mRNA_E-fasciculatus_F_contig14670.3351.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14670.3351.1
Unique NamemRNA_E-fasciculatus_F_contig14670.3351.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14670.3351.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.180e-101
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    1 LCREEDGRGLFGKYPHLKKLHHARTNLAVTSQLSEFFYTIPQRAEGLIKQLKEQPSQLKEVYLEASRLEYWRASFMKALKTDQYGRWIGGGCLELAMQDPALLVRTLEVAELMRARLRQDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG 465
            LCREEDGRGLFGKYPHLKKLHHARTNLAVTSQLSEFFYTIPQRAEGLIKQLKEQPSQLKEVYLE SRLEYWRASFMKALKTDQYGRWIGGGCLELAMQDPALLVRTLEVAELMRARLRQDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG
Sbjct:   95 LCREEDGRGLFGKYPHLKKLHHARTNLAVTSQLSEFFYTIPQRAEGLIKQLKEQPSQLKEVYLEVSRLEYWRASFMKALKTDQYGRWIGGGCLELAMQDPALLVRTLEVAELMRARLRQDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG 249
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BLAST of mRNA_E-fasciculatus_F_contig14670.3351.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.710e-14
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  244 DQYGRWIGGGCLELAMQDPALLVRTLEVAELMRARLRQDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG 465
            D  G W GGGCLELAM DPA+LVRTLEVAEL+ AR ++ +  A+  A+  G DPD+AVAGL+  + + E +  G
Sbjct:  194 DSQGNWQGGGCLELAMTDPAMLVRTLEVAELISARAKRAYLTAREDAERKGIDPDDAVAGLEPPETMKEAVLSG 267
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BLAST of mRNA_E-fasciculatus_F_contig14670.3351.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.090e-13
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  355 QDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG 465
            +DWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG
Sbjct:   50 KDWDEAKRVAKETGGDPDEAVAGLQSADELFEEINKG 86
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BLAST of mRNA_E-fasciculatus_F_contig14670.3351.1 vs. uniprot
Match: A0A7S3HRG9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRG9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.380e-7
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   40 YPHLKKLHHARTNLAVTSQLSEFFYTIPQRAEGLIKQLKEQPSQLKEVYLEASRLEYWRASFMKALKTDQYGRWIGGGCL 279
            Y HLKK+ +AR NL+      EFF  +P+R E L +++   P+ LK+V+LEA +LE  R + MK ++  +  R   G CL
Sbjct:  106 YDHLKKVDNARENLSKVISQVEFFARVPERVEFLREKMDSSPASLKDVFLEAVKLESLRVALMKEIQVTRNRRISIGTCL 185
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14670.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5L8_ECTSI1.180e-10199.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNU2_9STRA2.710e-1454.05Exocyst complex component Sec6-domain-containing p... [more]
A0A6H5KMB3_9PHAE3.090e-1397.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3HRG9_9STRA3.380e-740.00Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14670contigE-fasciculatus_F_contig14670:294..2604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue4.1e-83
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size468
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14670.3351.1prot_E-fasciculatus_F_contig14670.3351.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14670 294..2604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.6812148-CDS-E-fasciculatus_F_contig14670:293..4391622927951.6812148-CDS-E-fasciculatus_F_contig14670:293..439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 294..439 +
1695995764.062044-CDS-E-fasciculatus_F_contig14670:293..4391695995764.062044-CDS-E-fasciculatus_F_contig14670:293..439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 294..439 +
1622927951.7030106-CDS-E-fasciculatus_F_contig14670:1049..11431622927951.7030106-CDS-E-fasciculatus_F_contig14670:1049..1143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 1050..1143 +
1695995764.0726912-CDS-E-fasciculatus_F_contig14670:1049..11431695995764.0726912-CDS-E-fasciculatus_F_contig14670:1049..1143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 1050..1143 +
1622927951.7169454-CDS-E-fasciculatus_F_contig14670:1747..18311622927951.7169454-CDS-E-fasciculatus_F_contig14670:1747..1831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 1748..1831 +
1695995764.0811677-CDS-E-fasciculatus_F_contig14670:1747..18311695995764.0811677-CDS-E-fasciculatus_F_contig14670:1747..1831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 1748..1831 +
1622927951.7450385-CDS-E-fasciculatus_F_contig14670:2460..26041622927951.7450385-CDS-E-fasciculatus_F_contig14670:2460..2604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 2461..2604 +
1695995764.0893729-CDS-E-fasciculatus_F_contig14670:2460..26041695995764.0893729-CDS-E-fasciculatus_F_contig14670:2460..2604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14670 2461..2604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14670.3351.1

>prot_E-fasciculatus_F_contig14670.3351.1 ID=prot_E-fasciculatus_F_contig14670.3351.1|Name=mRNA_E-fasciculatus_F_contig14670.3351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=156bp
LCREEDGRGLFGKYPHLKKLHHARTNLAVTSQLSEFFYTIPQRAEGLIKQ
LKEQPSQLKEVYLEASRLEYWRASFMKALKTDQYGRWIGGGCLELAMQDP
ALLVRTLEVAELMRARLRQDWDEAKRVAKETGGDPDEAVAGLQSADELFE
EINKG*
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mRNA from alignment at E-fasciculatus_F_contig14670:294..2604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14670.3351.1 ID=mRNA_E-fasciculatus_F_contig14670.3351.1|Name=mRNA_E-fasciculatus_F_contig14670.3351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2311bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14670:294..2604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGCCGAGAAGAGGACGGCCGGGGTCTTTTCGGGAAGTACCCGCACCT
GAAGAAGCTGCACCACGCTAGGACTAACCTGGCGGTCACGTCGCAGCTGT
CCGAGTTCTTCTACACCATCCCGCAGAGAGCCGAGGGCCTGATCAAGTGA
GATGGGTGCTAAATAGGGGTTTGCACACTCTTTGTTGTTGTTATTGTTGT
TATTGTTGGTGGTGGTGGTGGCGATGTTGGTGTTAATGTTGGTGTTGGTA
AAAGTCTCGCTCATGTTGTTGTTGTTTGGCAATCGTGTTGTTGTTATTGT
TGTTGGTGGTGGTGGTGATGTTGGTGTTAATGTTGGTGTTGGTATAATTC
TCGCTCATGTTGTTGTTGTTTGGCAATCGTGTTGTTGTTATTGTTGGTGG
TGGTGGTGGTGATGTTGGTATTTATGTTGGTGTTGGTATGATTCTCGCTG
ATGTTATTGTTGTTTGGCAATCGTGTTGTTGGTGTTGGTGTTGGTGTTGG
TGTTGTTTGTTGTATGCTCTTGTCGTTCTTGCATGAGATTCAAAACGCTT
GGGACGACAGACTGTGAAGCTATAACCAAGGTTTGTGTCCCTCTACCACG
AAGCGCGCTTAGGTTCGATACGAACGAACGTAAGAACAGCCGCGTTCTAG
CAAAAATTCGCAGAATAGTACCGAACATAGTTATTTGCAGAAGGGCAGCA
CGATGACCCGACATCAAACCACCCGTCGTCATCAACCTTGACGTCTAATG
TGCCAGGCAACTGAAAGAGCAACCGAGTCAGCTCAAGGAGGTCTATCTGG
AAGCCAGCAGGCTGGAGTACTGGCGCGCAAGCTTCATGAAGGCGCTAAAG
GTGAAGAGCCTGGGCAAGGAAAACTTTGCCGGGGGAGCTAGGGCGGGAGT
ATAGCAAGGCCTCTCGACTGAGGCCGGGAAGGGTGGGTACTTCGACTCAG
GCCACCTCCCCTAATGTGTAGGGGCGAGAAATATCTTCGCTGTGAGTGTA
AAACACCGGTCTCATGCATGCCAAAAACCCGCCCCAACGTCCCATTTTTC
ATGAACCCCATGCTTGTGTGCGTGTTCCGCTGCAGGAGTACGGCGAAAAG
GCGATGATCCAGCCGACCTTCCAGAGGACCAGGGGCGGCGCCGACTCGGT
CAAGTACCAGAGGATCGTAGAAAGGGTGGGGCCGCAGCTCAGCGTCGTGC
TTAATCTCAGCGTGGCCATCCGCGAGGCTATCATCGAGAACGTGGCCGGA
AGGGTAAGCAAGAGTGGGAAGAGGTGATGCCATAAACGTAACGGTTTGGG
AGGGCGGTACTCTGTAGCCGTGCATGCCGTTGTCGCTAGACCGTTGACCT
CGCATCCTTACGAAACCGGGACGGAGCACGCCGGGTTCTCGCGATAACCG
CCCACCTGGCTGCCCTTTTCGCGGACCCCCCCCTGCCCCCTCCCCCCCTC
GCAGACCGACCAGTACGGGCGATGGATTGGTGGGGGTTGTCTGGAGCTGG
CGATGCAGGATCCTGCCTTGCTCGTGCGGACTCTTGAGGTAAAGGATGTA
ACAATACCATGGACCACGGAAGGCATTTCTCTCTCTTCCTCTCTATTGTT
CGTTACCATTTTTTTTTTTTCTTGTCGCCGCGACAACTTTATTTTCCTTT
TCATGCTGGTAGTTTTTTTTTTCTATTTGCGTGTGTGTGTTGTTGTTTTG
TGTGCCTGCCTCTCGTTTCCACGGCTACGGCCTGTTCGGGTCGATTTTTC
TGTGTTCTTTGCCTCCCCGTTCTTATTTATTGCACGAATATGGCAACATA
GGGGGCTCCGTGGGTGACGTTCCAGAAGACCCCCCCAAGGTCGCGGTAGA
TTCATCCCGCCAGCGAGAGTGGGCAGGTTTTCTCCCCTGAAAACATGGAT
CCCACGCTTCCAATATACCGCTCCGTTGGGAAGTATAGGACCCATTGTGT
ATATTCACGCCTGTTTCCGAAATGGGCCTTATATAAAAAAAATATATATA
TATATATCGGACAGAGTGTTTCCCGTTATCCTCCAATATGGATCCAATCC
AAAGAGATATATAGAACCGTCGCTGGCGGCATCTACCTAAACGGCTGTGC
CCCCTTCTAACCGAAGATCCCCGATCCGGTTGGGGTTATGTTTGCCGCCG
TTGTCTTGTCCCGGGAGGTGGCCGAGCTGATGCGAGCGCGGCTGCGGCAG
GACTGGGACGAGGCCAAGCGGGTGGCGAAGGAGACCGGTGGAGACCCGGA
CGAGGCGGTGGCTGGGCTGCAGTCCGCGGACGAACTCTTCGAAGAGATCA
ACAAAGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14670:294..2604+

>mRNA_E-fasciculatus_F_contig14670.3351.1 ID=mRNA_E-fasciculatus_F_contig14670.3351.1|Name=mRNA_E-fasciculatus_F_contig14670.3351.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14670:294..2604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGCCGAGAAGAGGACGGCCGGGGTCTTTTCGGGAAGTACCCGCACCT
GAAGAAGCTGCACCACGCTAGGACTAACCTGGCGGTCACGTCGCAGCTGT
CCGAGTTCTTCTACACCATCCCGCAGAGAGCCGAGGGCCTGATCAACTTT
GCCGAGAAGAGGACGGCCGGGGTCTTTTCGGGAAGTACCCGCACCTGAAG
AAGCTGCACCACGCTAGGACTAACCTGGCGGTCACGTCGCAGCTGTCCGA
GTTCTTCTACACCATCCCGCAGAGAGCCGAGGGCCTGATCAAGCAACTGA
AAGAGCAACCGAGTCAGCTCAAGGAGGTCTATCTGGAAGCCAGCAGGCTG
GAGTACTGGCGCGCAAGCTTCATGAAGGCGCTAAAGGCAACTGAAAGAGC
AACCGAGTCAGCTCAAGGAGGTCTATCTGGAAGCCAGCAGGCTGGAGTAC
TGGCGCGCAAGCTTCATGAAGGCGCTAAAGACCGACCAGTACGGGCGATG
GATTGGTGGGGGTTGTCTGGAGCTGGCGATGCAGGATCCTGCCTTGCTCG
TGCGGACTCTTGAGACCGACCAGTACGGGCGATGGATTGGTGGGGGTTGT
CTGGAGCTGGCGATGCAGGATCCTGCCTTGCTCGTGCGGACTCTTGAGGT
GGCCGAGCTGATGCGAGCGCGGCTGCGGCAGGACTGGGACGAGGCCAAGC
GGGTGGCGAAGGAGACCGGTGGAGACCCGGACGAGGCGGTGGCTGGGCTG
CAGTCCGCGGACGAACTCTTCGAAGAGATCAACAAAGGGTGAGTGGCCGA
GCTGATGCGAGCGCGGCTGCGGCAGGACTGGGACGAGGCCAAGCGGGTGG
CGAAGGAGACCGGTGGAGACCCGGACGAGGCGGTGGCTGGGCTGCAGTCC
GCGGACGAACTCTTCGAAGAGATCAACAAAGGGTGA
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