTATATCTAGGTGTACCTGTTTCGAATTTCGTA
GCTAGCCACATGCACGAGGATAGGAGTAGCCGTTGGTCGACGTGCGCTCA
AGGGAAGGGGTCGAGTACAGACGAACACCGCAGTACCCGCGCGGGAAATA
TATGCCGGAGGTACTAAAGTCATTCATATGCTGCGGTCGGAAATGACGTT
GTAATTATCCGTCAGGGGGCAACGGGAAAGGGAAGGATTGTTAATGTCAC
AAAGTATGCGCAGTCCGCTGGATTTTGCACCGGACCGGTGGTAGGGTGGC
TTGGGTAGAAGTTTAATATTAGACTTTGATGTTGATACAGAAGTAGGTTC
CGTTGTGTGTTTGCTTGTCGAGAAGAACAATCTTGTCGACCCCAGCCGGA
ATAGAAAGGACAGCGATCAGCAACGTGCTCTCGCGGTGCCAAGTTGACGC
GGGTTAACCCTAACCTATTCATTGTAGAAAAGGCACCGATTCTTCGACGT
TCAACCAGGGACATCCAGTAGTGCTTCTTATTGTCCTTGGGGAGCGTAAC
TTGGCTGTATCTGTGTGCGATGGTGCTCATCGTAATCCATTTTAGTTTTT
TAATGCCTAGCTTAGCTCGTTACTGTTTTTGTGAAGCAAAATGTAGTCGC
ATGTCACGCAGGGAGGAGCGGCAGTGGGGTCTGTGAAAAAAAGAGAGCTA
CATGAAAACATTGTGTAATAAAGAATGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1502:13094..17222-

>mRNA_E-fasciculatus_F_contig1502.3560.1 ID=mRNA_E-fasciculatus_F_contig1502.3560.1|Name=mRNA_E-fasciculatus_F_contig1502.3560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1674bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1502:13094..17222- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATATCGGTCTGCTGGGCGGGAGCAAACCTCGAGAACCTAATCAAGGC
CATCAAGTTTCTCGAGTTGGCTTCGAGGTACATGTTGGCGATCACCAACC
TCGCCATCTGTGTCAACCTCGCCCTCATCGTAATGATGATATCGGTCTGC
TGGGCGGGAGCAAACCTCGAGAACCTAATCAAGGCCATCAAGTTTCTCGA
GTTGGCTTCGAGGTACATGTTGGCGATCACCAACCTCGCCATCTGTGTCA
ACCTCGCCCTCATCGTAATGGCTCATCGAACACTGTCTCGTGTCAACAAC
CTCAGCTCGGCCCTCGTGATATATCTGTCCGTCGGACTCTCCATTGGAAC
CGCTGCCGCATCCGTGCCATTCTGGGATTCCGTCATACTCACCGCCACCT
ACTTCTTTCCGATAAACAAGAGCGAGGCTCATCGAACACTGTCTCGTGTC
AACAACCTCAGCTCGGCCCTCGTGATATATCTGTCCGTCGGACTCTCCAT
TGGAACCGCTGCCGCATCCGTGCCATTCTGGGATTCCGTCATACTCACCG
CCACCTACTTCTTTCCGATAAACAAGAGCGAGGGAGCCGCCGTATGGATG
ACCATCTCCGGCTTCTTCCTGGAATTCATCGTCGGCACCTGCATGTTTGC
CATCGTGGCCTGGCTACTGCTGTTCCGGACGAAAGAGGTCATGGAGTGCT
GGAGATTGCACGCCCGCATCCGCTATTATTTCTGCCTGACCGCCATCGGC
ATCGCAGTCAACCTGGCTCTTGGCATTTCCGGCACGATCTATGTCGTCGA
TGGACGTGAGAAGGAGCCGCCGTATGGATGACCATCTCCGGCTTCTTCCT
GGAATTCATCGTCGGCACCTGCATGTTTGCCATCGTGGCCTGGCTACTGC
TGTTCCGGACGAAAGAGGTCATGGAGTGCTGGAGATTGCACGCCCGCATC
CGCTATTATTTCTGCCTGACCGCCATCGGCATCGCAGTCAACCTGGCTCT
TGGCATTTCCGGCACGATCTATGTCGTCGATGGACGTGAGAAACCTTTCC
TCATGGTGATAGCGTGGACCGCTCGTCATGTTCATATCGCGCTGGATACC
ATCGTCCTCTACGGTGTCCTGGGGGCACCGGCGAGACAAATGGATGAGCG
CGGCGGCTCGCCGCCTTCCTCTGACCGCATCGTCTCTGGAACGGGTTCTC
GAAACTCAAGCAACCCTGCGTCAAGCAACGGTGGCTTTCGGAGCATCAGC
GGGTTGACCAAGCGTGACTCGAAGCCTCGCGTCCCCAACACACGACGGGT
ACAAGGCCACCCGAAAGAAGCTTCTACCCCCTCCCGTCGGTTGTATCAGA
TTGATTGAACCTTTCCTCATGGTGATAGCGTGGACCGCTCGTCATGTTCA
TATCGCGCTGGATACCATCGTCCTCTACGGTGTCCTGGGGGCACCGGCGA
GACAAATGGATGAGCGCGGCGGCTCGCCGCCTTCCTCTGACCGCATCGTC
TCTGGAACGGGTTCTCGAAACTCAAGCAACCCTGCGTCAAGCAACGGTGG
CTTTCGGAGCATCAGCGGGTTGACCAAGCGTGACTCGAAGCCTCGCGTCC
CCAACACACGACGGGTACAAGGCCACCCGAAAGAAGCTTCTACCCCCTCC
CGTCGGTTGTATCAGATTGATTGA
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