mRNA_E-fasciculatus_F_contig14832.3447.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14832.3447.1
Unique NamemRNA_E-fasciculatus_F_contig14832.3447.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14832.3447.1 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.110e-77
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:   13 QKFLRNGGHVDARNKDTMWTLLHTACHAGQSRVVEVLVSAGAKLESEVEGQYNPLLLCCSCGSRENMVCPVLRSVPDEHVEDPEYFEECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSKC 402
            +KFLRNGGHVDARNKDTMWTLLHTACHAGQ+RVVEVLVSAGAKLESEVEGQYNPLLLCCSCG   NMVCPVLRSVP+EHVED E+FEECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSKC
Sbjct:   44 KKFLRNGGHVDARNKDTMWTLLHTACHAGQNRVVEVLVSAGAKLESEVEGQYNPLLLCCSCGCHNNMVCPVLRSVPNEHVEDLEHFEECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSKC 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14832.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW6_ECTSI1.110e-7793.85Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14832contigE-fasciculatus_F_contig14832:255..1962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue5.2e-65
Seed eggNOG ortholog2880.D8LJW6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size627
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14832.3447.1prot_E-fasciculatus_F_contig14832.3447.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14832 255..1962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.3357656-CDS-E-fasciculatus_F_contig14832:254..5451622927965.3357656-CDS-E-fasciculatus_F_contig14832:254..545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 255..545 +
1695995770.3416393-CDS-E-fasciculatus_F_contig14832:254..5451695995770.3416393-CDS-E-fasciculatus_F_contig14832:254..545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 255..545 +
1622927965.3537843-CDS-E-fasciculatus_F_contig14832:995..12161622927965.3537843-CDS-E-fasciculatus_F_contig14832:995..1216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 996..1216 +
1695995770.3582742-CDS-E-fasciculatus_F_contig14832:995..12161695995770.3582742-CDS-E-fasciculatus_F_contig14832:995..1216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 996..1216 +
1622927965.368879-CDS-E-fasciculatus_F_contig14832:1847..19621622927965.368879-CDS-E-fasciculatus_F_contig14832:1847..1962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 1848..1962 +
1695995770.3683383-CDS-E-fasciculatus_F_contig14832:1847..19621695995770.3683383-CDS-E-fasciculatus_F_contig14832:1847..1962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14832 1848..1962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14832.3447.1

>prot_E-fasciculatus_F_contig14832.3447.1 ID=prot_E-fasciculatus_F_contig14832.3447.1|Name=mRNA_E-fasciculatus_F_contig14832.3447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
SQKTQKFLRNGGHVDARNKDTMWTLLHTACHAGQSRVVEVLVSAGAKLES
EVEGQYNPLLLCCSCGSRENMVCPVLRSVPDEHVEDPEYFEECGHMKAAR
VLLKAGANLESTTDQLFTPLLIAVFNGKLGLSKCLVAAGANVEARNKQSF
TSLTVAAQQGHADIVGFLLDSGANIEARTDTKLSPLMVAAQEGRAPEVQL
LLRAGASLE
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mRNA from alignment at E-fasciculatus_F_contig14832:255..1962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14832.3447.1 ID=mRNA_E-fasciculatus_F_contig14832.3447.1|Name=mRNA_E-fasciculatus_F_contig14832.3447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14832:255..1962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCACAAAAAACACAGAAATTCCTGCGGAATGGAGGGCACGTAGATGCCAG
GAACAAGGACACCATGTGGACCCTGCTTCACACTGCGTGTCATGCCGGCC
AGAGCCGAGTAGTCGAGGTCCTCGTGTCCGCAGGAGCGAAGCTTGAGAGC
GAGGTGGAGGGGCAATATAACCCTCTCCTCCTGTGCTGTAGCTGCGGTAG
TCGCGAGAACATGGTCTGCCCGGTGTTGCGGTCGGTTCCCGACGAACACG
TCGAGGACCCCGAATATTTCGAGGAGTGTGGACATATGAAGGTGAGCATA
GGACACGGGGCTTTGGCATAGGGAGAGCGTTAAGGGTTTAGCCGGGATGC
CACCACGAACTGTGGTCTACGCTCATAGCCACTAGTGGCCGTTTCGCTTG
GAGCGGAGACCCGCTATAGATATGATAGACACTACTCGTTGCGTCTCACC
GCGCCATTCGTCCAGTGTCATGACTGCGCATGATACTCACAGGAGAGAGC
TGAACGGCATCTCATAGGGGGGGGGGGTCCCTTCTTCTAGACGGTCAACC
GGCAGTCGAAATTAAAGCTGACAGACAGGGTAGTTGGCGTATCGTGGCGT
CCTGACTGCGGTCCAAGTTACAGCACGGTAGGACAGGGTAGGACCACACA
AACCACCCTCCAAGCTTGTTGGTGAAGAACGAACATCAATGCCTACTCTT
TCGATTTCGCTCCGCGACACGAATGGAACAACGAACGGCAGGCGGCCCGC
GTTCTCCTCAAGGCCGGAGCGAACCTTGAGAGCACCACCGACCAGCTGTT
CACGCCCCTCCTAATCGCCGTCTTCAACGGCAAGCTCGGCCTCTCCAAGT
GTCTCGTGGCTGCGGGAGCCAACGTGGAAGCCAGGAACAAGCAGAGCTTC
ACCTCGTTGACTGTTGCCGCACAGCAAGGACATGCCGACATAGTGGGGTT
CCTTCTGGACAGGTGCACTATTTTCTACAGCCCACGTTGAATCTCCCCCC
GCCCGCGCTGCCGCACGTCATCCTGAGGTAGCTTCTACACTTGGTTTTGT
ACACCGCAGAGAGGGTATGCGACAAGTGACGATACAGGTTCTCACACGTA
TTGTTCTGCTCGCAACTCTCTTCGCGCGGTGGGCAGTATGTTAAAAACCG
TGCCAGTTTCGTAGACTGTTCGTGCTCGGCCCACAACGAGACACCGGACG
CTTGGAAGCCACGTTTCGTAGTCCGCCGAGAGTTTCGGGCATCGTTTAGG
CTCGAAGCATCGTACTACCCCACCCCTTCGGGAGTAGCTCTCTGGGCACC
CAGCGAAAAGAAGACTTCATGCGCAGTTTGAGAGACCGCTTCCAGTAGCT
CCGAGCTCTGGGGTCGAACGGGCCTGGCTGGCGCGCGGTCGGTCGGGAGT
AAAAGTATTGTGTCGCGTGGTATCGTCAAGCGCTGTCTTGATGAATCAAG
TTGACAAAGTTTGAGTACCTCCTTTTTTTTCGCCACACGCACGCACGTAG
TTGTCAACTCATTAACAGGTACACCGCAGGACATCCAGCCAAAAATACTT
ACATTCTCGCTGTCTTCGCCTGCCGGACCCCGCCTCCACACAGCGGCGCG
AACATCGAAGCCAGGACGGACACCAAGCTTTCCCCGCTCATGGTAGCCGC
GCAGGAGGGAAGAGCACCCGAAGTGCAGCTTCTGCTCAGGGCCGGGGCTA
GCTTGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14832:255..1962+

>mRNA_E-fasciculatus_F_contig14832.3447.1 ID=mRNA_E-fasciculatus_F_contig14832.3447.1|Name=mRNA_E-fasciculatus_F_contig14832.3447.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14832:255..1962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCACAAAAAACACAGAAATTCCTGCGGAATGGAGGGCACGTAGATGCCAG
GAACAAGGACACCATGTGGACCCTGCTTCACACTGCGTGTCATGCCGGCC
AGAGCCGAGTAGTCGAGGTCCTCGTGTCCGCAGGAGCGAAGCTTGAGAGC
GAGGTGGAGGGGCAATATAACCCTCTCCTCCTGTGCTGTAGCTGCGGTAG
TCGCGAGAACATGGTCTGCCCGGTGTTGCGGTCGGTTCCCGACGAACACG
TCGAGGACCCCGAATATTTCGAGGAGTGTGGACATATGAAGTCACAAAAA
ACACAGAAATTCCTGCGGAATGGAGGGCACGTAGATGCCAGGAACAAGGA
CACCATGTGGACCCTGCTTCACACTGCGTGTCATGCCGGCCAGAGCCGAG
TAGTCGAGGTCCTCGTGTCCGCAGGAGCGAAGCTTGAGAGCGAGGTGGAG
GGGCAATATAACCCTCTCCTCCTGTGCTGTAGCTGCGGTAGTCGCGAGAA
CATGGTCTGCCCGGTGTTGCGGTCGGTTCCCGACGAACACGTCGAGGACC
CCGAATATTTCGAGGAGTGTGGACATATGAAGGCGGCCCGCGTTCTCCTC
AAGGCCGGAGCGAACCTTGAGAGCACCACCGACCAGCTGTTCACGCCCCT
CCTAATCGCCGTCTTCAACGGCAAGCTCGGCCTCTCCAAGTGTCTCGTGG
CTGCGGGAGCCAACGTGGAAGCCAGGAACAAGCAGAGCTTCACCTCGTTG
ACTGTTGCCGCACAGCAAGGACATGCCGACATAGTGGGGTTCCTTCTGGA
CAGGCGGCCCGCGTTCTCCTCAAGGCCGGAGCGAACCTTGAGAGCACCAC
CGACCAGCTGTTCACGCCCCTCCTAATCGCCGTCTTCAACGGCAAGCTCG
GCCTCTCCAAGTGTCTCGTGGCTGCGGGAGCCAACGTGGAAGCCAGGAAC
AAGCAGAGCTTCACCTCGTTGACTGTTGCCGCACAGCAAGGACATGCCGA
CATAGTGGGGTTCCTTCTGGACAGCGGCGCGAACATCGAAGCCAGGACGG
ACACCAAGCTTTCCCCGCTCATGGTAGCCGCGCAGGAGGGAAGAGCACCC
GAAGTGCAGCTTCTGCTCAGGGCCGGGGCTAGCTTGGAGCGGCGCGAACA
TCGAAGCCAGGACGGACACCAAGCTTTCCCCGCTCATGGTAGCCGCGCAG
GAGGGAAGAGCACCCGAAGTGCAGCTTCTGCTCAGGGCCGGGGCTAGCTT
GGAG
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