mRNA_E-fasciculatus_F_contig14912.3494.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14912.3494.1
Unique NamemRNA_E-fasciculatus_F_contig14912.3494.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 9.370e-81
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1 
Query:    1 REKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            +EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILK  IVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK
Sbjct:  892 KEKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILK-EIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 1027
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 7.180e-79
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 1 
Query:    1 REKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKAS--IVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNL 408
            +EKSEIHLFCATAVKRLQDQDAQLPQVL LKEMLSRG+GVHHGGLLPILKAS  IVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPL+ L
Sbjct:  756 KEKSEIHLFCATAVKRLQDQDAQLPQVLKLKEMLSRGVGVHHGGLLPILKASSEIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLMML 893
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A485LFX7_9STRA (Aste57867_20819 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFX7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.610e-62
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIH+FCA ++ RLQ  D QLPQVL +++ML RGIGVHHGGLLPILK  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNGTRKHDGK FRDLLPGEYTQMAGRAGRRGLD +GTVII CW E P    L+
Sbjct:  681 ERSEIHVFCAASISRLQGSDQQLPQVLQVRDMLLRGIGVHHGGLLPILK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGTRKHDGKTFRDLLPGEYTQMAGRAGRRGLDAIGTVIIACWGEVPDSTGLR 815
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: H3GLZ7_PHYRM (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GLZ7_PHYRM)

HSP 1 Score: 216 bits (549), Expect = 6.400e-62
Identity = 106/136 (77.94%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIHLF  T+V+RLQ  D +LPQVL +KEML RGIGVHHGGLLPI+K  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNGTRKHDGK+FRDLLPGEYTQMAGRAGRRGLD VGTVII CW++ P   +L+
Sbjct:  636 ERSEIHLFLETSVQRLQGSDRELPQVLMMKEMLKRGIGVHHGGLLPIIK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGTRKHDGKNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLR 770
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A4D9CSQ0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSQ0_9STRA)

HSP 1 Score: 214 bits (546), Expect = 8.930e-62
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    1 REKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNL 408
            +EKS++H+F ++A+KRLQ +D  LPQV+ + ++  RGIGVHHGGLLP+LK  IVEI FSRGL+K+LFATETFAMGVNMPARTVVFN  RKHDG+DFRDL PGEYTQMAGRAGRRGLDKVGTVIITCW E PPL  L
Sbjct:  254 KEKSQVHIFTSSAIKRLQAKDQDLPQVIRVLDLCKRGIGVHHGGLLPLLK-EIVEILFSRGLIKILFATETFAMGVNMPARTVVFNALRKHDGRDFRDLYPGEYTQMAGRAGRRGLDKVGTVIITCWKEVPPLPTL 388
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A024T8M6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8M6_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.180e-61
Identity = 103/136 (75.74%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIH+FCA +++RLQ  D +LPQVL +++ML RGIGVHHGGLLPILK  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNGTRKHDGK FRDLLPGEYTQMAGRAGRRGLD +GTVII CW + P   +L+
Sbjct:  678 ERSEIHVFCAASIRRLQGSDQKLPQVLQVRDMLVRGIGVHHGGLLPILK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGTRKHDGKTFRDLLPGEYTQMAGRAGRRGLDAIGTVIIACWGDVPDATSLR 812
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A662WV88_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV88_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.640e-61
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIHLF  T+++RLQ  D +LPQVL +KEML RGIGVHHGGLLPILK  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNG RKHDGK+FRDLLPGEYTQMAGRAGRRGLD VGTVII CW++ P   +L+
Sbjct:  750 ERSEIHLFVETSIQRLQGSDRELPQVLTMKEMLKRGIGVHHGGLLPILK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDGKNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLR 884
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A3R7NEF4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NEF4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.220e-61
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIHLF  T+V+RLQ  D +LPQVL +KEML RGIGVHHGGLLPI+K  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNG RKHDGK+FRDLLPGEYTQMAGRAGRRGLD VGTVII CW++ P   +L+
Sbjct:  657 ERSEIHLFLETSVQRLQGSDRELPQVLTMKEMLKRGIGVHHGGLLPIIK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDGKNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLR 791
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A225WSS8_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSS8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.230e-61
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIHLF  T+V+RLQ  D +LPQVL +KEML RGIGVHHGGLLPI+K  +VEI F RGLVKVLF+TETFAMGVNMPARTVVFNG RKHDGK+FRDLLPGEYTQMAGRAGRRGLD VGTVII CW++ P   +L+
Sbjct:  703 ERSEIHLFLETSVQRLQGSDRELPQVLTMKEMLKRGIGVHHGGLLPIIK-EMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDGKNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLR 837
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BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Match: A0A067CLG9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLG9_SAPPC)

HSP 1 Score: 214 bits (544), Expect = 2.970e-61
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    4 EKSEIHLFCATAVKRLQDQDAQLPQVLNLKEMLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPARTVVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPPLVNLK 411
            E+SEIHLFC  ++ RLQ  D  LPQVL ++EML RGIGVHHGGLLPILK  +VEI F+RGLVKVLF+TETFAMGVNMPARTVVFNGTRKHDGK FRDLLPGEYTQMAGRAGRRGLD VGTVII CW + P   +L+
Sbjct:  641 ERSEIHLFCNASISRLQGLDQHLPQVLQVREMLLRGIGVHHGGLLPILK-EMVEILFARGLVKVLFSTETFAMGVNMPARTVVFNGTRKHDGKAFRDLLPGEYTQMAGRAGRRGLDTVGTVIIACWGDAPDATSLR 775
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14912.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL2_ECTSI9.370e-8197.81DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP96_9PHAE7.180e-7994.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485LFX7_9STRA4.610e-6277.21Aste57867_20819 protein n=1 Tax=Aphanomyces stella... [more]
H3GLZ7_PHYRM6.400e-6277.94Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A4D9CSQ0_9STRA8.930e-6275.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A024T8M6_9STRA1.180e-6175.74Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A662WV88_9STRA1.640e-6177.21Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3R7NEF4_9STRA2.220e-6177.21Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
A0A225WSS8_9STRA2.230e-6177.21DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora me... [more]
A0A067CLG9_SAPPC2.970e-6177.21Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14912contigE-fasciculatus_F_contig14912:698..2631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D7FJL2
Preferred nameSKIV2L
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size488
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14912.3494.1prot_E-fasciculatus_F_contig14912.3494.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14912 1140..2587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927971.9600747-UTR-E-fasciculatus_F_contig14912:697..7751622927971.9600747-UTR-E-fasciculatus_F_contig14912:697..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 698..775 +
1695995773.1993458-UTR-E-fasciculatus_F_contig14912:697..7751695995773.1993458-UTR-E-fasciculatus_F_contig14912:697..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 698..775 +
1622927971.9755485-UTR-E-fasciculatus_F_contig14912:1121..11391622927971.9755485-UTR-E-fasciculatus_F_contig14912:1121..1139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 1122..1139 +
1695995773.2132564-UTR-E-fasciculatus_F_contig14912:1121..11391695995773.2132564-UTR-E-fasciculatus_F_contig14912:1121..1139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 1122..1139 +
1622927972.0497015-UTR-E-fasciculatus_F_contig14912:2587..26311622927972.0497015-UTR-E-fasciculatus_F_contig14912:2587..2631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 2588..2631 +
1695995773.2544327-UTR-E-fasciculatus_F_contig14912:2587..26311695995773.2544327-UTR-E-fasciculatus_F_contig14912:2587..2631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14912 2588..2631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927971.9955864-CDS-E-fasciculatus_F_contig14912:1139..11991622927971.9955864-CDS-E-fasciculatus_F_contig14912:1139..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 1140..1199 +
1695995773.2269444-CDS-E-fasciculatus_F_contig14912:1139..11991695995773.2269444-CDS-E-fasciculatus_F_contig14912:1139..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 1140..1199 +
1622927972.0159028-CDS-E-fasciculatus_F_contig14912:1616..17501622927972.0159028-CDS-E-fasciculatus_F_contig14912:1616..1750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 1617..1750 +
1695995773.236122-CDS-E-fasciculatus_F_contig14912:1616..17501695995773.236122-CDS-E-fasciculatus_F_contig14912:1616..1750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 1617..1750 +
1622927972.0342655-CDS-E-fasciculatus_F_contig14912:2433..25871622927972.0342655-CDS-E-fasciculatus_F_contig14912:2433..2587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 2434..2587 +
1695995773.245654-CDS-E-fasciculatus_F_contig14912:2433..25871695995773.245654-CDS-E-fasciculatus_F_contig14912:2433..2587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14912 2434..2587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14912.3494.1

>prot_E-fasciculatus_F_contig14912.3494.1 ID=prot_E-fasciculatus_F_contig14912.3494.1|Name=mRNA_E-fasciculatus_F_contig14912.3494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MLSRGIGVHHGGLLPILKASIVEICFSRGLVKVLFATETFAMGVNMPART
VVFNGTRKHDGKDFRDLLPGEYTQMAGRAGRRGLDKVGTVIITCWSEPPP
LVNLKACTPYHLCVR*
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mRNA from alignment at E-fasciculatus_F_contig14912:698..2631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14912.3494.1 ID=mRNA_E-fasciculatus_F_contig14912.3494.1|Name=mRNA_E-fasciculatus_F_contig14912.3494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14912:698..2631+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGAGAAGAGTGAGATACACCTCTTCTGCGCGACGGCCGTGAAACGCTT
GCAAGATCAAGACGCCCAGCTACCTCAGGTGTGGTGTGGAGAAGTGGTGG
GACTTGCGTGCCACCGCACACACACGCAACACGTACTGTTGTTATTTTAC
AGTTTTTACTCACAAGCACCTACTTACTGCTGTTGAGACGCTTGAAGGCA
CTTGGATGGTGCATGAAGTGAGCCGACGTGTATCGTCACTACGTGATGGT
ATAAGCGAACTACGCTATCACTTGCTGTGCGTTGGTTGACCTAGATCCGA
TAGGACTAAATGTGAAGATGCTCTGGTGCACCCGTGGGATATGTGTGAGC
GAGGGTGCTGCGGCTATCTAGATTGCTGCGCCAGGAAGAGGATAAATTCA
CCGTGATGGCCATTCTGTTTGCAGGTGCTCAATCTGAAGGAAATGCTGTC
TCGAGGCATCGGCGTACACCACGGTGGGCTGCTCCCCATCCTCAAGGCAA
GTGTTGTATGTAAACCAAACTCATGCTGCTGATGCATCTACATAGCCTAC
ACCCAAGGCAGTTTTTATGTTTTGCTCTAAATCGTGGGAGCAGACCACTC
AATAATTTTTTCGACTTCAACGTCCTTTCACAGATAGCACAATGCCCTCG
GTGCGGATCCTCTCTATACGGTGCTTTTACTGCCGGTGCAGCAAGCTTTG
ACAGGGTGCATGTTGTCTGGAGCGTTGTTGTTTGCATTGTAACGTGAGTT
TGGGGCATGTTTCGGGTATGTTCCGCCGGCGTTTTGGGTGTGATTTTTTG
CCGATGATATCGTCATTCTGTATTGAGGGCTATTTCACCACATCATACAC
ATCATACCTTCGCGCTCCCCCCCACACACACACCACACACCACACCCCTT
GCTAAAACAACGACAGGAGATTGTGGAGATTTGCTTCAGCCGGGGATTGG
TGAAGGTCTTGTTCGCTACCGAGACGTTTGCCATGGGAGTCAACATGCCC
GCCAGAACCGTCGTGTTCAACGGAACCAGGAAGCACGACGGGAAAGATTT
CAGGTATCTAATCTACCTCATTCATCATCATCACGATGATGGATGGGTGT
ACCTCCTTTGCTGAAGCTGCTTTGCCGAAGTAGAGGGCGGCTTGCCGCCG
GACGCAGCAGCAGGTCTCCGTTGAGGCTGACCGAGCGGCTCGATTGTCCG
ATTTTCAAGGCCGGGCTTTGTTGACTCTGTGGTCGTTCCAGAACGGAGTT
GCTTCGACGCATGATGTGTCAGCTGTTGAACGCACCGATGGAGAGACCTT
GGGAATGGTATCTATCTATCGGCTTTTCTACTTGAGACGGAACGATACAT
ACTGTAGCTGTGATCAGGGAGGACTTGGTCTGGTCGATATTACTATTGTA
TCGAGTAGAGCGTGGAACCGGCGGAGCTGGTCGGAAACGCCGAGGGAGAG
CTGGGATTGAACGCCGTATGCATACAAGATGAGGGTTATCTGGCGGTGAT
GGGTGATGGGTGACGAGTTTCGTGGTGTTATTGATGGTGCTTCCCGACCT
CCCGAAGCGTCCCACATGTGTTCCACTTTAGGTCGTGTTCGTGTGTGTTT
ACCCCCCTGTGTTTTCTTGCTTTTGATCGAACTTCAATACCGTTTCCCTT
TGGTGGGCCGCCCATGATACCAAATTTCCGCACCGCAACGGTACAACAAT
GCAATTTGGAACGTAATGGAATGTGAACGTGGACAGGGACCTCCTTCCGG
GAGAGTACACTCAGATGGCTGGACGAGCCGGTCGAAGAGGTCTGGACAAG
GTCGGGACCGTCATCATCACCTGCTGGAGTGAGCCTCCTCCGCTGGTCAA
CCTTAAGGCATGTACTCCGTATCATTTGTGTGTACGTTAACTACACCGGG
ACGGGCGGCATTACAGCACAGCACTGGAGCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14912:698..2631+

>mRNA_E-fasciculatus_F_contig14912.3494.1 ID=mRNA_E-fasciculatus_F_contig14912.3494.1|Name=mRNA_E-fasciculatus_F_contig14912.3494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14912:698..2631+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGTCTCGAGGCATCGGCGTACACCACGGTGGGCTGCTCCCCATCCT
CAAGGCAAGTATGCTGTCTCGAGGCATCGGCGTACACCACGGTGGGCTGC
TCCCCATCCTCAAGGCAAGTATTGTGGAGATTTGCTTCAGCCGGGGATTG
GTGAAGGTCTTGTTCGCTACCGAGACGTTTGCCATGGGAGTCAACATGCC
CGCCAGAACCGTCGTGTTCAACGGAACCAGGAAGCACGACGGGAAAGATT
TCAGATTGTGGAGATTTGCTTCAGCCGGGGATTGGTGAAGGTCTTGTTCG
CTACCGAGACGTTTGCCATGGGAGTCAACATGCCCGCCAGAACCGTCGTG
TTCAACGGAACCAGGAAGCACGACGGGAAAGATTTCAGGGACCTCCTTCC
GGGAGAGTACACTCAGATGGCTGGACGAGCCGGTCGAAGAGGTCTGGACA
AGGTCGGGACCGTCATCATCACCTGCTGGAGTGAGCCTCCTCCGCTGGTC
AACCTTAAGGCATGTACTCCGTATCATTTGTGTGTACGTTAAGGACCTCC
TTCCGGGAGAGTACACTCAGATGGCTGGACGAGCCGGTCGAAGAGGTCTG
GACAAGGTCGGGACCGTCATCATCACCTGCTGGAGTGAGCCTCCTCCGCT
GGTCAACCTTAAGGCATGTACTCCGTATCATTTGTGTGTACGTTAA
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