mRNA_E-fasciculatus_F_contig14893.3481.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14893.3481.1
Unique NamemRNA_E-fasciculatus_F_contig14893.3481.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A6H5JI18_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI18_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 1.250e-140
Identity = 226/270 (83.70%), Postives = 234/270 (86.67%), Query Frame = 1
Query:   76 NSPRQYPQVNGINLNANNGGSTTNAAISPDGRREDRVGAFLHRRVREILRAGGDGSGGGCGIDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLK-----DGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTRKGSAGSGRVGPDPSLNVGVLRPIDQQ 870
            NSPRQ PQVNGI+ N NNGGST NAAIS D RREDRVGAFLHRRVREILRAGG GS GGC IDE ILG+LVRKQ AVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGF RVVEALAAKISP R+RLQSPV RVQWASQGQQE R+DSPFA+SHPCVVEY   TRR+SSGGI V GE  HS RV T RIRCRRVLVTVGLGVLK     DG AL FSPPLP AK++AIRRLGFGTADKFFVRCTRKGSAGSGR GPD SLNVGVLRPI QQ
Sbjct:  296 NSPRQDPQVNGISQNVNNGGSTPNAAISSDSRREDRVGAFLHRRVREILRAGG-GSSGGCVIDEDILGYLVRKQQAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFFRVVEALAAKISPGRIRLQSPVSRVQWASQGQQE-RRDSPFAESHPCVVEY--TTRRHSSGGIDVGGEQGHSDRVLTMRIRCRRVLVTVGLGVLKNRDVQDGMALTFSPPLPQAKLAAIRRLGFGTADKFFVRCTRKGSAGSGRAGPDASLNVGVLRPIHQQ 561          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: D7G835_ECTSI (Similar to peroxisomal n1-acetyl-spermine/spermidine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G835_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 1.400e-128
Identity = 198/239 (82.85%), Postives = 209/239 (87.45%), Query Frame = 1
Query:   67 TATNSPRQYPQVNGINLNANNGGSTTNAAISPDGRREDRVGAFLHRRVREILRAGGDGSGGGCGIDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVR 783
            T  NSPRQ P V GI+ N NNGGST N  +S D RREDRVGAFLH RVREILRAGG GS GGCGIDE ILG+LVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPER+RLQSPV RVQWASQGQQE R++SPFA+SHPCVVEY   TRR+SSGGI V GE DHS  V T RIRCRRVLVTVGLGVLKDGTAL FSPPLP AK++AIRR+GFGTADKFFVR
Sbjct:  254 TVPNSPRQDPHVKGISDNVNNGGSTPNVVMSADSRREDRVGAFLHLRVREILRAGG-GSSGGCGIDEDILGYLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERIRLQSPVTRVQWASQGQQEERRESPFAESHPCVVEY--TTRRHSSGGIDVGGEQDHSDLVSTMRIRCRRVLVTVGLGVLKDGTALTFSPPLPQAKLAAIRRVGFGTADKFFVR 489          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: UPI0018E4EB4E (peroxisomal N(1)-acetyl-spermine/spermidine oxidase n=2 Tax=Coliadinae TaxID=42450 RepID=UPI0018E4EB4E)

HSP 1 Score: 96.3 bits (238), Expect = 1.510e-18
Identity = 56/186 (30.11%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  271 ILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGI----GVRGEHDHSGRVPTRRIRC--------RRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTR 792
            I   L++++  + GC+ +D + +   G Y EL+GG++ +P G+SR++E L   ISP+++    PV ++ W + G  +   D    DS   V+E    T      G      V  E     R     + C          V+ T+ LGVLKD  +  F P LP  KM +I RL F   DK ++   R
Sbjct:  175 IFDCLLKRETCISGCNSMDEIDLLELGSYTELQGGNILIPSGYSRILEPLTKNISPDKIMSNHPVSKIIWNTNGNSDDFGDE-SEDSDQTVIEDISKTSAPDQTGQLNRPSVESEDKPKKRTHLVEVHCDNGESYYANHVICTIPLGVLKDSASTLFEPSLPQYKMESIERLLFSAVDKIYLEYER 359          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A0L7L6U0_9NEOP (Peroxisomal n1-acetyl-spermine/spermidine oxidase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7L6U0_9NEOP)

HSP 1 Score: 95.1 bits (235), Expect = 3.660e-18
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  271 ILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQD--SPFADSHPCVVEYQYPTRRYSSGGIGVR-GEHDHSGRVPT----------RRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTR 792
            I   L++++  + GC+ +D + +   G Y EL+GG++ +P G+S ++E L   I+P+++    PV ++ W S+G   G +D      DS   V+E    T    + G G    +  H  +  T          ++I    V+ T+ LGVLK+  A  F P LP  K+ +I RL F   DK F+   R
Sbjct:  175 IFDCLLKRETCISGCNSMDEIDLLELGSYNELQGGNIIIPSGYSSILEPLTKNIAPDKILSNHPVSKIVWDSEGHT-GLEDLGEESEDSDQTVIEDISKTSTLENPGEGTSLTDASHKPKKKTNYVTVLCDNGKKINANHVICTIPLGVLKEQAAKLFEPSLPQYKIESIERLLFSAVDKIFLEYER 360          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A4X1V609_PIG (Polyamine oxidase n=9 Tax=Suidae TaxID=9821 RepID=A0A4X1V609_PIG)

HSP 1 Score: 89.0 bits (219), Expect = 4.700e-16
Identity = 60/199 (30.15%), Postives = 91/199 (45.73%), Query Frame = 1
Query:  184 VGAFLHRRVREILRAGGDGSGGGCGIDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFV 780
            VG +L +++RE + +  +G G    +   IL  L   +  V G   +D+V++A +G Y  L G D   PGG+  + + +AA +  + M    PV  ++W    Q+       F    P +VE +        GG                      V+VTV LG LK      F PPLPP K+ AIR++GFGT +K F+
Sbjct:  156 VGEYLKKQIREHVASWAEGEGTKM-LKLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAF----PVLVECE-------DGGC----------------FPAHHVIVTVPLGFLKGHLDTFFEPPLPPEKVEAIRKIGFGTNNKIFL 326          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A026WZG3_OOCBI (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WZG3_OOCBI)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-15
Identity = 61/217 (28.11%), Postives = 98/217 (45.16%), Query Frame = 1
Query:  199 HRRVREILRAGGDGSGGGCGIDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTRKGSAGSGRVGPDPSLNVGV 849
            HRR+R++                 I   L++++  V GCD++D V +   G Y+EL+GG++ +P G+S ++E ++  I  +R+  +  V +++W    Q++    +P A+S   +       +     G  +  EH               V+ T+ LGVLK      F P LP  K+ AI RL FGT DK F+   R            P LN GV
Sbjct:  165 HRRIRQL-----------------IFDCLLKRETCVTGCDNMDEVDLLEMGSYDELQGGNISLPNGYSAILEPVSKHIPKDRILTKHVVTKIRW----QEQKHPHNPEAESDSTLNSL---LQVQCDNGKTITAEH---------------VICTLPLGVLKRTAQDLFEPSLPAYKLEAIDRLMFGTVDKIFLEYDR------------PFLNPGV 330          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A0E0N1I5_ORYRU (Amino_oxidase domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0N1I5_ORYRU)

HSP 1 Score: 86.3 bits (212), Expect = 1.770e-15
Identity = 63/209 (30.14%), Postives = 90/209 (43.06%), Query Frame = 1
Query:  193 FLHRRVREILRAGGDGSGGGC--GIDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLK-----------DGTALAFSPPLPPAKMSAIRRLGFGTADKFFV 780
             + ++ R ++ A   G GG     +DE +L   + ++      DDL  + +   G Y +  G  V +PGG+SRVVE LAA + P  +RL   + R++W                                 GG  VR  H   G  P   +    V++TV LGVLK              A+AF PPLPP K  A+ RLGFG  +K F+
Sbjct:    1 MVAKKPRVVVAARSAGGGGKELEEVDEALLAMHINRERTDTSADDLGDLDLTAEGEYRDFPGEHVTIPGGYSRVVERLAAALPPGTVRLGLRLRRLKW---------------------------------GGTPVR-LHFADGAPP---LTADHVILTVSLGVLKASLGNKDTAGVGAAAIAFDPPLPPFKREAVARLGFGVVNKLFM 172          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A8J5RB65_ZIZPA (Amino_oxidase domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RB65_ZIZPA)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-15
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  259 IDEGILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLK------------DGTALAFSPPLPPAKMSAIRRLGFGTADKFFV 780
            ++E +L   + ++      DDL  +++   G Y +  G  V +PGG+SRVVE LAA + P  +RL   + R++W                                 GG  VR  H   G  P   +    V++TV LGVLK             G A+AF PPLPP K  A+ RLGFG  +K F+
Sbjct:  166 VEEALLAMHINRERTDTSADDLGDLNLTAEGEYRDFPGEHVTIPGGYSRVVEQLAAALPPGTVRLGLCLRRLEW---------------------------------GGTPVR-LHFADGAPP---LNADHVILTVSLGVLKASLSMDGSGAGGSGAAIAFEPPLPPFKREAVARLGFGVVNKLFM 314          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A6P3WZE2_DINQU (spermine oxidase isoform X2 n=3 Tax=Ponerini TaxID=141711 RepID=A0A6P3WZE2_DINQU)

HSP 1 Score: 87.0 bits (214), Expect = 2.010e-15
Identity = 60/193 (31.09%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  271 ILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTRKGSAGSGRVGPDPSLNVGV 849
            I   L++++  V GCD +D V +   G Y+EL+GG++ +P G+S ++E +A  +   R+  +  V +++W  Q     ++ S  A S          T    S   G+      +GR     I  + V+ T+ LGVLK      F P LP  K+ AI RL FGT DK F+   R            P LN GV
Sbjct:  172 IFDCLLKRETCVTGCDTMDEVDLLEMGSYDELQGGNISLPDGYSAILEPVAKHVPKNRILTKHAVTKIRWQKQ-----KRSSVSAGS----------TEELESNVDGLVEVQCENGRT----ISAQHVVCTLPLGVLKRTAQDMFEPSLPAHKLEAIDRLMFGTVDKIFLEYDR------------PFLNPGV 333          
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Match: A0A6P3WYW3_DINQU (peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 n=1 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3WYW3_DINQU)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-15
Identity = 60/193 (31.09%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  271 ILGFLVRKQHAVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMRLQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRGEHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRLGFGTADKFFVRCTRKGSAGSGRVGPDPSLNVGV 849
            I   L++++  V GCD +D V +   G Y+EL+GG++ +P G+S ++E +A  +   R+  +  V +++W  Q     ++ S  A S          T    S   G+      +GR     I  + V+ T+ LGVLK      F P LP  K+ AI RL FGT DK F+   R            P LN GV
Sbjct:  192 IFDCLLKRETCVTGCDTMDEVDLLEMGSYDELQGGNISLPDGYSAILEPVAKHVPKNRILTKHAVTKIRWQKQ-----KRSSVSAGS----------TEELESNVDGLVEVQCENGRT----ISAQHVVCTLPLGVLKRTAQDMFEPSLPAHKLEAIDRLMFGTVDKIFLEYDR------------PFLNPGV 353          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14893.3481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI18_9PHAE1.250e-14083.70PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G835_ECTSI1.400e-12882.85Similar to peroxisomal n1-acetyl-spermine/spermidi... [more]
UPI0018E4EB4E1.510e-1830.11peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
A0A0L7L6U0_9NEOP3.660e-1829.95Peroxisomal n1-acetyl-spermine/spermidine oxidase ... [more]
A0A4X1V609_PIG4.700e-1630.15Polyamine oxidase n=9 Tax=Suidae TaxID=9821 RepID=... [more]
A0A026WZG3_OOCBI1.470e-1528.11Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
A0A0E0N1I5_ORYRU1.770e-1530.14Amino_oxidase domain-containing protein n=1 Tax=Or... [more]
A0A8J5RB65_ZIZPA1.880e-1531.18Amino_oxidase domain-containing protein n=1 Tax=Zi... [more]
A0A6P3WZE2_DINQU2.010e-1531.09spermine oxidase isoform X2 n=3 Tax=Ponerini TaxID... [more]
A0A6P3WYW3_DINQU2.080e-1531.09peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14893contigE-fasciculatus_F_contig14893:19..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue8.4e-104
Seed eggNOG ortholog2880.D7G835
EggNOG free text desc.positive regulation of spermidine biosynthetic process
EggNOG OGsKOG0685@1,KOG0685@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size921
Cds size921
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14893.3481.1prot_E-fasciculatus_F_contig14893.3481.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14893 19..3179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927970.1900852-CDS-E-fasciculatus_F_contig14893:18..4471622927970.1900852-CDS-E-fasciculatus_F_contig14893:18..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 19..447 +
1695995772.2518997-CDS-E-fasciculatus_F_contig14893:18..4471695995772.2518997-CDS-E-fasciculatus_F_contig14893:18..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 19..447 +
1622927970.2027888-CDS-E-fasciculatus_F_contig14893:1481..17361622927970.2027888-CDS-E-fasciculatus_F_contig14893:1481..1736Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 1482..1736 +
1695995772.2683096-CDS-E-fasciculatus_F_contig14893:1481..17361695995772.2683096-CDS-E-fasciculatus_F_contig14893:1481..1736Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 1482..1736 +
1622927970.2140517-CDS-E-fasciculatus_F_contig14893:2669..27671622927970.2140517-CDS-E-fasciculatus_F_contig14893:2669..2767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 2670..2767 +
1695995772.2795944-CDS-E-fasciculatus_F_contig14893:2669..27671695995772.2795944-CDS-E-fasciculatus_F_contig14893:2669..2767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 2670..2767 +
1622927970.2250342-CDS-E-fasciculatus_F_contig14893:3040..31791622927970.2250342-CDS-E-fasciculatus_F_contig14893:3040..3179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 3041..3179 +
1695995772.2956502-CDS-E-fasciculatus_F_contig14893:3040..31791695995772.2956502-CDS-E-fasciculatus_F_contig14893:3040..3179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14893 3041..3179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14893.3481.1

>prot_E-fasciculatus_F_contig14893.3481.1 ID=prot_E-fasciculatus_F_contig14893.3481.1|Name=mRNA_E-fasciculatus_F_contig14893.3481.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=307bp
QQQQQQQQQHLAPKRLEAAATTTATNSPRQYPQVNGINLNANNGGSTTNA
AISPDGRREDRVGAFLHRRVREILRAGGDGSGGGCGIDEGILGFLVRKQH
AVEGCDDLDVVSVAGYGMYEELEGGDVRVPGGFSRVVEALAAKISPERMR
LQSPVMRVQWASQGQQEGRQDSPFADSHPCVVEYQYPTRRYSSGGIGVRG
EHDHSGRVPTRRIRCRRVLVTVGLGVLKDGTALAFSPPLPPAKMSAIRRL
GFGTADKFFVRCTRKGSAGSGRVGPDPSLNVGVLRPIDQQKQQQQQQQQQ
GGRDRGN
back to top

mRNA from alignment at E-fasciculatus_F_contig14893:19..3179+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14893.3481.1 ID=mRNA_E-fasciculatus_F_contig14893.3481.1|Name=mRNA_E-fasciculatus_F_contig14893.3481.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3161bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14893:19..3179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTTGCCCCCAAAAGGTTGGA GGCAGCAGCAACGACAACGGCAACGAATAGCCCCCGACAATACCCCCAAG TGAACGGCATCAACCTCAACGCCAACAACGGCGGCAGCACCACCAACGCT GCCATCAGCCCCGACGGCAGGCGGGAAGACCGGGTCGGCGCATTTTTGCA TCGGAGAGTGCGCGAGATCCTTCGCGCGGGCGGCGATGGCAGCGGTGGCG GCTGCGGCATCGACGAAGGCATTTTGGGGTTCCTGGTGAGAAAGCAGCAC GCTGTGGAGGGCTGCGATGACCTGGACGTCGTGTCCGTCGCAGGGTACGG CATGTACGAGGAGCTCGAGGGCGGGGACGTTAGGGTCCCCGGCGGGTTTT CCAGGGTGGTGGAGGCTTTGGCGGCGAAGGTGGGTTTGGTGTCACAGCAC AGGCTGGACTGGGACCGCTTAGCAGTGTTCCGGAGCCCTAGCCCTAACCC AAGTTCGGCACGATAACAGTCTTGTGTCAAATGGGAGACGGCAGAGAGGC GAGGACCGGCGGGACTGTGTAACATGCCACCCTCGTGGTTTTCCCACCAG GCTGGTGGACGCTTTGGCGGCGAAGGCGGGTAATACATAGTGCTCGTGTT ACAGCACAGCTGGACTGTGACCGCTAGCGATGTTCCCTTAACCCTCTCCA AAGGTAGGCACTACAATATTGATCGTGTGACGGCAGGCCTGGCCCGTGAT AACTTTACCGGTGTTTGGCTTACCAAGAGGTCGCCGCCACATACTGCTGT ATGTAGCGTGCACACAGGAAGAAAACCTTCGTCCAAACGTCCTTATCCCT CGAAGAATCCATCTTAGGCTTTGTGTTGATGCAAAAACAAACGAAAGTAC ATCTCTGCCCGTAACCGCATATCGAGGGTGAGATCCACCTTTGCCGTTAT TGTTCCTACCGTCTGTCTTGGAGTCTGCACGTTGACACATGGCTTGTAGA AGCCAAAGTTGGTGTCCCATTGAGTGTTGACAAGTCACCTTGAAATCTGA AGGACGCATGTCGTAGGACTCTAGACCCTCGTGGCTGGAGCACAGTTCCA TGAGGAGTTGGAGAGATATTCCGCCTCTCTTGCTCCTTAGCTGAGTGCCT GAAGTTCACTCTCACTGCTGTCGTACGCGAGAACGGCTTACCTTTCTTGT TGACCTGGCTCTCCTTGATGTGGTACTTTTCCCGGAAATATGTGGAGGAC CCAGAGACGCCAAGTTCCTGAAAAACCAGCAACAAACGGCACAAAGCTTT GCGAAAACAGCGTGTCGCTACCAGTCGCATGCGGTATGTACCTCATTTGG CGGCGATATGTATCATTTTCGTTGAACCTCTGAGGCTGTCACAATACACA CGCCGGCTTGTGTTATTCTATTTCCGCCTCTCTCAAGCCCGCCCCCAACC CACCACGCTGCAGATATCGCCCGAACGGATGAGGTTGCAGTCTCCTGTTA TGCGAGTGCAGTGGGCCTCACAAGGACAACAAGAAGGGCGGCAAGACTCA CCCTTCGCCGACAGCCATCCGTGTGTTGTGGAGTACCAGTACCCGACTCG GAGATATTCTTCAGGGGGGATAGGTGTCCGGGGGGAGCACGACCACTCAG GCCGGGTTCCCACGAGGAGGATCAGGTGCAGGCGTGTCTTGGTCACGGTG GGCCTAGGTGTACTCAAGGTAAGGAAACACGGTAACCGGTTCACGCCGAT CCCGCCGAAAGGCTTGTTGACCGCGCGCCGTGCTGGTTGCTGCTCTGATA GTTTTGCTGATAACCTCATTGACGGCTGTTCTATGCTTTTGGGGCTGCTA TTGAACCGCAGGCGCCAGCGGGAACCGTGTTTTTCTCTTTAAAACTGCTT GCCGTCGACCCGCTGGGGTATCGTGTGTTGTCATACTCCGGTGGCGTCGT GAGGGGTGACGTTGTGGCATACTTTGGCACGGTGGCGATCAACCACCTTT GCGGGGGGGGGGGGGGCTTGGCCGTATGGAGTGGTGTTGTGTGTTGTGTG TTGTGTGTCCTCTAGGGAGTTGGTCCAGGCGCTGGCCACGTAGCAGTGGG CAGTCGCTGCAGCGCGATAGTTAACACACGGTCACTCGACTTTTGAGCTT ACGACAGGGACGTATTCATGTGTTTATATACAAGAACAGCTGCACGAATA GCAACAACGGCAGCCGCAGCACCAACTGCAACGACGAGGGATAGGGGTCC AGTTGATCCACACCTTGTGTGTAGCGACTGTCCTTCTGCGGTGGAGCTCC CCTCTTTTGTCACTTTTTTTTCCTGTTTTCCTTTCATTCGGAGAAGATGT GGGCGTTCAATGAGAACCGTTTTGTTTTCGAAAACAGTGTGCTGTCCAGG ACGTATGAGCATGAACGGAGATATAAGGCACGCTCAAGCCGGTCTATGTT CTGTCTGAGTAAAGTGGACAAGAAATATTTACGTCGTAACTTGGGCAGGA AGGAACACTTTCTCTCGTGCATTCATTCTCCTGAACATTTCCTTTCTCCA GCAGTGTACATACCATGTCACACTTTTGAGGGTGGCGCTTGGCGCAAGTT CTTGACTGATCATTGGTTGATCCTCCCCGCCGTTTTTGCTTTTTATCGCA GGATGGCACGGCCCTGGCATTTTCCCCACCTCTACCCCCGGCAAAGATGT CCGCCATCCGCCGCCTAGGATTCGGGACAGCCGACAAGTTTTTCGTGAGG TGAAGCCGACGTTCGTTCGCATTCACTCTAGACTTGTACCTTTTGTCTAT GGCAGCGACCTCATGTAAACACGTGCGTGAGATTTGTCCTCGATGGGGCA CGTGTTGATGGTGAGAGGCGAGGCCGCTGACGTTCGGTCTAGCACGTCGT GCGAGCAACACGAGCGGCTGAAGCAGGAGAGATTTCGCATGAGAGACTTT GCCAACGTTTTTTCTCGACACCTGTGTTGACTGGCGAGTACCGCGCCTCG CAACACATGGCGAACGACGCAGGTGCACCCGTAAGGGCTCGGCGGGAAGC GGCAGGGTCGGCCCCGACCCCTCGCTAAACGTGGGCGTTTTGAGGCCAAT AGATCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGGGCGAG ATCGAGGAAAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14893:19..3179+

>mRNA_E-fasciculatus_F_contig14893.3481.1 ID=mRNA_E-fasciculatus_F_contig14893.3481.1|Name=mRNA_E-fasciculatus_F_contig14893.3481.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14893:19..3179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTTGCCCCCAAAAGGTTGGA
GGCAGCAGCAACGACAACGGCAACGAATAGCCCCCGACAATACCCCCAAG
TGAACGGCATCAACCTCAACGCCAACAACGGCGGCAGCACCACCAACGCT
GCCATCAGCCCCGACGGCAGGCGGGAAGACCGGGTCGGCGCATTTTTGCA
TCGGAGAGTGCGCGAGATCCTTCGCGCGGGCGGCGATGGCAGCGGTGGCG
GCTGCGGCATCGACGAAGGCATTTTGGGGTTCCTGGTGAGAAAGCAGCAC
GCTGTGGAGGGCTGCGATGACCTGGACGTCGTGTCCGTCGCAGGGTACGG
CATGTACGAGGAGCTCGAGGGCGGGGACGTTAGGGTCCCCGGCGGGTTTT
CCAGGGTGGTGGAGGCTTTGGCGGCGAAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCATCTTGCCCCCAAAAGGTTGGAGGCAGCAGCAACGACAACGGC
AACGAATAGCCCCCGACAATACCCCCAAGTGAACGGCATCAACCTCAACG
CCAACAACGGCGGCAGCACCACCAACGCTGCCATCAGCCCCGACGGCAGG
CGGGAAGACCGGGTCGGCGCATTTTTGCATCGGAGAGTGCGCGAGATCCT
TCGCGCGGGCGGCGATGGCAGCGGTGGCGGCTGCGGCATCGACGAAGGCA
TTTTGGGGTTCCTGGTGAGAAAGCAGCACGCTGTGGAGGGCTGCGATGAC
CTGGACGTCGTGTCCGTCGCAGGGTACGGCATGTACGAGGAGCTCGAGGG
CGGGGACGTTAGGGTCCCCGGCGGGTTTTCCAGGGTGGTGGAGGCTTTGG
CGGCGAAGATATCGCCCGAACGGATGAGGTTGCAGTCTCCTGTTATGCGA
GTGCAGTGGGCCTCACAAGGACAACAAGAAGGGCGGCAAGACTCACCCTT
CGCCGACAGCCATCCGTGTGTTGTGGAGTACCAGTACCCGACTCGGAGAT
ATTCTTCAGGGGGGATAGGTGTCCGGGGGGAGCACGACCACTCAGGCCGG
GTTCCCACGAGGAGGATCAGGTGCAGGCGTGTCTTGGTCACGGTGGGCCT
AGGTGTACTCAAGATATCGCCCGAACGGATGAGGTTGCAGTCTCCTGTTA
TGCGAGTGCAGTGGGCCTCACAAGGACAACAAGAAGGGCGGCAAGACTCA
CCCTTCGCCGACAGCCATCCGTGTGTTGTGGAGTACCAGTACCCGACTCG
GAGATATTCTTCAGGGGGGATAGGTGTCCGGGGGGAGCACGACCACTCAG
GCCGGGTTCCCACGAGGAGGATCAGGTGCAGGCGTGTCTTGGTCACGGTG
GGCCTAGGTGTACTCAAGGATGGCACGGCCCTGGCATTTTCCCCACCTCT
ACCCCCGGCAAAGATGTCCGCCATCCGCCGCCTAGGATTCGGGACAGCCG
ACAAGTTTTTCGTGAGGATGGCACGGCCCTGGCATTTTCCCCACCTCTAC
CCCCGGCAAAGATGTCCGCCATCCGCCGCCTAGGATTCGGGACAGCCGAC
AAGTTTTTCGTGAGGTGCACCCGTAAGGGCTCGGCGGGAAGCGGCAGGGT
CGGCCCCGACCCCTCGCTAAACGTGGGCGTTTTGAGGCCAATAGATCAGC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGGGCGAGATCGAGGA
AACGTGCACCCGTAAGGGCTCGGCGGGAAGCGGCAGGGTCGGCCCCGACC
CCTCGCTAAACGTGGGCGTTTTGAGGCCAATAGATCAGCAGAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGGGGGGCGAGATCGAGGAAAC
back to top