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Homology
BLAST of mRNA_E-fasciculatus_F_contig1495.3513.1 vs. uniprot
Match: A0A6H5K4V2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4V2_9PHAE) HSP 1 Score: 414 bits (1063), Expect = 2.360e-143 Identity = 226/262 (86.26%), Postives = 239/262 (91.22%), Query Frame = 2
Query: 83 MENIRSTIEQGATVLQSYISSLQVRTDTKFSLLLGALLGLSVVAAMAAFPGKPIDYTGVGIDLPPEMRGEETEK-SKKVDGEGSAGAVDEQKPAGLQQIQGVVDNLSQLRRRKRAKDPSLSAAAGEESLVNTTTESQSKETGNAGDVAGKAEWDASRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSNSGSGGGSPGRDNNDDGVGFSGFLSLAMLLMGVGALWAHLSAYPHGTLSRFLIGVFPREMETLGL 865
MENI S IE GATVLQSY+SSLQVRTDTKFSLLLG LLGLSVV A+A++PGKPIDYTGVGIDLPPEMRGEET +KK+D GS GAVDEQKPAGLQQIQGVVDNLSQLRRRKRAK+ SAAAGEESLVNTTTESQ KETGNA D AG+AEWDA RLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQS+SG GGSP RD+NDDGVGFSGFLSLAMLL+G+ ALWAHLSAYPHGTL RFL+GVFPREMETLGL
Sbjct: 1 MENILSKIEDGATVLQSYVSSLQVRTDTKFSLLLGILLGLSVVVAIASYPGKPIDYTGVGIDLPPEMRGEETVGVAKKLDQAGSVGAVDEQKPAGLQQIQGVVDNLSQLRRRKRAKNTPSSAAAGEESLVNTTTESQIKETGNAEDEAGRAEWDARRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSSSGPAGGSPARDSNDDGVGFSGFLSLAMLLVGMWALWAHLSAYPHGTLCRFLVGVFPREMETLGL 262
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_005550.1 |
| Exons | 6 |
| Model size | 967 |
| Cds size | 789 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1495.3513.1 >prot_E-fasciculatus_F_contig1495.3513.1 ID=prot_E-fasciculatus_F_contig1495.3513.1|Name=mRNA_E-fasciculatus_F_contig1495.3513.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp
MENIRSTIEQGATVLQSYISSLQVRTDTKFSLLLGALLGLSVVAAMAAFP
GKPIDYTGVGIDLPPEMRGEETEKSKKVDGEGSAGAVDEQKPAGLQQIQG
VVDNLSQLRRRKRAKDPSLSAAAGEESLVNTTTESQSKETGNAGDVAGKA
EWDASRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSNSGS
GGGSPGRDNNDDGVGFSGFLSLAMLLMGVGALWAHLSAYPHGTLSRFLIG
VFPREMETLGLG* back to topmRNA from alignment at E-fasciculatus_F_contig1495:6824..9392+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1495.3513.1 ID=mRNA_E-fasciculatus_F_contig1495.3513.1|Name=mRNA_E-fasciculatus_F_contig1495.3513.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2569bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:6824..9392+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCACTCGAAAGGCGGCTGTCACTCACAGCTTCTGCGGAGACTAAGGA
TCCTGGGCAGTTTAGCACAAGCTGGTTACAAAATGGAGGTGAAATGACCA
GAACGTCGTCTCGCGTGTTGTTGTTTTTGGCGCTCTATCTCGCAAGCACG
GGCTGGCTCTCTCCCTCGGGCAGTTTCATGAGTACTCTACAGACTTTGTC
TCCCGCGGTAGTTCACACCCCGTCGATGACAGCGCCTGCGAGATGGTCCT
ACGCAACGTGCCAACCTTCCAGTGCGTGCAAAACATCTTGTCGTGTATCT
TCAGCAGGTTATGTAAACGGTATTGCTGTTCTTTGCGACTCTAACCGACA
CCTCTTTTCTTGTGCTCGCGCAGAATATCCGAAGCACCATCGAGCAAGGG
GCAACGGTCCTTCAGAGCTATATTTCCTCGTTACAAGTCCGCACAGACAC
CAAGTTCTCCCTCCTTCTCGGCGCGTTGCTGGGTTTATCCGTGGTAGCCG
CCATGGCTGCTTTCCCTGGCAAGCCCATCGATTACACCGGAGTTGGTGAG
TCCATGACACGAGGATTTCGCATCGTGTGCAGTCCGTGTCTGATGTGTCC
GAACCACTACCGTAGGAATGCATACAACGAGTTCGCTTGCCAGTCTTCGT
TTACTGTTGCCAATAGGCTTGACGGGCGTAGTGAGGTCCCCACCGGACTC
TACACGGGATGACGAATCATTTAGCGACGACCAACACGACTGCAGGAAAA
AATGTTGCTCATGCAGTAGGTGTATGCATAGATCACCAGCAAGGCGGGAT
GACACGGAACTACATGTAAGAGCAGAGAATTGCACCACCAGCGCAAACGA
CGTACAGCAGCAAGGAGGGCATCCGGCCGGCCGCGATATTTGCCCATATT
GCAATGTTTTTCTACTTCCCGGTACCCGGCCCCCCGCTCTGTTATCCCTA
GGCATCGATTTGCCACCAGAGATGAGAGGGGAGGAGACAGAAAAGTCGAA
GAAAGTTGACGGAGAAGGGTCCGCTGGGGCGGTAGACGAGCAAAAGCCGG
CCGGCTTGCAACAGATCCAGGGAGTGGTAGATAACCTGTCGCAGCTTCGG
AGAAGAAAGAGAGCGAAGGATCCGTCGTTGTCAGCAGCGGCAGGCGAAGA
GTCGCTCGTCAACACCACCACAGAGAGCCAAAGCAAAGAGACTGGGAACG
CCGGGGATGTGGCTGGAAAAGGTGAGGTTGTACACCCCTTGCCAACCATG
GAACGAACCCTCAACGTGCCCTGCGACGAAACGTCTGTTGTCGAGGTACA
CGGGTGGGGAGAGGGCGACACATGTAGGGTGTAGGAGACGTCAACGTGTC
ACACATGTCGTCCTTCAGACCGACGCACAAGAGCGGGCAGGAGACATGGA
GGATCCGTGCTATTGTGCCAATCTTCAATAATAGTAGAGCCGCGGGTGCA
CACAAATTCACTACTGCTGTGTTCACGTGAGAGGTTGTTTTTCTGGATAG
AGGTCGCTGGAAGTCTTTCGTCCATGTGGGAAGTTCGTTGAATACTAACA
TTTACCATCGGTCTTTAGAGGACGTGCTCTTTCCGCTGTGTTTTCTCGCA
TTCCCTTAGCGGAGTGGGACGCCAGCCGACTGGACGAAGACAAACTAGCT
CGAAAGATTGGCTCAAGCAAGGCGGCCAGGATGTTGGGTTTGACGGAGGA
CCAGGTGCGTCAACGCGTTCCCACCTTCTACGCAGCTGCTGTTCGACCGA
TAAATCCCCGGAGGTGTTGCTGGGTGTGGTTGGAATGGCAGGGACAATCC
TCGACCCATGCCCCCCTATACGCCTTTTAAATAGTTGCTCCGGGTTGGCA
TCTGTGTTTATGTAATGACGTCAGGCTAACCCTCATGGAGCCTCTGGCAC
ATCAGCAACATGACGTCTGTCTTGCCTTGTTGCGGTGTACGCATGCCTGG
CGAAGGTTCGCCAAGCTGTTGCGGACGCGAAACAGGAGCTTGAGCAGTCG
AACTCGGGATCAGGCGGTGGGTCCCCCGGGCGAGACAACAACGATGACGG
AGTGGGATTTTCCGGATTCCTCTCCTTGGTGAGGAGGAAGGGGGGTAAAG
ACAGACAGCTCTGTGATGGTCTCCATACGCAGCCATTGGTAGCCGTGTGA
AAGGCGGTGCTTGAAAGAGCGCCGCAGCGATGACTGCGAATTATTTTGTC
TAGACCCCAACGAGGCAGGGTGGCGTTGAGCTGGCTGGCGGTGGAATTAC
AAATGGAATTTGACACCCTTTTTTGCAGCGCATGTGTACCAGGGATTGAC
TGGGTCGGTACCGACGCCATTCTTTTTCATTTGTCCCCGATGTGTTGCAG
GCTATGCTACTGATGGGAGTGGGGGCACTGTGGGCGCACCTCTCGGCATA
CCCTCACGGGACGCTCTCCCGGTTTCTCATTGGAGTCTTCCCCCGCGAGA
TGGAGACCTTGGGGCTTGGGTAGAACCAGCGTCAGACACGAGAGAGAGAG
CGTTGGCCTTACACTCATCTGGGCGGATTCTTTTATAGTGTAAGCTCGCG
GGAGAAAAATGAGTGTGCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1495:6824..9392+ >mRNA_E-fasciculatus_F_contig1495.3513.1 ID=mRNA_E-fasciculatus_F_contig1495.3513.1|Name=mRNA_E-fasciculatus_F_contig1495.3513.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:6824..9392+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGATGGAGAATATCCGAAGCACCATCGAGCAAGGGGCAACGGTCCT
TCAGAGCTATATTTCCTCGTTACAAGTCCGCACAGACACCAAGTTCTCCC
TCCTTCTCGGCGCGTTGCTGGGTTTATCCGTGGTAGCCGCCATGGCTGCT
TTCCCTGGCAAGCCCATCGATTACACCGGAGTTGAATATCCGAAGCACCA
TCGAGCAAGGGGCAACGGTCCTTCAGAGCTATATTTCCTCGTTACAAGTC
CGCACAGACACCAAGTTCTCCCTCCTTCTCGGCGCGTTGCTGGGTTTATC
CGTGGTAGCCGCCATGGCTGCTTTCCCTGGCAAGCCCATCGATTACACCG
GAGTTGGCATCGATTTGCCACCAGAGATGAGAGGGGAGGAGACAGAAAAG
TCGAAGAAAGTTGACGGAGAAGGGTCCGCTGGGGCGGTAGACGAGCAAAA
GCCGGCCGGCTTGCAACAGATCCAGGGAGTGGTAGATAACCTGTCGCAGC
TTCGGAGAAGAAAGAGAGCGAAGGATCCGTCGTTGTCAGCAGCGGCAGGC
GAAGAGTCGCTCGTCAACACCACCACAGAGAGCCAAAGCAAAGAGACTGG
GAACGCCGGGGATGTGGCTGGAAAAGGCATCGATTTGCCACCAGAGATGA
GAGGGGAGGAGACAGAAAAGTCGAAGAAAGTTGACGGAGAAGGGTCCGCT
GGGGCGGTAGACGAGCAAAAGCCGGCCGGCTTGCAACAGATCCAGGGAGT
GGTAGATAACCTGTCGCAGCTTCGGAGAAGAAAGAGAGCGAAGGATCCGT
CGTTGTCAGCAGCGGCAGGCGAAGAGTCGCTCGTCAACACCACCACAGAG
AGCCAAAGCAAAGAGACTGGGAACGCCGGGGATGTGGCTGGAAAAGCGGA
GTGGGACGCCAGCCGACTGGACGAAGACAAACTAGCTCGAAAGATTGGCT
CAAGCAAGGCGGCCAGGATGTTGGGTTTGACGGAGGACCAGCGGAGTGGG
ACGCCAGCCGACTGGACGAAGACAAACTAGCTCGAAAGATTGGCTCAAGC
AAGGCGGCCAGGATGTTGGGTTTGACGGAGGACCAGGTTCGCCAAGCTGT
TGCGGACGCGAAACAGGAGCTTGAGCAGTCGAACTCGGGATCAGGCGGTG
GGTCCCCCGGGCGAGACAACAACGATGACGGAGTGGGATTTTCCGGATTC
CTCTCCTTGGTTCGCCAAGCTGTTGCGGACGCGAAACAGGAGCTTGAGCA
GTCGAACTCGGGATCAGGCGGTGGGTCCCCCGGGCGAGACAACAACGATG
ACGGAGTGGGATTTTCCGGATTCCTCTCCTTGGCTATGCTACTGATGGGA
GTGGGGGCACTGTGGGCGCACCTCTCGGCATACCCTCACGGGACGCTCTC
CCGGTTTCTCATTGGAGTCTTCCCCCGCGAGATGGAGACCTTGGGGCTTG
GGTAGGCTATGCTACTGATGGGAGTGGGGGCACTGTGGGCGCACCTCTCG
GCATACCCTCACGGGACGCTCTCCCGGTTTCTCATTGGAGTCTTCCCCCG
CGAGATGGAGACCTTGGGGCTTGGGTAG back to top
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