mRNA_E-fasciculatus_F_contig14921.3500.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14921.3500.1
Unique NamemRNA_E-fasciculatus_F_contig14921.3500.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14921.3500.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.350e-33
Identity = 80/100 (80.00%), Postives = 83/100 (83.00%), Query Frame = -1 
Query:    1 PVAAPTLLRQQRRARFPSRERAVLLDFVPAATMPLARDSSAAHAHASGTESSAPSTPIGGGRGGRYRXXXXXXXSRRLDSFRPVRAASGLQNLLRHGDSG 300
            P AAPTLLR  RRARFPSRER+VLLDFVPAA MPLARD S  HAHASGTESSAPSTPIGG  GGR+R       SRRLDSFRPVRAASG Q+LLRHGDSG
Sbjct:  800 PAAAPTLLRNHRRARFPSRERSVLLDFVPAA-MPLARDPSE-HAHASGTESSAPSTPIGGD-GGRFRRASSSR-SRRLDSFRPVRAASGFQHLLRHGDSG 895
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14921.3500.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.270e-31
Identity = 78/96 (81.25%), Postives = 81/96 (84.38%), Query Frame = -1 
Query:    1 PTLLRQQRRARFPSRERAVLLDFVPAATMPLARDSSAAHAHASGTESSAPSTPIGGGRGGRYRXXXXXXXSRRLDSFRPVRAASGLQNLLRHGDSG 288
            PTLLR+ RRARFPSRERAVLLDFVPAA MPLARD SA  AHASGTESSAPSTPIGG  GGR+R       SRRLDSFRPVRAASG Q+LLRHGDSG
Sbjct:  309 PTLLRKHRRARFPSRERAVLLDFVPAA-MPLARDPSA-QAHASGTESSAPSTPIGGD-GGRFRRASSSS-SRRLDSFRPVRAASGFQHLLRHGDSG 400
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14921.3500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE4.350e-3380.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI3.270e-3181.25Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14921contigE-fasciculatus_F_contig14921:686..987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.817112-CDS-E-fasciculatus_F_contig14921:685..9851622927972.817112-CDS-E-fasciculatus_F_contig14921:685..985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 686..985 +
1695995773.605565-CDS-E-fasciculatus_F_contig14921:685..9851695995773.605565-CDS-E-fasciculatus_F_contig14921:685..985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 686..985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14921.3500.1prot_E-fasciculatus_F_contig14921.3500.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14921 686..985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14921.3500.1

>prot_E-fasciculatus_F_contig14921.3500.1 ID=prot_E-fasciculatus_F_contig14921.3500.1|Name=mRNA_E-fasciculatus_F_contig14921.3500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
AAVPVPKEVLETRGRPHRAEAVQPTRAAAAARAAVAPPPAAADRGRRSRR
LRPRRVRVRRRRIASERHRRRRDEVEEDGPLAAGEARAPLLPQQRRRRHR
back to top

mRNA from alignment at E-fasciculatus_F_contig14921:686..987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14921.3500.1 ID=mRNA_E-fasciculatus_F_contig14921.3500.1|Name=mRNA_E-fasciculatus_F_contig14921.3500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14921:686..987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCTGTCCCCGTGCCGAAGGAGGTTCTGGAGACCCGAGGCCGCCCTCA
CCGGGCGGAAGCTGTCCAGCCGACGAGAGCTGCTGCTGCTGCTCGCGCGG
CGGTAGCGCCCCCCCCTGCCGCCGCCGATCGGGGTCGACGGAGCCGAAGA
CTCCGTCCCCGACGCGTGCGCGTGCGCCGCCGAAGAATCGCGAGCGAGAG
GCATCGTCGCCGCCGGGACGAAGTCGAGGAGGACGGCCCGCTCGCGGCTG
GGGAAGCGCGCGCGCCTCTGCTGCCGCAGCAGCGTCGGCGCCGCCACCGG
TG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14921:686..987+

>mRNA_E-fasciculatus_F_contig14921.3500.1 ID=mRNA_E-fasciculatus_F_contig14921.3500.1|Name=mRNA_E-fasciculatus_F_contig14921.3500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14921:686..987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCTGTCCCCGTGCCGAAGGAGGTTCTGGAGACCCGAGGCCGCCCTCA
CCGGGCGGAAGCTGTCCAGCCGACGAGAGCTGCTGCTGCTGCTCGCGCGG
CGGTAGCGCCCCCCCCTGCCGCCGCCGATCGGGGTCGACGGAGCCGAAGA
CTCCGTCCCCGACGCGTGCGCGTGCGCCGCCGAAGAATCGCGAGCGAGAG
GCATCGTCGCCGCCGGGACGAAGTCGAGGAGGACGGCCCGCTCGCGGCTG
GGGAAGCGCGCGCGCCTCTGCTGCCGCAGCAGCGTCGGCGCCGCCACCGG
GCCGCTGTCCCCGTGCCGAAGGAGGTTCTGGAGACCCGAGGCCGCCCTCA
CCGGGCGGAAGCTGTCCAGCCGACGAGAGCTGCTGCTGCTGCTCGCGCGG
CGGTAGCGCCCCCCCCTGCCGCCGCCGATCGGGGTCGACGGAGCCGAAGA
CTCCGTCCCCGACGCGTGCGCGTGCGCCGCCGAAGAATCGCGAGCGAGAG
GCATCGTCGCCGCCGGGACGAAGTCGAGGAGGACGGCCCGCTCGCGGCTG
GGGAAGCGCGCGCGCCTCTGCTGCCGCAGCAGCGTCGGCGCCGCCACCGG
back to top