mRNA_E-fasciculatus_F_contig1480.3430.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1480.3430.1
Unique NamemRNA_E-fasciculatus_F_contig1480.3430.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1480.3430.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 3.700e-59
Identity = 117/162 (72.22%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:  289 RFLVLDNAVVLVYGSESDFADHEEPLDDVVLSGESVVETTRERGEVLVKLRGPDHSPLCF--SAGDVHNSATRPDSEAWEIAISREIAGLRGEPDTSRRPRTVAAARGRGGNRSWWPWNAARRGVGGESGKAEPSLIADPGVGGGSPNGTETDDSNHDETKH 768
            RFLVLD+AV+LVY S+SD+ADH+EPLDDVVLS ESVVETTRER   LVKLRGP HSPLCF  SA +V++S TRPDSEAWE+AIS+EIAGL G+  TSRRP TVAAARG  G RSW  WNA RR   G SGKA  +LIADP  GGGS + TE D SNHDETKH
Sbjct:   15 RFLVLDHAVLLVYASKSDWADHQEPLDDVVLSAESVVETTREREGALVKLRGPGHSPLCFTCSAVNVNDSTTRPDSEAWEVAISQEIAGLGGDAGTSRRPHTVAAARGGRGVRSWRLWNAVRRDAEGNSGKAGAALIADPAGGGGSVDATEKDGSNHDETKH 176
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BLAST of mRNA_E-fasciculatus_F_contig1480.3430.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.210e-32
Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:  430 VKLRGPDHSPLCF--SAGDVHNSATRPDSEAWEIAISREIAGLRGEPDTSRRPRTVAAARGRGGNRSWWPWNAARRGVGGESGKAEPSLIADPGVGGGSPNGTETDDSNH 753
            V++RGP HSPLCF  SA + ++S TRPDSEAWE+AISREIAGL     TSRR  TVAAARGRGG  SW  WN+ RRG GG+SGKAEP+LI D   GGG  + TE DDSNH
Sbjct:    6 VRVRGPGHSPLCFTCSAVNANDSTTRPDSEAWEMAISREIAGLGRGAGTSRRSHTVAAARGRGGVLSWRLWNSVRRGAGGDSGKAEPALITDSATGGGGVDATEKDDSNH 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1480.3430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIX0_ECTSI3.700e-5972.22Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K0W6_9PHAE2.210e-3266.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1480contigE-fasciculatus_F_contig1480:13122..17831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue8.6e-54
Seed eggNOG ortholog2880.D7FIX0
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size781
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1480.3430.1prot_E-fasciculatus_F_contig1480.3430.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1480 13320..17831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.377757-UTR-E-fasciculatus_F_contig1480:13121..133191622927963.377757-UTR-E-fasciculatus_F_contig1480:13121..13319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1480 13122..13319 +
1695995769.4468262-UTR-E-fasciculatus_F_contig1480:13121..133191695995769.4468262-UTR-E-fasciculatus_F_contig1480:13121..13319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1480 13122..13319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.3932397-CDS-E-fasciculatus_F_contig1480:13319..134111622927963.3932397-CDS-E-fasciculatus_F_contig1480:13319..13411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 13320..13411 +
1695995769.4568844-CDS-E-fasciculatus_F_contig1480:13319..134111695995769.4568844-CDS-E-fasciculatus_F_contig1480:13319..13411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 13320..13411 +
1622927963.4085739-CDS-E-fasciculatus_F_contig1480:15916..160491622927963.4085739-CDS-E-fasciculatus_F_contig1480:15916..16049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 15917..16049 +
1695995769.4650173-CDS-E-fasciculatus_F_contig1480:15916..160491695995769.4650173-CDS-E-fasciculatus_F_contig1480:15916..16049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 15917..16049 +
1622927963.4237573-CDS-E-fasciculatus_F_contig1480:16833..171061622927963.4237573-CDS-E-fasciculatus_F_contig1480:16833..17106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 16834..17106 +
1695995769.4769425-CDS-E-fasciculatus_F_contig1480:16833..171061695995769.4769425-CDS-E-fasciculatus_F_contig1480:16833..17106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 16834..17106 +
1622927963.4366682-CDS-E-fasciculatus_F_contig1480:17747..178311622927963.4366682-CDS-E-fasciculatus_F_contig1480:17747..17831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 17748..17831 +
1695995769.4885578-CDS-E-fasciculatus_F_contig1480:17747..178311695995769.4885578-CDS-E-fasciculatus_F_contig1480:17747..17831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1480 17748..17831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1480.3430.1

>prot_E-fasciculatus_F_contig1480.3430.1 ID=prot_E-fasciculatus_F_contig1480.3430.1|Name=mRNA_E-fasciculatus_F_contig1480.3430.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
MSSARPIQGEVVLHRFPGLLGSLGWGRRHSRFLVLDNAVVLVYGSESDFA
DHEEPLDDVVLSGESVVETTRERGEVLVKLRGPDHSPLCFSAGDVHNSAT
RPDSEAWEIAISREIAGLRGEPDTSRRPRTVAAARGRGGNRSWWPWNAAR
RGVGGESGKAEPSLIADPGVGGGSPNGTETDDSNHDETKHEEEE
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mRNA from alignment at E-fasciculatus_F_contig1480:13122..17831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1480.3430.1 ID=mRNA_E-fasciculatus_F_contig1480.3430.1|Name=mRNA_E-fasciculatus_F_contig1480.3430.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4710bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1480:13122..17831+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGGCTTCAGGTTTACGGTGCGAGCTCAGCTGGGCGCTGATTACATCG
CCTCCTTCTTCTGGTGTGTGTTCCGTTGACTACTAGGAATAGGTCTCCGC
GGTCGCCCCAGCTGTGTGGTGCCGTGGGGGCTCTCGGCCGGGCTCGCCAT
TTGAAGGAGGAGCCAGCAGACCCTTAGACTACAGGTCCGAGTCGATCAAT
GTCTTCAGCTCGCCCCATTCAAGGTGAAGTTGTCCTCCACCGCTTCCCTG
GGCTTCTGGGCAGCCTAGGCTGGGGGCGTCGACACTCCAGGTGAGGGCTA
ACGATGCTGGCATCACAGAGCTCTGGACCCAGGTCTCGGCGAAGACTGGT
GACTGCTGTTCCATGCTGTATTTTCTTCTACAACAGCAGTAGTTGCGGTA
AGATCGTCTTGCTTTGTCCTGCCCGCTCTCCTGATGGCAGGGATGACAGC
AGCAGCAGCAGACGACCTTCCAGCAGCTGTGAAAAGAAAAGACGCACCCC
CGGCGGTCTGTCTGTCCGCACGTGTTGCTTGTCGCCCTTTCTTTGCGATG
AGGCTCAACTCTAGCCCTCTCTGGCGGGCTTCCATAACCGTTGACTTCCA
GTCTTGCTCTTACATGTATACAAAACCTGACACCCAGGAACAGCAGATGC
TCCTCTTTTGGCAAAACACCCCGAGGCACGCCTGCCTGCCTCTGCCTGCT
GCCCTGCTGTGTAGGCGATTGCCATTGATGAGGCTCCACCGATACACCAT
AGATGTCTCAGTCTGAAGGGCGTTTGTTAGTTCGAATGATGGAGTTTGAA
GGATCGATGGTAGCCTAACTGGGTGTTGCCCCTTTTATATTGTGCTTGAG
GCCACTACACTGGTGTACATATGAAGGCAGCATCATCCGGGCATGCGGAT
GTACTTTCTACTACATGTACGCACTACGGTTCCGTTTCAACTCTCGACGG
TTCGTTTATTGATGATATTGAAGCTGTGGTGTTGTTCGTTGTTACGCAAC
CGCCTTGTGCCTTTGGTGTCGTAGATGCGCAATTTTAAAGTATTCTTACT
ACAGTGGTAGAAGGGGGTAAGCCGGTTGCTATCACTCAATACCTTGCGGC
TGTCTACACTGGGATTCATAGTACGCGACGCTGTGGAAAACTTCAGAAAT
GCACCGGATCTTCAAGACTGGTGCGTCCGCTCCCCGCTGGAATGCGAAGC
ACTACAAGCAGTACAGCAGACGAGTGGAAGATCAGCGACCCGAGGGGAAC
AAAGCCGTGACACACTCGCCCTGCTGCATGCTGCACTACATACTGTACTA
CATGTAGTACTGCTGTACTATTAATTAATAGTACTGCTGTACCGCCGAAC
GATGGGCACCTATTATAGCAGCACTGCCGCCGGCATAAATGAAGAATGGT
TTCGGGCGCACGTTTACACTCCATTGTAGATAAAGGCAGCGCGGTGTGGA
AAGTGGCGGGGCACAGCGATTTTCCTGTGGAATGTTCCTGTTTGCGAGCT
CCAATAGCCCGAAGATCGACTGGTGGGTGGGTGGGGATGGAGGAGGACAG
ATTACCCCGTAGATAGAACGCTTCCACAGCAGTATCATGGCGTTACCTCC
GAACTCCGCAGACAAAACGCGGAATTGGAAACAAACAAGATATTCTCCTC
ATTTGTACTGCTGTACTGCTGTATAATAATATAATAGCAGGTAAAACGTT
TACAAAATGAACAAAACCAAACCCGAACGTCTGCTAGAACGCTGCTCGTA
CTGCGGTGAGGATCATGGCATCAGCATCAGCGTCACATCCATCCCCCCCC
ATGATTTTCGACAGCAGCGCTAGCAGTGATCCAGCGATGTCAACTGAAAC
CATTCGGCGTGCTGAATTCTAGACTATCCAAACTGCAGGAGGAGGACAGA
TATACCCCGATGGATACATAAGACGCTTCCTTTTGCACCTACAGGTTGCT
GGTTCGGACCCGGCCCGATGCTGTACTTTTTTGCACCGCTCTAAACCTAG
GACATTGCTACAATACCCCTGAACCCCAACCCAACCGACCCAACCCAAAC
CTTTGCCAATGGAAAGTGCTATTGTATGCATAGGTCGTCACTGTACTGTT
CTGAGTAAGTGGCAAGACGCGCCGCGGGGCTAGTTAGGTGGCTGTGCACC
GTTAGCGCAATTAGTAGGTTGCTGCCACGGTGAACAGCTAGGTTGCCGTG
TATGGGCTGCACCTACAATACCCGAAGAATGTTCCGAGAATTGGTGTTGT
CTCCTGTTTGGCTCGGTGGAGGCGGTACGTGTGTTTGCTTCCCTCGTCGC
CCGCCCTACTTTGGTCAGCCAAATATGTATCTCAAATCTCTCGTTATGAG
TCTCATGGGGCGAGAGCGTCAACAACACTAACGCCTCGAGCTCGCGCTCT
GCTGCTGCTGCTGCTGCTGCTGCGGTAGCAAAGACTAGCAGTCACAAGCC
AAAGCCGTGAATACGCACAACAATGAGAGAGAACAGCTGAACCCGTACTC
ATCGCGTTCAAGTTGAAAGCAAGCACCGCAGGAGGAAAGCATCGTCTCTT
GCCCTTGTGGGACCTCGGCTCATGTGTCGAACATGTACCGGGCCGAGCGG
TGCAGACTTGCGTCAAGAAAGACGAAACGGTCAACACCAAAAACAAGCGA
TAACGGCAGCTCTATCATCCAAAGGAACCAAAGGAACCAAAGGAACCCGA
TGGGATGTGCCGCCTCCACCATTCTGTTCGCGCAGTCTCCGCTAATCCTA
ACCCTACAAATTGGCGTTGGTGGGATGGCGTCTTGTGATGCCCAGGTTCC
TCGTGCTAGACAACGCCGTGGTGCTGGTGTACGGGAGCGAGAGCGACTTC
GCCGATCACGAGGAACCCTTGGACGATGTCGTGCTGTCCGGAGAGTCGGT
CGTGGAGACGACGCGGGAGAGGGGGGAGGTGAGCATCGTGTGTCGTGTAA
CATCGAGCGAGTTACTCGAGGGTGCGTTGCGTTGCGAGTCGCGCCTGAGG
CTGGCTGGCACTACATTGCGGAGAAATTATTGTGCCTTTTGTACAGTTGT
TGCTGTATGGCTTCGTAACGGATAGCGGAACATAGGAGTCCATGGAAGAC
ATTGGTCACGTAGTAGACATGAAGGAGGCTTCTGAGCAGCAGCAGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCGAAGGAAAGCCACAACTCTGCGTG
GGGGATTTTAGTGGACAAGGTGTTTGAGGACTCTACCTACAAGCAGAGAT
CACCAGGAGTTGAAGAGGAGCAAGGCTGTGGCGAGCACTATCACAGCTTT
GGCACCACTCACGGCAGTGGAGTGGCATGTGGTGCATCACGTCACGCATC
TCTTAGCTAGCGCAAGGGGAGACAGCACCCTGAGCTGGCACCCGCTGCAA
AAGCGTTGGAATTGTTGGCACCCCCGTACCCACTTAGTCGCAGAGATGTT
TGTAGCTAGATGTGTGTGGAGGTTGGGAGAGGGGGGGGGGGTACTAGCCG
GTACTCCATCTTGTTGGTGTTGGTGGGGGGTGGCACACGTTGTTCAGATG
TGCACGAGACTCGTCAGGTATGTGGAGGTGATGATGGCATGCCCACCCCT
GTATCACTGCCTTACGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTTCTGCAACGATGCTCGCCCTGCACCCGCTCGCACGCCCCTTGCGG
TAAATATGTCAGGTGCTGGTAAAGCTCCGCGGCCCGGACCACTCGCCGCT
CTGCTTTAGCGCCGGCGATGTTCACAACTCCGCAACGCGGCCTGACAGCG
AGGCGTGGGAGATAGCAATAAGCCGGGAGATCGCTGGCCTCAGGGGGGAA
CCGGACACCTCCAGACGCCCGCGCACGGTAGCGGCTGCTAGGGGTCGGGG
AGGAAATCGCTCTTGGTGGCCGTGGAATGCGGCCCGCCGGGGTGTGGGGG
GGGAATCTGGGAAGGCTGAGCCTTCGTTGATTGCGGTGAGGACTGGGGTA
TTGTTTCGATATTGGTGCTGCTGCTTCTGCCGCTGGCCCTTTCGCTGAAT
TCGGCGGGTTGGTAAGGGACACACGAATGCCTTCATGAAGAATTAGGTCA
TCTAGAGTAAAGGGGTCCCGATGTATCAGTGTATCAGTGATGGCACGACT
CTGCTTAATTCTCGAGGCCATCAATTCATTAATTCCAGGTGAATGGTAAG
CGCTCTGAGCTCCATATGTCGAGGTTGATGACCATGTTTAAAGTACGAAG
GTTTGAGGGGAAGAAATTAAAGTTCCCTGTTTGGTCCTAGAACTTCGAGG
CGTGAAGCATAACACGGGTGTATGTATGCTTGTTGTGTTTCGGTTATGGG
GAAGAGGTGTATACCTTTGCGTTGCATCTGTGTGTGGTAAGCTCTGCACA
CGAACGCGTTGAGCGAGTTGTACTCTGCGTCTTAAACGGTGATGTCCTTG
ACGATGTCCTCTCTTTTCGTTCCACGAATTTACTCTGTTAATGATTTGCG
GACGATAGAACAATGTCAAACCAACCTGCACCTCGATTTCCGGGCCATGT
TGTCTTGCGGAGTTGGATGCATCTTGCTATGTATGCTAAATCCCTGCTGG
AACATGAACATTGTTTGGTGCGGCAGGACCCGGGCGTCGGTGGCGGGAGC
CCCAACGGCACAGAGACGGATGACTCGAACCATGACGAAACCAAGCACGA
AGAGGAAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1480:13122..17831+

>mRNA_E-fasciculatus_F_contig1480.3430.1 ID=mRNA_E-fasciculatus_F_contig1480.3430.1|Name=mRNA_E-fasciculatus_F_contig1480.3430.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1480:13122..17831+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTCAGCTCGCCCCATTCAAGGTGAAGTTGTCCTCCACCGCTTCCC
TGGGCTTCTGGGCAGCCTAGGCTGGGGGCGTCGACACTCCAGATGTCTTC
AGCTCGCCCCATTCAAGGTGAAGTTGTCCTCCACCGCTTCCCTGGGCTTC
TGGGCAGCCTAGGCTGGGGGCGTCGACACTCCAGGTTCCTCGTGCTAGAC
AACGCCGTGGTGCTGGTGTACGGGAGCGAGAGCGACTTCGCCGATCACGA
GGAACCCTTGGACGATGTCGTGCTGTCCGGAGAGTCGGTCGTGGAGACGA
CGCGGGAGAGGGGGGAGGTTCCTCGTGCTAGACAACGCCGTGGTGCTGGT
GTACGGGAGCGAGAGCGACTTCGCCGATCACGAGGAACCCTTGGACGATG
TCGTGCTGTCCGGAGAGTCGGTCGTGGAGACGACGCGGGAGAGGGGGGAG
GTGCTGGTAAAGCTCCGCGGCCCGGACCACTCGCCGCTCTGCTTTAGCGC
CGGCGATGTTCACAACTCCGCAACGCGGCCTGACAGCGAGGCGTGGGAGA
TAGCAATAAGCCGGGAGATCGCTGGCCTCAGGGGGGAACCGGACACCTCC
AGACGCCCGCGCACGGTAGCGGCTGCTAGGGGTCGGGGAGGAAATCGCTC
TTGGTGGCCGTGGAATGCGGCCCGCCGGGGTGTGGGGGGGGAATCTGGGA
AGGCTGAGCCTTCGTTGATTGCGGTGCTGGTAAAGCTCCGCGGCCCGGAC
CACTCGCCGCTCTGCTTTAGCGCCGGCGATGTTCACAACTCCGCAACGCG
GCCTGACAGCGAGGCGTGGGAGATAGCAATAAGCCGGGAGATCGCTGGCC
TCAGGGGGGAACCGGACACCTCCAGACGCCCGCGCACGGTAGCGGCTGCT
AGGGGTCGGGGAGGAAATCGCTCTTGGTGGCCGTGGAATGCGGCCCGCCG
GGGTGTGGGGGGGGAATCTGGGAAGGCTGAGCCTTCGTTGATTGCGGACC
CGGGCGTCGGTGGCGGGAGCCCCAACGGCACAGAGACGGATGACTCGAAC
CATGACGAAACCAAGCACGAAGAGGAAGAGGACCCGGGCGTCGGTGGCGG
GAGCCCCAACGGCACAGAGACGGATGACTCGAACCATGACGAAACCAAGC
ACGAAGAGGAAGAG
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