mRNA_E-fasciculatus_F_contig14756.3398.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig14756.3398.1
Unique Name	mRNA_E-fasciculatus_F_contig14756.3398.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig14756.3398.1 vs. uniprot
Match: D8LJ80_ECTSI (N-deacetylase/N-sulfotransferase (Heparan glucosaminyl) 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ80_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 5.570e-68
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 1

Query:    1 EKSRAEDGPPVMPLVTLDGKDVTLPSVIIVGARRSGTSTLFSMLSQHPAVGSIAPEPHPEISSGFMVQDPDTFPQGAEWPGDNLEKELPASVLGKLFEEIARPFTVSESREEGVDAPNLVTMAVSPG 381
            E+SRAEDGP  MP+V LDGK VTLPSVIIVGARRSGTSTLFSMLSQHPAVGS+APEP PE+S GFM QDP+TFPQ AEWPGDNLEKELPASVLGKL EE ARP+TVSESR EGVDAPNLVT AVSPG
Sbjct:  137 ERSRAEDGPAAMPVVPLDGKHVTLPSVIIVGARRSGTSTLFSMLSQHPAVGSMAPEPRPELSCGFMAQDPETFPQEAEWPGDNLEKELPASVLGKLLEEFARPYTVSESRHEGVDAPNLVTTAVSPG 263

[Close]

BLAST of mRNA_E-fasciculatus_F_contig14756.3398.1 vs. uniprot
Match: A0A6H5K7J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.110e-36
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 EKSRAEDGPPVMPLVTLDGKDVTLPSVIIVGARRSGTSTLFSMLSQHPAVGSIAPEPHPEISSGFMVQDPDT 216
            EKSRAEDGP VMP+VTLDGK+VTLPSVIIVGARRSGTSTLFSMLSQHPAVGSIAPEP PE+SSGFM QDP+T
Sbjct:  134 EKSRAEDGPAVMPVVTLDGKEVTLPSVIIVGARRSGTSTLFSMLSQHPAVGSIAPEPRPELSSGFMAQDPET 205

[Close]

BLAST of mRNA_E-fasciculatus_F_contig14756.3398.1 vs. uniprot
Match: A0A6H5K695_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K695_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.470e-22
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query:  217 FPQGAEWPGDNLEKELPASVLGKLFEEIARPFTVSESREEGVDAPNLVTMAVSPG 381
            FP  AEWPGDNLEKELPASVLGKL EE ARP+TVSESR+EG+D P LVT AVSPG
Sbjct:   16 FPHDAEWPGDNLEKELPASVLGKLLEEFARPYTVSESRQEGIDGPILVTTAVSPG 70

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig14756.3398.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig14756.3398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LJ80_ECTSI	5.570e-68	85.83	N-deacetylase/N-sulfotransferase (Heparan glucosam...	[more]
A0A6H5K7J7_9PHAE	4.110e-36	90.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K695_9PHAE	5.470e-22	81.82	Sulfotransfer_1 domain-containing protein n=1 Tax=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig14756	contig	E-fasciculatus_F_contig14756:732..3230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	222.2
Seed ortholog evalue	1.3e-55
Seed eggNOG ortholog	2880.D8LJ80
Preferred name	NDST1
KEGG ko	ko:K02576,ko:K02577,ko:K02578,ko:K02579
KEGG Pathway	ko00534,ko01100,map00534,map01100
KEGG Module	M00059
GOs	GO:0000003,GO:0000137,GO:0000139,GO:0000271,GO:0001501,GO:0001568,GO:0001667,GO:0001704,GO:0001707,GO:0001932,GO:0001934,GO:0001944,GO:0001990,GO:0001991,GO:0002002,GO:0002009,GO:0002165,GO:0003002,GO:0003008,GO:0003013,GO:0003044,GO:0003073,GO:0003081,GO:0003205,GO:0003279,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006464,GO:0006476,GO:0006477,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007275,GO:0007276,GO:0007283,GO:0007350,GO:0007365,GO:0007367,GO:0007369,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007424,GO:0007427,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007498,GO:0007507,GO:0007509,GO:0007552,GO:0007560,GO:0007585,GO:0008015,GO:0008078,GO:0008146,GO:0008150,GO:0008152,GO:0008194,GO:0008217,GO:0008375,GO:0008543,GO:0008587,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009719,GO:0009790,GO:0009791,GO:0009792,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010562,GO:0010604,GO:0010631,GO:0010646,GO:0010647,GO:0010817,GO:0012505,GO:0015012,GO:0015014,GO:0015016,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016055,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0016782,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030166,GO:0030201,GO:0030203,GO:0030900,GO:0030901,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031984,GO:0031985,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0033692,GO:0034483,GO:0034637,GO:0034645,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0035904,GO:0036211,GO:0036465,GO:0040008,GO:0040011,GO:0042074,GO:0042221,GO:0042325,GO:0042327,GO:0042328,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043410,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044344,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045570,GO:0045880,GO:0045937,GO:0046620,GO:0048232,GO:0048311,GO:0048312,GO:0048332,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048563,GO:0048568,GO:0048569,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048638,GO:0048646,GO:0048701,GO:0048702,GO:0048703,GO:0048704,GO:0048705,GO:0048706,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048870,GO:0050119,GO:0050789,GO:0050793,GO:0050794,GO:0050886,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0051923,GO:0060255,GO:0060322,GO:0060429,GO:0060541,GO:0060562,GO:0060840,GO:0060976,GO:0065007,GO:0065008,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090130,GO:0090132,GO:0098588,GO:0098657,GO:0098732,GO:0098791,GO:0099003,GO:0099504,GO:0198738,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902531,GO:1902533,GO:1904888,GO:1905114,GO:2000026
EggNOG free text desc.	[heparan sulfate]-glucosamine N-sulfotransferase activity
EggNOG OGs	KOG3703@2759,KOG3704@1
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-02_005090.1
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting category	other localisation
Exons	4
Model size	381
Cds size	381
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig14756.3398.1	prot_E-fasciculatus_F_contig14756.3398.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig14756 732..3230 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927958.9626405-CDS-E-fasciculatus_F_contig14756:731..830	1622927958.9626405-CDS-E-fasciculatus_F_contig14756:731..830	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 732..830 +
1695995767.2702067-CDS-E-fasciculatus_F_contig14756:731..830	1695995767.2702067-CDS-E-fasciculatus_F_contig14756:731..830	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 732..830 +
1622927958.9787922-CDS-E-fasciculatus_F_contig14756:1398..1514	1622927958.9787922-CDS-E-fasciculatus_F_contig14756:1398..1514	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 1399..1514 +
1695995767.2814362-CDS-E-fasciculatus_F_contig14756:1398..1514	1695995767.2814362-CDS-E-fasciculatus_F_contig14756:1398..1514	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 1399..1514 +
1622927958.9929173-CDS-E-fasciculatus_F_contig14756:2305..2444	1622927958.9929173-CDS-E-fasciculatus_F_contig14756:2305..2444	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 2306..2444 +
1695995767.2897055-CDS-E-fasciculatus_F_contig14756:2305..2444	1695995767.2897055-CDS-E-fasciculatus_F_contig14756:2305..2444	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 2306..2444 +
1622927959.0065439-CDS-E-fasciculatus_F_contig14756:3203..3230	1622927959.0065439-CDS-E-fasciculatus_F_contig14756:3203..3230	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 3204..3230 +
1695995767.2999172-CDS-E-fasciculatus_F_contig14756:3203..3230	1695995767.2999172-CDS-E-fasciculatus_F_contig14756:3203..3230	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig14756 3204..3230 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig14756:732..3230+
coding sequence from alignment at E-fasciculatus_F_contig14756:732..3230+

protein sequence of mRNA_E-fasciculatus_F_contig14756.3398.1

>prot_E-fasciculatus_F_contig14756.3398.1 ID=prot_E-fasciculatus_F_contig14756.3398.1|Name=mRNA_E-fasciculatus_F_contig14756.3398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
EKSRAEDGPPVMPLVTLDGKDVTLPSVIIVGARRSGTSTLFSMLSQHPAV
GSIAPEPHPEISSGFMVQDPDTFPQGAEWPGDNLEKELPASVLGKLFEEI
ARPFTVSESREEGVDAPNLVTMAVSPG

mRNA from alignment at E-fasciculatus_F_contig14756:732..3230+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig14756.3398.1 ID=mRNA_E-fasciculatus_F_contig14756.3398.1|Name=mRNA_E-fasciculatus_F_contig14756.3398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2499bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14756:732..3230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAGTCGAGAGCCGAAGACGGGCCGCCGGTGATGCCACTGGTGACCCT
GGACGGGAAGGATGTCACGCTCCCTTCGGTGATCATCGTGGGGGCACGGG
TGCGTAGACGCTCGAGACAAACGTTTTCGCTCGGAGCGCTCACTTGGAAG
ATGCGGCGGCCAATGCTGCGTGGTGTATCTACGTAGTGCTTTCCGTAGTA
TACCGGCCAGGGTATCGTCACTAGCAGTAGTCTTTTCAAAACTAGTAAGC
CATGCCGTCATCATTTGGGGCTCTTGTCTGTTTGACTACAACAAGAAAGC
CCACCCAAGGTTTACCTTAAGAAGGCGTGCATGTGTTTCTGTATGTGCCG
GCACCGGTGCCGTTGCAACGCGATCTTCGCGTTTTTTTTTGCATCAAATA
AAATCAGCGCTCGCGCACGTTTTTGCGGGTAGGAGCTCCAATCCGTGGTT
ACATCGTTCTCTCGTGTTATTTGCCCGCCTTTTTTTTTTTTTTTCGTACC
AGTCGTTGTTCGTGTCCTCTCCCTGGGGCTTTGACGGGTCTTTTTCGCTC
TTTTTGTCTTTTTTTTTATTTTGTTACGTCCTCTAGGTTCTCACGCGTAA
ACTCTTTGTCCATTATTTGTTTTGTTTTGCTTCTCTCTCTCTGCTGTCGT
TCTTGTTGTGTCCCCAGAGGTCAGGGACATCGACGCTGTTCAGCATGCTT
AGCCAGCATCCCGCGGTAGGTTCAATCGCCCCCGAACCCCATCCGGAGAT
ATCGAGCGGATTCATGGTGCAGGATCCAGACACGTGAGAAAAGCGAAGTA
ATTTGTAGCCACATTCATATTGCCCCTCTATTTTTACACTTTTTGGACAA
ACTCTTTTTCGTGATGGGGAGGCAAGGATCTCGTGCTTGGAATCCAATAA
GAACCTTGCCTGCAGACCCAAGGTTTCTAAACTGGACAAAGGATTTAGGC
GGAACATCTATTTTTGTTGTTGTAAGGTATGGATATCCCGCGTGGCTGGA
CGTGGCGAACTTCGCGTGGGTGGTGTGCGCGTGTCGTGCTTTTTGCGTAC
CAAAACCTGCGTCGTTGGGTTACGATGCTCTGTGGCTTGGGTGGCACCCC
CACCCGACGACGGATAACCTATGCAAGCGTGTGGGGGGGGGGGGGGTAGA
GGCAGGACTCTTTTTTCCATCTTCTCCTCCACCGTTTTCTCTGTCGTCTT
GCCGTCGGCACCGCCATCAAGACGAAGCCGATCATTCTATCTCTACCCCG
CGCACTGACGTGACACCGTACTACTGCTGTACAAGTCAGTCTTGTTTGAT
TATGACGAAAGAGGAAGCAAGGGTCCATGTACTCGAAAGAATGAGAATGA
ATCGTACAAGTGCTTCTTCTTGTTGTTTTGCGTGACCCTGGACCTTACAA
TAAAGCCCCTCAGAGGAGAGGCCAAGGCCGAAACGAACTGTGGGAAAGGT
GGATGTGGCGAGCGCCGGGGTCAGCACTCTCTCTTGACAACGACATGTGT
TTGCTCTTGGGTGCCCCGGTCGCGTGCCCACCCCCGTCCCTTCGGTCCCT
CCGCCTTTTTTTGCTCTCTCGCAGGTTCCCTCAAGGAGCCGAATGGCCCG
GCGACAACCTCGAGAAGGAGCTGCCGGCGAGCGTTTTGGGGAAACTGTTC
GAGGAGATTGCTCGGCCGTTCACGGTGTCTGAGAGCAGAGAAGAAGGGGT
TGACGCCCCCAACGTGAGTCTTGGGGGGGCGGGGGCGTACTCCTATGTTT
TTCATGCCTATGCGGTTAGATCATTGACCACGTGTCCTCGAGAGGGCGGA
GCACTTGGGGGGGGGATCTTGTTTATTTTTTTGCGACGTTTTCTCGGCAC
AGCAGTTCTTTCCGTTAGCACCTGTCTGGGGTGTTCACCTGGTTGCCGGT
GTCCGCCCGCTTGCCGCTGTAGGAGGTCACGTTTAAAAGGTGGCGTTTGG
CATGCTCGTAGCAATGCACAGAGTGGGTACACCTCGATGCAAGAGGAGGC
AACCGGGTGATGGTAGGTTGAGCTTCTAACGAATACCCGAGTAATCAGAC
ATGGGTTGAGTTCCTCTCTAATTGTCTGTTACATCAGCAGTACTCCTCTG
TAACGCGAGCACATGATTAACACTTGTGCATCGAACACAAAGGCGCGCAC
AAGCCCACCCCATCCGCCTTTTCCTGAGATCAGACACGGTGTATCTCCAA
ATGTCGTCCATGGTTGTCGTGTGCAAACTACTTCATGCAATACCACGGAA
GCAATGGCCTTGGTATGGATATTGACCTTGTTTTTTGTAGGGGGTACGGG
GTTGGTGTCAGAGATGCGGAACCCCCTCTGCACTTGATAGATTAAGTTTC
TAATAAACACCCTTCGCGAAAGCGGTCCGTTTTAATCCCCACGGACGATT
CCCCCAACGCGCTTCCAAGCATTTTCCTGCCACACGCCCCCGCCCCCCCC
CCCCCCCCCCCTTTCTGCGCAGCTTGTCACGATGGCGGTAAGCCCCGGG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14756:732..3230+

>mRNA_E-fasciculatus_F_contig14756.3398.1 ID=mRNA_E-fasciculatus_F_contig14756.3398.1|Name=mRNA_E-fasciculatus_F_contig14756.3398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14756:732..3230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAGTCGAGAGCCGAAGACGGGCCGCCGGTGATGCCACTGGTGACCCT
GGACGGGAAGGATGTCACGCTCCCTTCGGTGATCATCGTGGGGGCACGGG
AGAAGTCGAGAGCCGAAGACGGGCCGCCGGTGATGCCACTGGTGACCCTG
GACGGGAAGGATGTCACGCTCCCTTCGGTGATCATCGTGGGGGCACGGAG
GTCAGGGACATCGACGCTGTTCAGCATGCTTAGCCAGCATCCCGCGGTAG
GTTCAATCGCCCCCGAACCCCATCCGGAGATATCGAGCGGATTCATGGTG
CAGGATCCAGACACAGGTCAGGGACATCGACGCTGTTCAGCATGCTTAGC
CAGCATCCCGCGGTAGGTTCAATCGCCCCCGAACCCCATCCGGAGATATC
GAGCGGATTCATGGTGCAGGATCCAGACACGTTCCCTCAAGGAGCCGAAT
GGCCCGGCGACAACCTCGAGAAGGAGCTGCCGGCGAGCGTTTTGGGGAAA
CTGTTCGAGGAGATTGCTCGGCCGTTCACGGTGTCTGAGAGCAGAGAAGA
AGGGGTTGACGCCCCCAACGTTCCCTCAAGGAGCCGAATGGCCCGGCGAC
AACCTCGAGAAGGAGCTGCCGGCGAGCGTTTTGGGGAAACTGTTCGAGGA
GATTGCTCGGCCGTTCACGGTGTCTGAGAGCAGAGAAGAAGGGGTTGACG
CCCCCAACCTTGTCACGATGGCGGTAAGCCCCGGGCTTGTCACGATGGCG
GTAAGCCCCGGG