mRNA_E-fasciculatus_F_contig14661.3345.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14661.3345.1
Unique NamemRNA_E-fasciculatus_F_contig14661.3345.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: D8LFL3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFL3_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.060e-31
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:   31 RRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNGGGAGVDQK 222
            RRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCS+DCANLHKRKLAADAAERRFNGG  GV QK
Sbjct:  655 RRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSTDCANLHKRKLAADAAERRFNGGSGGVGQK 718
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: W2RE76_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RE76_PHYPN)

HSP 1 Score: 62.0 bits (149), Expect = 1.780e-9
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   13 EAEAEDRRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            EAE ++  +R +AA   CD CGK    K  F+R EF+YCS+DC N HKRKL  +AA RR  G
Sbjct:  526 EAERQEELERKIAAGMACDFCGK-YAGKSPFTRLEFKYCSTDCVNDHKRKLMREAALRRLGG 586
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: A0A8J5JB74_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JB74_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.470e-9
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   13 EAEAEDRRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRF 192
            EAE ++  +R +AA   CD CGK    K  FSR EF+YCS+DC N HKRKL ++AA RR 
Sbjct:  525 EAERQEELERKIAAGLACDFCGK-YAGKSPFSRLEFKYCSTDCVNGHKRKLMSEAALRRL 583
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: D0N2U5_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2U5_PHYIT)

HSP 1 Score: 61.2 bits (147), Expect = 3.310e-9
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   19 EAEDRRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            E ++  +R +AA   CD CGK    K  F+R EF+YCS+DC N HKRKL ++AA RR  G
Sbjct:  490 ERQEEMERKIAAGLACDFCGK-YAGKSPFTRLEFKYCSTDCVNAHKRKLMSEAALRRLGG 548
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: K3WKI9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKI9_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 4.550e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   40 RGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            R +AA   CD CGK    K  F R E++YCS++C N+HKRKL ++AA RRF G
Sbjct:  564 RQIAAGKACDCCGK-YAGKTPFLRLEYKYCSTECVNVHKRKLMSEAALRRFGG 615
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: A0A2D4BYG9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYG9_PYTIN)

HSP 1 Score: 60.1 bits (144), Expect = 8.460e-9
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 QEKEEAEAEDRRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            Q+++E E    R+R +AA   CD CG+    K  F+R EF+YCS+DC N H+RKL ++AA +R  G
Sbjct:  484 QKRKEEEERVERERKIAAGQACDFCGQ-FAGKSPFTRLEFKYCSTDCVNNHRRKLMSEAALKRLGG 548
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: A0A225X545_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X545_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.050e-8
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   40 RGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            R +AA   CD CGK    K  F+R E++YCS+DC N HKRKL ++AA RR  G
Sbjct:  524 RKIAAGLACDFCGK-YAGKSPFTRLEYKYCSTDCVNGHKRKLMSEAALRRLGG 575
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: A0A662XA34_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XA34_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.620e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   40 RGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRF 192
            R +AA   CD CGK    K  F+R EF+YCS+DC N HKRKL ++AA RR 
Sbjct:  553 RKIAAGLACDFCGK-YAGKSPFTRLEFKYCSTDCVNGHKRKLMSEAALRRL 602
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: H3GCM0_PHYRM (Calponin-homology (CH) domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCM0_PHYRM)

HSP 1 Score: 57.4 bits (137), Expect = 7.660e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   40 RGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRF 192
            R +AA   CD CGK    K  F+R EF+YCS+DC N HKRKL ++AA RR 
Sbjct:  540 RKIAAGLACDFCGK-YAGKSPFTRLEFKYCSTDCVNGHKRKLMSEAALRRL 589
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Match: M4B963_HYAAE (VATC domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B963_HYAAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.450e-7
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   40 RGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANLHKRKLAADAAERRFNG 198
            R +AA   CD CGK    K   +R E++YCS++C N HKRKL ++AA RR  G
Sbjct:  103 RKVAAGLACDLCGK-YAGKSPLTRLEYKYCSTECVNGHKRKLMSEAALRRLGG 154
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14661.3345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LFL3_ECTSI2.060e-3193.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W2RE76_PHYPN1.780e-951.61Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A8J5JB74_9STRA2.470e-953.33Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
D0N2U5_PHYIT3.310e-950.00Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
K3WKI9_GLOUD4.550e-952.83Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BYG9_PYTIN8.460e-945.45Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A225X545_9STRA4.050e-852.83Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662XA34_9STRA7.620e-854.90Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
H3GCM0_PHYRM7.660e-854.90Calponin-homology (CH) domain-containing protein n... [more]
M4B963_HYAAE2.450e-749.06VATC domain-containing protein n=1 Tax=Hyaloperono... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14661contigE-fasciculatus_F_contig14661:3031..3255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D8LFL3
Preferred nameANKZF1
KEGG koko:K15271
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009636,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019867,GO:0019941,GO:0030163,GO:0030425,GO:0030433,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034976,GO:0035690,GO:0035966,GO:0035967,GO:0036266,GO:0036477,GO:0036503,GO:0042175,GO:0042221,GO:0042493,GO:0042542,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044463,GO:0044464,GO:0046677,GO:0050896,GO:0051603,GO:0051716,GO:0051788,GO:0070301,GO:0070887,GO:0071218,GO:0071236,GO:0071310,GO:0071630,GO:0071704,GO:0072671,GO:0097237,GO:0097447,GO:0097458,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:0098827,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701
EggNOG free text desc.mitochondria-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2505@1,KOG2505@2759
EC3.6.4.12
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.9218225-CDS-E-fasciculatus_F_contig14661:3030..32551622927950.9218225-CDS-E-fasciculatus_F_contig14661:3030..3255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 3031..3255 -
1695995763.6297739-CDS-E-fasciculatus_F_contig14661:3030..32551695995763.6297739-CDS-E-fasciculatus_F_contig14661:3030..3255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 3031..3255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14661.3345.1prot_E-fasciculatus_F_contig14661.3345.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14661 3031..3255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14661.3345.1

>prot_E-fasciculatus_F_contig14661.3345.1 ID=prot_E-fasciculatus_F_contig14661.3345.1|Name=mRNA_E-fasciculatus_F_contig14661.3345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp
QEKEEAEAEDRRKRGLAAAGHCDACGKALVAKKAFSRFEFRYCSSDCANL
HKRKLAADAAERRFNGGGAGVDQK*
back to top

mRNA from alignment at E-fasciculatus_F_contig14661:3031..3255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14661.3345.1 ID=mRNA_E-fasciculatus_F_contig14661.3345.1|Name=mRNA_E-fasciculatus_F_contig14661.3345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14661:3031..3255- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGAAAGAGGAAGCGGAAGCGGAGGACAGGCGCAAGAGGGGTCTGGC
GGCTGCAGGGCACTGCGATGCGTGCGGCAAGGCGTTGGTAGCGAAGAAAG
CGTTCAGCCGCTTCGAGTTCCGTTACTGCAGTTCGGACTGCGCCAACCTG
CACAAGCGAAAGCTCGCGGCAGACGCCGCAGAGCGAAGGTTTAACGGCGG
CGGCGCCGGGGTCGATCAAAAGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14661:3031..3255-

>mRNA_E-fasciculatus_F_contig14661.3345.1 ID=mRNA_E-fasciculatus_F_contig14661.3345.1|Name=mRNA_E-fasciculatus_F_contig14661.3345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14661:3031..3255- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGAAAGAGGAAGCGGAAGCGGAGGACAGGCGCAAGAGGGGTCTGGC
GGCTGCAGGGCACTGCGATGCGTGCGGCAAGGCGTTGGTAGCGAAGAAAG
CGTTCAGCCGCTTCGAGTTCCGTTACTGCAGTTCGGACTGCGCCAACCTG
CACAAGCGAAAGCTCGCGGCAGACGCCGCAGAGCGAAGGTTTAACGGCGG
CGGCGCCGGGGTCGATCAAAAGTGACAGGAGAAAGAGGAAGCGGAAGCGG
AGGACAGGCGCAAGAGGGGTCTGGCGGCTGCAGGGCACTGCGATGCGTGC
GGCAAGGCGTTGGTAGCGAAGAAAGCGTTCAGCCGCTTCGAGTTCCGTTA
CTGCAGTTCGGACTGCGCCAACCTGCACAAGCGAAAGCTCGCGGCAGACG
CCGCAGAGCGAAGGTTTAACGGCGGCGGCGCCGGGGTCGATCAAAAGTGA
back to top