|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1493.3504.1 vs. uniprot
Match: A0A836CHB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.550e-8 Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 91 INRLTVDKVGTMTTFELRQEAETRGLLEDIPHVNHSTLLQRIVQ---------------------VIVEEEHERGRQGAMKAANSS--------YSDPDKTTEEQDRARQERSERKAAAIERSKQRQANHGYFHAKRVLNV 426
+ R+ + V T+TT++LRQE E RGLL D+ VN++TLLQR+VQ +VEEE E R+ + S Y+ T Q R R+ER ERK AA++RS RQ++ YF +K NV
Sbjct: 11 VERIDMHNVHTLTTYQLRQEIERRGLLGDLTTVNYNTLLQRLVQESVHDAASLLLCHIHVSTILKALVEEEREAERKETVLLKRLSEVPGIMRCYASRG-TLYVQARLRREREERKQAALQRSIARQSDPAYFASKAQANV 150
BLAST of mRNA_E-fasciculatus_F_contig1493.3504.1 vs. uniprot
Match: A0A6U3ZS16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZS16_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.130e-6 Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 100 LTVDKVGTMTTFELRQEAETRGLLEDI-------PHVNHSTLLQRIVQVIVEEEHERGRQGAMKAANS--------SYSDPDKTTEEQDRARQERSERKAAAIERSKQRQANHGYFHAKRVLN 423
+T+D V +T F+LRQE RG+ +DI +N++ L+ +V +++E+ ER ++ A++ + P + Q R +E++ERK AAIERSK+RQA+ YF A++ N
Sbjct: 22 ITLDNVHALTIFQLRQELTRRGIFDDIFGHEGEKRRINYNNCLEVMVGELLKEKDEREKKHALELEEKMRLGKPLDGATTPLEDETLQQRLAREKNERKQAAIERSKKRQADRQYFAARKATN 144
BLAST of mRNA_E-fasciculatus_F_contig1493.3504.1 vs. uniprot
Match: A0A7S2K1Y5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Y5_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 1.750e-5 Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 70 MAGT-CKRINRLTVDKVGTMTTFELRQEAETRGLLEDIPHV-----NHSTLLQRIVQVIVEEEHERGRQGAMKAANSSYSDPDKTTEEQDRA---RQERSERKAAAIERSKQRQANHGYFHAKRVLNVREQTQRPVQESSPRTDE 477
MAGT + +T++ V ++ F+LRQE RG E +P+V N+ LL R+VQ++ +E+ + + K E +D+ QE+++RKAAA+ERS+ RQAN YF +K NV+ + + + S DE
Sbjct: 1 MAGTESSNLMVITLENVQKLSVFQLRQELIARG--EFLPNVYQGTINYQVLLARMVQILHDEKEAKDEAQSRKLE----------MERKDKILSLEQEKADRKAAALERSRCRQANKAYFESKHKGNVQMKDEEEKRAKSSNLDE 133
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-04_006340.1 |
| Exons | 4 |
| Model size | 613 |
| Cds size | 465 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1493.3504.1 >prot_E-fasciculatus_F_contig1493.3504.1 ID=prot_E-fasciculatus_F_contig1493.3504.1|Name=mRNA_E-fasciculatus_F_contig1493.3504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp
MAGTCKRINRLTVDKVGTMTTFELRQEAETRGLLEDIPHVNHSTLLQRIV QVIVEEEHERGRQGAMKAANSSYSDPDKTTEEQDRARQERSERKAAAIER SKQRQANHGYFHAKRVLNVREQTQRPVQESSPRTDEDQDGASSINPRRHK IFVR* back to topmRNA from alignment at E-fasciculatus_F_contig1493:11361..16735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1493.3504.1 ID=mRNA_E-fasciculatus_F_contig1493.3504.1|Name=mRNA_E-fasciculatus_F_contig1493.3504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5375bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1493:11361..16735- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CGATAGCACTCTTGGTCTCTCTGCTCCTTTTACTCTGCTGGCTACAGTAT
TCTGAGCACTATCAGTAGCATGGCTGGCACTTGCAAGAGGATAAATCGTC
TTACGGTGGACAAAGTTGGTACAATGACAACGTTCGAGCTGAGACAGGAG
GCAGAAACGCGGGGGCTGCTCGAAGATATACCACACGTGAACCATTCCAC
GCTTTTGCAACGAATTGTTCAGGTGCGAGCAGGAGCAAGACGGAGCTAAA
TTTACAGCAGGTAGCAGGCAGCGGAAACATGTGTACGAAGCTGTAGGTAA
AACGTTACCTGATTCAGTGGTTTGGCAAGCCTACATGTAGGTGCCACCCC
CACTACACACTCCCGACGCCGCCAACAGCAATACGTGGCATTTCAGCACA
AACACAGAGAAACTGCATCAAAAGCAGTCAAGATTCACACGCTGCCTTCC
CATTCCCATACGGAAGGGGGTGGCGAATTGTTCGTAATCGCGACATTGAG
ATCGACGAAAACGAGTTTGGTATGTATGATCGTTTCGATTCTTACAGTAC
GCCGAACGAGTGAGACACGGGAGGGAGAGGTATCACAGCACACGAGTGAC
AGAGTCCATACATACATACGCACAATTGCCATCATGAACTCCCTGCAGCA
GCGTGGTGCTGAAGAGTCGGTGCTCGTAGACCTGGGGGGTTGAAGTACAT
GTAGACCCTTTCCCCGTCCTCTGTGTTGTAATTGTCGACTGGACCTGATA
CCATCTCCTTTTTGTAGTTTGCCTGTGACCCACCGGAAGGCGCCCGCGCC
AGGTAGATGGTAAATATTATTTACATGTTGTAGAGGTACTACAGCAGCGA
CGGAACGATGTATGTATGTATGTATGTAGTTACTGCTGTGAGACCAACGC
AACAACAACAACAACAACAACAACAACAACAACAGCACCAAACAATAACC
GGGGGGTGCAGGAAGGATGCGTGGCAGATGGCCTCTGACCACCTTGCGTT
GCCCTCGGCCGTGGGACCCCCGCCGAAAAGTCAGAAAAAAGGAGAACGAA
AAACGCAACCTCGCAAAACGGCGTCGTCGACGTTTAGTGATGAACGTAAT
TTATGAGTGCACAGTACACCAGCGACTGGTTTCCTGTAAGATTCAGTTGT
TGAGGAAGTACACCAACGTACAGAGGTCCGAACCGTTGCGAGGGCAGCTA
AATAGTCGGCTAGTCAAATTGAACTATGTAGGATAGATACCTAGCGGTAA
TACATGGAGGCAGGTTTATTATTGACTCGTTCTCTAGGGTAGGTCGGTGC
GTAGTTTCTGGCTGCTTCTGTGATCGAGGCAGACATAGAACGTGACGTTT
TCTGTGGTGGCCGTCTCAGGAACAACGTGTGATTGCAGTCTGTACCCTAA
AAGTGAACAGTAAGGAGAAGCAAGAGAACACTCTTCGCCTTTTTTAACCC
AAAACTCGTCCAGCTACCCCTCTTCTTGCAGCTCTCTTCCATAAACCAGT
CTTCCCAAAAATTTGTGTAGGATTTGCAATGGAGATCAAATGATGCCTAC
GTGACGAATCCGCATAGACTATTGCACATACACCTGACAGTGTGCCAAGT
AGGGGGAGGGTGGAATTCTTTCGACGATAAGCTAGATATAGGGAAAACAT
CACATGGTTATTGCAAAGCTCCAAAAGCTGTAGTAAGAAGTCTACAAAGC
CAACGGTCAAATCACGTTATTTTACCACCTTTTGGGCAATACCGTAGTTG
TACGTGTTATGACACCATCGGTGATCTTTGTACCCGTCGCGGTTATGGCA
CCTGGGGGGGGGGAGGGACGTACGGTTATGGTTTGCATGTTTTAGCGGTT
AGACCATCGACCACGCGTCCTCGAGAGGACAGAGCATTGTTCCCACAGGA
CCGATCACCGATGGCCAATCGTTCCTTCCTACCTTTGCTTAAGTGGCTGC
AAAATATCTTCCCTGGCCTATCTATCCTATCGGCATCACCTCCCGCCTTT
TCAACCCACTTTCTATGCCCCAGTACAGCTACGATCTTCTCCTGGCTAAT
TCACGCCTCAAAAATCTCCCTGTATCTTCCTTCTACTTCCCCAGCTCAGT
CAGTACAGCTAGTATCCTCTCTCTCTTGTACAACGAACACTCAACAACTA
CATAGACCCGGTCTTCGCACTCGGAGCCGCAATCACATTTGAAGTTGTCG
TCTTCATCGTCTACCTTCCTAAACCCTCGTCTACGTTCTCGAAGGCCAAT
GTCCCTGGTCTTGAATTTGACCATAAGCTATGTCCCTGCATCCATTGGTC
CATGTAGGTTCTCCTTGAACCCTATTCTTCTTTCAGCATTCCGTACGTTG
TACACCTCTAAACCCTCGTTATCCTTGGTTTCTTTGGTTAGTCTATGTTC
TTCTCTCTCAGCAAAAGCAACAGATATCTTCTCCTTGAACCCCTCACCGG
GGTGAACTAAAAAGCAAAACGGCTTGAATAAATTGCATATCCGCACCGGT
ATCGGTGTTATCGAACCCGGTGCGATAGAAGGGTTGGCTGTGTTGTTGTG
GTTTGGGTTCTGATTATCTTTTTTATTTTCAGTGTCGGGAACGCAATATC
AATGACTTCATAGCTGCGTAGGACGTAATGCTACATACTTCCGTGAGGTA
CCGGTACCCTCCCGGGCCACGTTTTGAACTGTATGTTGTAACGAACGTCT
GTGAGGGTACCGGTAGGTGTCAGTTGGGGCGCTAATCGTTCCGTGTATAT
CGTACCGTCGAGGTGCACGTGTAAAAATGGGTCAAGCTTTTTGTTACGGT
AATCGGTACGTCAAATGCACTCAACCAAGCAAGCACACAGCACACACCCC
GCACCTCCAACCGACCAAGCAGGAGAGGAACTCATAAATTGTACTGCCTA
CCGTGCCCTTTGAGGTAGACAAAGTAGGGTATTCGCCGGCACCGGTAAGT
GTTTGTGTCACCGAGGTTGTGTGCGTGCTTCGGTACGGATCCTGTACCGG
GAAGCGCCTGTGTTGGTTTCTTGAGTATCGCACCTATCAGTATCATCGCA
CCGGGTGCCTGCACTCAGCACCGTAGAATGGGCACTGTGCATTATTCCGT
ATGGCACCCGTCGCTGTCATCTCACCGAGGGTGCGTTGGAAAATTTGAAC
AAATTAGTTGTAATTGCAGTATCGGTGTATTGGTGCCCATCGGTGTCATG
GCACCGGGATGCGATGAAAAAGCCCACAGCAATGATTTACAAGACGATCG
CACCCCACTGTCATAACACGCACTCTCGTGGTAACCTCACCCCACAAGTT
GTTGTCAAATTTGCATCTTGTGTTGTGTCTCATGGGTGTATGGGGGATGT
TAGTCTACCAACTTCGAAGGAAGCATGTATGTATCACGTTGGGAAATCGT
GTCTTTATTGGTGAGCGATCCAGAGCTCCCTGATCGACCGAGATGCATTT
AGACCTGCGACACCACAACTATACTCTCGAAGATGAAGTACTCATGTCAC
TGCGTCCCCTTCCCTTTTGGGATTTGAAAGATATCGAATGGGGCTGAATA
CATTTTGTGAGTTTTTGCTGCGAACCAGCATGTGTGCGTGCCATGTCCAC
GGAAAACTTAGATGCCGTTCGAGGCTGCTTCGAAAAAAGCCGGTTTGTGA
GGATCAGATCGCTAGCCAGTGATTTACTGCCTTTTATTACGATGCTCTCG
ATGGATAGTCACCGGCTTCTCGGTCTGATTCAAAGTGTCCTAAAGGGCAG
GCATAGTGTCGAACTACGAAAACAATATCTCCAGTAGTTTCGCTTGCTTG
TCGAAACGTGCACAAACATGGCTAACACCGTACAGCACTTTCGTAGGGAT
GTTGTCGACTGAAGAATGTTTCTCTACTAGAAGAACTCAAAATATGTACG
CACAGAGTCGATTGATTGTCGGCTGCAGTTGATGGCACGCTTTTGGTTGT
AGGCCAAGTACACTCGGAACGATATTTGTTGCAGGTCATCGTCGAGGAGG
AGCACGAGCGAGGGCGACAAGGCGCCATGAAAGCGGCCAACTCTTCGTAC
TCCGACCCGGACAAGACCACCGAAGAGCAAGACAGGTGAGGTCGCCAACC
TCGTTGGCATACATACGTCGAAGGAATGATCGATATCCGAGCAAGAGTAG
CCACGATGAAACAGTGACACATACCCGCCGAGATGGTCATGGGTGCCATC
CGTCGCGAATAGAAAAACGGTGTTGAGTAGCCACACACGATCCGTTCCGT
GCCCGCCCGAGCAGGTTTGACAATCAATCGCGGCTACGGTGATGTATTAC
TACATCGTCTCCTAAAAACCGAAAATTGCTTAATTACTTGAGATTGCATC
GATCGGCGGCAAAATCAAATGTGCATGTGTCACTATTTGAAGGACGGTGT
CTCATCCGAGACGGCTTTTGGTATTTTCCTACAAGTTTCTTCGCAAACGT
GCCTTCATTTAGTTTTGAATCGGGTCAACTTCTCTTCTTACAACCGCTGC
CTCGCTATCTAATAGGGCTACGGGGTGTTACGTGGCTATGTTCTCCTCCT
CACATGTTCACAACGATAAACATCTTGGAGCCAGTGTGTTGATTTCCCTC
CCGTGGGTGTGCCCTCCCCTTCCAAACAAAATCAAGACTGTATCCCACAC
TACATGTAGATACACGTACGCTTCAGACCTCTTCAATTATTCCGAACGTT
CCCAAGTGCGCGACCGACTCGAATCGGTAGCCGGGGCGAGGCCGTCCACT
TTGGGGTTCCAACAACACCTTTCAGTTTTGGATCACACACCACCGTCCAG
GATGTAAACCCCCTTGAGACAACCAAATAAACTCTTTGGGACTGTACGTG
CAGTTCGCGAGTGTTTTGAAACTCACATGCACTATTTTTTATTTCGTCCC
TCCTTTTCAGAGCGCGACAAGAGAGGAGCGAGCGAAAGGCAGCCGCAATA
GAGCGAAGCAAGCAGCGCCAGGCTAACCATGGCTACTTTCATGCGAAGAG
AGTGCTGAACGTGCGAGAACAGGTTCGGCAATATCATTTCCGTTGTGTTT
CATGCAGCTGTTGTGTCGCAGACATCTCGAGCTGAAACACAGTGCCTTCG
TTGGTCGGGTGGTAGACTCAACTCATGAATCGGAAAATCACGCTGAATAG
ACGGTCGAGGGAGGCTTACGTGGTATCACCGCTGTGCGTCTTGGCAGACA
CAACGGCCGGTACAGGAGTCATCGCCCCGAACGGATGAGGATCAGGACGG
GGCATCATCCATCAACCCTCGCCGGCACAAGATCTTTGTTAGATAGGAGT
AAACCCGAAATTTGATTCTCGGAGACCAAAGTATGACCTCTTGGGAGCGA
GGCGCGAGGGATCAAACACTTGGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1493:11361..16735- >mRNA_E-fasciculatus_F_contig1493.3504.1 ID=mRNA_E-fasciculatus_F_contig1493.3504.1|Name=mRNA_E-fasciculatus_F_contig1493.3504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1493:11361..16735- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGCTGGCACTTGCAAGAGGATAAATCGTCTTACGGTGGACAAAGTTGG TACAATGACAACGTTCGAGCTGAGACAGGAGGCAGAAACGCGGGGGCTGC TCGAAGATATACCACACGTGAACCATTCCACGCTTTTGCAACGAATTGTT CAGATGGCTGGCACTTGCAAGAGGATAAATCGTCTTACGGTGGACAAAGT TGGTACAATGACAACGTTCGAGCTGAGACAGGAGGCAGAAACGCGGGGGC TGCTCGAAGATATACCACACGTGAACCATTCCACGCTTTTGCAACGAATT GTTCAGGTCATCGTCGAGGAGGAGCACGAGCGAGGGCGACAAGGCGCCAT GAAAGCGGCCAACTCTTCGTACTCCGACCCGGACAAGACCACCGAAGAGC AAGACAGGTCATCGTCGAGGAGGAGCACGAGCGAGGGCGACAAGGCGCCA TGAAAGCGGCCAACTCTTCGTACTCCGACCCGGACAAGACCACCGAAGAG CAAGACAGAGCGCGACAAGAGAGGAGCGAGCGAAAGGCAGCCGCAATAGA GCGAAGCAAGCAGCGCCAGGCTAACCATGGCTACTTTCATGCGAAGAGAG TGCTGAACGTGCGAGAACAGAGCGCGACAAGAGAGGAGCGAGCGAAAGGC AGCCGCAATAGAGCGAAGCAAGCAGCGCCAGGCTAACCATGGCTACTTTC ATGCGAAGAGAGTGCTGAACGTGCGAGAACAGACACAACGGCCGGTACAG GAGTCATCGCCCCGAACGGATGAGGATCAGGACGGGGCATCATCCATCAA CCCTCGCCGGCACAAGATCTTTGTTAGATAGACACAACGGCCGGTACAGG AGTCATCGCCCCGAACGGATGAGGATCAGGACGGGGCATCATCCATCAAC CCTCGCCGGCACAAGATCTTTGTTAGATAG back to top
|