mRNA_E-fasciculatus_F_contig14721.3381.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14721.3381.1
Unique NamemRNA_E-fasciculatus_F_contig14721.3381.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14721.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14721contigE-fasciculatus_F_contig14721:795..2325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size176
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14721.3381.1prot_E-fasciculatus_F_contig14721.3381.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14721 802..2276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927956.9702084-UTR-E-fasciculatus_F_contig14721:794..8011622927956.9702084-UTR-E-fasciculatus_F_contig14721:794..801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14721 795..801 +
1695995766.5228462-UTR-E-fasciculatus_F_contig14721:794..8011695995766.5228462-UTR-E-fasciculatus_F_contig14721:794..801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14721 795..801 +
1622927957.2313895-UTR-E-fasciculatus_F_contig14721:2276..23251622927957.2313895-UTR-E-fasciculatus_F_contig14721:2276..2325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14721 2277..2325 +
1695995766.5656776-UTR-E-fasciculatus_F_contig14721:2276..23251695995766.5656776-UTR-E-fasciculatus_F_contig14721:2276..2325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14721 2277..2325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927956.9893684-CDS-E-fasciculatus_F_contig14721:801..8821622927956.9893684-CDS-E-fasciculatus_F_contig14721:801..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 802..882 +
1695995766.5328245-CDS-E-fasciculatus_F_contig14721:801..8821695995766.5328245-CDS-E-fasciculatus_F_contig14721:801..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 802..882 +
1622927957.0036068-CDS-E-fasciculatus_F_contig14721:1753..17901622927957.0036068-CDS-E-fasciculatus_F_contig14721:1753..1790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 1754..1790 +
1695995766.5425878-CDS-E-fasciculatus_F_contig14721:1753..17901695995766.5425878-CDS-E-fasciculatus_F_contig14721:1753..1790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 1754..1790 +
1622927957.0145779-CDS-E-fasciculatus_F_contig14721:2274..22761622927957.0145779-CDS-E-fasciculatus_F_contig14721:2274..2276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 2275..2276 +
1695995766.5528517-CDS-E-fasciculatus_F_contig14721:2274..22761695995766.5528517-CDS-E-fasciculatus_F_contig14721:2274..2276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14721 2275..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14721.3381.1

>prot_E-fasciculatus_F_contig14721.3381.1 ID=prot_E-fasciculatus_F_contig14721.3381.1|Name=mRNA_E-fasciculatus_F_contig14721.3381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
MQGYRPWEFVGTFTSRSVQRSFGPTKALARSQASIPSMS*
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mRNA from alignment at E-fasciculatus_F_contig14721:795..2325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14721.3381.1 ID=mRNA_E-fasciculatus_F_contig14721.3381.1|Name=mRNA_E-fasciculatus_F_contig14721.3381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1531bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14721:795..2325+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCAAACATGCAGGGGTATAGGCCTTGGGAATTCGTTGGGACATTTACCA
GCCGGAGCGTTCAACGGTCTTTCGGCCCTACGAAAGCTGTGAGATTCTTG
GCATTGTAGCTGTAGCGATCACCCTCCCAGTGGTCGTTGCCGACGTGCAG
AGGTACTATGTCGATCCGCCCACCTGACTGGTTTGGGTACTCGGCAGAGT
ACTCATCTTCGGGACCTCCGGGGGCTACTACTGTGGGTATTATGGGCATG
AAGCGCAGGCCACCTTTTTCTCCCCCATGTCTTTCGCTCCCTAATCAATC
AAGATATTGCCCTCGAACCTACGTTTGATTTCTAGAAGTGTATGGTACCC
TTTTTGTGGTAGTTGGCCCGTAGCCACGGCAGGTGCCCGAATCAGTTGGA
CCAGTACGAACATGGGAAGGTGTACTGAGTAGAGGCCGGAACGATAAAAA
AGAAGCAGCAACAACAACAACAACAACAACCTTCTGGATGTGATGCTTCA
TCGCATCAGAACCGTCTCCCGCCTCCAACGAGCTTTGCTCAATGTCCAGT
TGAGATCCTCGCTTGGGCCGGTATATGCCCAGAATATTCGCCGGCACTTT
TGAGGGCACCGGCGTTTTTCAGAACAGGAATATCTAGTATAATAGGAGGA
GTCGGCACTCGAGCCCAGAGATTTTCCCGACACAATACCACGCACCGGCA
TTATTCAACGGACTCCATCTCTACTGTAATGCGTCAGCCTTCGCAGGGTT
TTCCTATTCAGCAAACACGTTGGACTACAGCTTACAATCGGGGAAGTTGG
GTTTAGGCCAAGGTTGGGGATAGGGTCTCCCTCTTCGTCATGACACTTGT
TTGTGTCATGGGCCAACACCGTCCCCGCATGACCACTTCCAATACCGCTC
TGCTCGCCCCCGCGCTCGTAACAGCCAACTTTCCTACGCTGGTGTTTCAT
CCCTAGAAGCTGGCACGTTCTCAGGCCTCGATTCCCTCGATGAGCTGTGA
GTGAAACGTTGATTAACTCGATCGATCGGTTGTCGGCTGAAGGTAATGAA
CCGCAGGGAATCAATCTCTATACTACGGCGAATGTTGCGGAGTTACCCTG
CCGGACGTGTTGATGCGATAAAGAAATTATTTGGGTATGCGTAGGACAGT
TGTTAGCCAGCATTTGTACACCACGTTCGATCCATTCCGCCCGCGGACTG
ACCGCGATACCGCCATCTCGTGCAACTGGATGGCCGAGGAGTTGCGTTGA
GGTGTCTACGGGAAGCTTCCCAGAGATGTGCGCATACCGTCAGCCGCGAA
ACCGTCGAGAGTTCTGCGTGGCACAGGCTCACCATAGCGCTGGCGCACAG
AGAGATGCTATGACAGACCCTATCCGAATCATGGTCGCCAAGTGCCAAAC
ACGGTTATGGTGTATCCCATCACGATGGTCAGAACCCTTACCCCGCACTG
ACCGCGCAACTGATTGTTGTGCCCCCGAAGGACAATATTCGCCGGCGCGC
TGGGGCAAGTTCCGGCCGGGGCGTTCAACGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14721:795..2325+

>mRNA_E-fasciculatus_F_contig14721.3381.1 ID=mRNA_E-fasciculatus_F_contig14721.3381.1|Name=mRNA_E-fasciculatus_F_contig14721.3381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14721:795..2325+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGGGTATAGGCCTTGGGAATTCGTTGGGACATTTACCAGCCGGAG
CGTTCAACGGTCTTTCGGCCCTACGAAAGCTATGCAGGGGTATAGGCCTT
GGGAATTCGTTGGGACATTTACCAGCCGGAGCGTTCAACGGTCTTTCGGC
CCTACGAAAGCTCTGGCACGTTCTCAGGCCTCGATTCCCTCGATGAGCTC
TGGCACGTTCTCAGGCCTCGATTCCCTCGATGAGCTGAGA
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