mRNA_E-fasciculatus_F_contig14607.3318.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14607.3318.1
Unique NamemRNA_E-fasciculatus_F_contig14607.3318.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A6H5KK91_9PHAE (Abhydrolase_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK91_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 5.460e-58
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVLPDGQ 273
            GCVACSTW+PLNKDYPTALGSAAKDIPVAQFHGTRDEVV+FTWGQHSHILMKEKLGMT TFEAITGMGHSSSN EMESVADFLKRVLPDGQ
Sbjct:  193 GCVACSTWIPLNKDYPTALGSAAKDIPVAQFHGTRDEVVQFTWGQHSHILMKEKLGMTTTFEAITGMGHSSSNAEMESVADFLKRVLPDGQ 283          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A836CN32_9STRA (Lysophospholipase-like protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN32_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.020e-17
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAK-DIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKR 255
            GCVACS W+PL K+YP ALG  AK  + V Q HG  D VVR  WG  S+  +K  +G+ A  E   GMGHS+   E+E V+ F+++
Sbjct:  133 GCVACSGWLPLAKEYPAALGDGAKAGLKVLQCHGDADVVVRHHWGSQSYNALKA-MGIAAELETYRGMGHSAIPDELERVSAFIQQ 217          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A7S0SWW0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWW0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-14
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKL-GMTATFEAITGMGHSSSNGEMESVADFL 249
            GC+A S+W+P NKDYP+ L  ++K +P+ Q HG  D VV+F WG H+H  + E +     TF  I   GH     E   +  F+
Sbjct:  122 GCIAFSSWLPFNKDYPSVLSDSSKTLPIVQVHGDNDYVVQFKWGSHTHKFLSEIITNPPPTFVKIPKHGHGFHPDETNILKSFI 205          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A654HD33_9CEST (Palmitoyl-protein hydrolase n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HD33_9CEST)

HSP 1 Score: 66.2 bits (160), Expect = 3.720e-11
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDY--PTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVLP 264
            G VA S W+PL+  +     L  A K +P+ Q HGT D +V F  G  ++ +MK       T   I GMGH+SS  E++ V  FL   LP
Sbjct:  134 GVVALSCWLPLHTKFIQNPNLAQADKSLPIFQCHGTMDPIVPFDMGSETNTMMKNMGFSNITLSKIPGMGHTSSERELDLVKSFLNERLP 223          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: G4THL5_SERID (Related to lysophospholipase n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4THL5_SERID)

HSP 1 Score: 65.9 bits (159), Expect = 6.450e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAI--------TGMGHSSSNGEMESVADFLKRVLP 264
            G  A S W+PL+    + +   A+ +P+   HGT D VV++ +G+ S+ L+K      AT E+I         GMGHSSS  E++ +A +L RV+P
Sbjct:  145 GIFALSGWLPLSGKIKSMMSDRAQSLPIFFGHGTSDPVVQYKYGKQSYNLLKSLGFQDATAESIKGLSWQEYAGMGHSSSPRELQDIASWLARVVP 240          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A0X3PRN5_SCHSO (Palmitoyl-protein hydrolase n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PRN5_SCHSO)

HSP 1 Score: 63.9 bits (154), Expect = 2.820e-10
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTA--LGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVLP 264
            G VA S W+PL+  +     L  A K +P+ Q HGT D +V F  G  +  ++K      ++   I GMGHSSS+ E+E V +F    LP
Sbjct:  136 GVVALSCWLPLHARFMQNPNLVEADKSLPIFQCHGTMDPIVPFEMGSETSTILKNMGFSKSSLTKIPGMGHSSSDRELEMVREFFNEKLP 225          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A8J2P661_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P661_9HEXA)

HSP 1 Score: 63.5 bits (153), Expect = 3.570e-10
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVL 261
            G VA S+W+PLN+ + + L    K   V Q HG  D +V +T+G  +  L+K + G   TF+  +G+GHSSS  E+E V  F + VL
Sbjct:  133 GIVALSSWLPLNRQFASWLKQ--KSTQVLQCHGDIDPIVMYTFGLATSQLLKTQCGKF-TFKTYSGLGHSSSETELEDVKKFFQDVL 216          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A2Z6QJ85_9GLOM (Abhydrolase_2 domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6QJ85_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 4.320e-9
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVLPD 267
            G +  S ++PL +   T    A K+ P+   HG RD VV +  G+ S+ L+K +     TF    GMGH SS  E+E +  FL+ V+PD
Sbjct:  141 GIIGLSGYIPLKEKTFTMATDANKNTPIFLGHGDRDLVVPYQIGKLSYDLIKSR-EYPVTFRTYNGMGHHSSQKEIEDMISFLQEVIPD 228          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: UPI000440A7FE (Phospholipase/carboxylesterase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440A7FE)

HSP 1 Score: 56.6 bits (135), Expect = 1.720e-7
Identity = 29/105 (27.62%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGM-TAT-------------FEAITGMGHSSSNGEMESVADFLKRVLPDGQ 273
            G  + S W+ + + +    G  AK++P+   HGT D +V++  G  S    + ++G+ TA+             F + +G+GHS+++ E++ +  +LK+VLP  Q
Sbjct:  139 GIASLSGWLLMRRTFKAMAGRHAKELPIFWGHGTHDPLVKYHLGVESVAAFRSQIGIGTASLDAPDAEGLKGISFNSYSGLGHSTTDKELDDLRGWLKKVLPQEQ 243          
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Match: A0A1X2IKS0_9FUNG (Phospholipase/carboxylesterase/thioesterase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IKS0_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 2.130e-6
Identity = 24/87 (27.59%), Postives = 43/87 (49.43%), Query Frame = 1
Query:    1 GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHILMKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVL 261
            G +    W+P      +      K  P+   HG  DEVV++ + Q +   + +K+G    F+   G+GH+SS  +M+ +  F++R L
Sbjct:  139 GIIGAGGWLPKGDKILSLTSETNKQTPILLCHGDEDEVVKYQYSQATGRFL-QKMGYQVDFKTYQGLGHTSSEEQMQDIGVFIQRQL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14607.3318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KK91_9PHAE5.460e-5895.60Abhydrolase_2 domain-containing protein n=2 Tax=Ec... [more]
A0A836CN32_9STRA5.020e-1747.67Lysophospholipase-like protein II n=1 Tax=Tribonem... [more]
A0A7S0SWW0_9STRA1.270e-1439.29Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A654HD33_9CEST3.720e-1138.89Palmitoyl-protein hydrolase n=1 Tax=Sparganum prol... [more]
G4THL5_SERID6.450e-1136.46Related to lysophospholipase n=1 Tax=Serendipita i... [more]
A0A0X3PRN5_SCHSO2.820e-1037.78Palmitoyl-protein hydrolase n=1 Tax=Schistocephalu... [more]
A0A8J2P661_9HEXA3.570e-1040.23Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A2Z6QJ85_9GLOM4.320e-937.08Abhydrolase_2 domain-containing protein n=7 Tax=Rh... [more]
UPI000440A7FE1.720e-727.62Phospholipase/carboxylesterase n=1 Tax=Stereum hir... [more]
A0A1X2IKS0_9FUNG2.130e-627.59Phospholipase/carboxylesterase/thioesterase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14607contigE-fasciculatus_F_contig14607:1604..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.2e-44
Seed eggNOG ortholog2880.D7FSL3
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
EggNOG free text desc.acyl-protein thioesterase
EggNOG OGsCOG0400@1,KOG2112@2759
EC3.1.1.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14607.3318.1prot_E-fasciculatus_F_contig14607.3318.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14607 1604..3077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.5433717-CDS-E-fasciculatus_F_contig14607:1603..16681622927947.5433717-CDS-E-fasciculatus_F_contig14607:1603..1668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 1604..1668 -
1695995762.0125308-CDS-E-fasciculatus_F_contig14607:1603..16681695995762.0125308-CDS-E-fasciculatus_F_contig14607:1603..1668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 1604..1668 -
1622927947.558742-CDS-E-fasciculatus_F_contig14607:2147..22181622927947.558742-CDS-E-fasciculatus_F_contig14607:2147..2218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 2148..2218 -
1695995762.0260043-CDS-E-fasciculatus_F_contig14607:2147..22181695995762.0260043-CDS-E-fasciculatus_F_contig14607:2147..2218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 2148..2218 -
1622927947.5722427-CDS-E-fasciculatus_F_contig14607:2937..30771622927947.5722427-CDS-E-fasciculatus_F_contig14607:2937..3077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 2938..3077 -
1695995762.0356324-CDS-E-fasciculatus_F_contig14607:2937..30771695995762.0356324-CDS-E-fasciculatus_F_contig14607:2937..3077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14607 2938..3077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14607.3318.1

>prot_E-fasciculatus_F_contig14607.3318.1 ID=prot_E-fasciculatus_F_contig14607.3318.1|Name=mRNA_E-fasciculatus_F_contig14607.3318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
GCVACSTWVPLNKDYPTALGSAAKDIPVAQFHGTRDEVVRFTWGQHSHIL
MKEKLGMTATFEAITGMGHSSSNGEMESVADFLKRVLPDGQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig14607:1604..3077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14607.3318.1 ID=mRNA_E-fasciculatus_F_contig14607.3318.1|Name=mRNA_E-fasciculatus_F_contig14607.3318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14607:1604..3077- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGCGTGGCGTGCAGCACCTGGGTCCCCCTCAACAAGGACTACCCGAC AGCCCTAGGCAGTGCGGCCAAGGACATTCCCGTGGCACAGTTCCACGGAA CGCGGGACGAAGTGGTGCGGTTCACGTGGGGCCAACATAGGTGAGCGGTA CACAGCAGCAGCGGCAACGGTTCAGGAGACGTTTTTTTTTAACCGCATCT CCAGCGGACCTTTTGTCCTGTACATGAAAGGAGGTCGCCATGCCCAAGGT AATCCTTATCCTTGTCAAGTGGGAGCGGCAAGTTCCGATCCGACATCTAC CCCAAAGGTTGCTTTGGATACCACACCCCCTGGACCGATTTTTCAAAGCT AAACTACTCTGGAGCAAACACCGTCTTCGTCGAGATTCCTCCCAAAACGC ATCGTTTTATCTTTAGCCCCTTGCGGTTTATCTTTAGCGCCTTGTCCGTC GTGGCAAAATCAAGCTTTGTGTCGGTCTAGGCGGGTGTGGTATCTTGCGC GCAGCCTATGGTACAACGGTTTGCGCTTTTGAAGCATTTCAGAACTTGCC TGTGACGCCATTGATTTAGCCTCCAAAACATCAAAATTTCAGCACCACTT TTTTGTGAGCTCGTTTATGAACCCACACTTCAACCTATTTTGCGGCCATT CGTAGCCCAACCCCAGGAACACCCCCAGTCTCGGCTAAGAGTAGAGGTTA GTAGGTTTGTTTTCGTCCAATTTATGAGAGAAGAGAAAAACATTTGTGGC ACGCGATTCGCTGATTGGTCGCGCTAACTCTGTGTTGTCTGATACATTCC CACTCGACGTTCCACGTATAACCCTGATGCGTGTTCCCTGTGCTCCTCCT TGCCTGCAGTCACATCCTGATGAAGGAGAAGCTTGGCATGACCGCCACGT TCGAGGCGATAACTGGCATGGGACATTCATGTGCGATCTCGGTGCTTTTG TTGATGATTGATACTTGTATTGGTGTTGTCGTTGCTGTTGCTATTGTGGT AGGTGTTGTTATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTAT TTTTTAGTTGTTGTTCCCGCTGTTGCTGCTACTACTACCACTGCTGCTGT TGTTGTTTCTGTTGCTGGTATTGTTGTTGCTGCTGCTGTGTCTCTTCCCC ACGCCCCTCAAGTGCAGCTTACCAAGTAAAATGTTTGTTCTGTCTTTTGT GACCACTGGGATGGTGTGTCGTACCATATGCCTTGGCTGGTACAAATGAG GTTAAGTCGCATGAAAGTCGAAATGTTCTCCTTGGCCATAAAGTCAGCAC CAACGATAGCAGCACCGTCAACAACAACAACTTTCCCCGCTTCCCTCTTG CACAATCGCTGCGCGCTCTTTCGACGTCGGAACCAATCGCCTGGTCCATC CATGACCAGCGAGCAATGGTGAAATGGAGAGCGTCGCGGACTTCCTCAAG AGAGTGCTGCCGGACGGCCAATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14607:1604..3077-

>mRNA_E-fasciculatus_F_contig14607.3318.1 ID=mRNA_E-fasciculatus_F_contig14607.3318.1|Name=mRNA_E-fasciculatus_F_contig14607.3318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14607:1604..3077- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGCGTGGCGTGCAGCACCTGGGTCCCCCTCAACAAGGACTACCCGAC
AGCCCTAGGCAGTGCGGCCAAGGACATTCCCGTGGCACAGTTCCACGGAA
CGCGGGACGAAGTGGTGCGGTTCACGTGGGGCCAACATAGGGTTGCGTGG
CGTGCAGCACCTGGGTCCCCCTCAACAAGGACTACCCGACAGCCCTAGGC
AGTGCGGCCAAGGACATTCCCGTGGCACAGTTCCACGGAACGCGGGACGA
AGTGGTGCGGTTCACGTGGGGCCAACATAGTCACATCCTGATGAAGGAGA
AGCTTGGCATGACCGCCACGTTCGAGGCGATAACTGGCATGGGACATTCA
TTCACATCCTGATGAAGGAGAAGCTTGGCATGACCGCCACGTTCGAGGCG
ATAACTGGCATGGGACATTCATCGAGCAATGGTGAAATGGAGAGCGTCGC
GGACTTCCTCAAGAGAGTGCTGCCGGACGGCCAATAGCGAGCAATGGTGA
AATGGAGAGCGTCGCGGACTTCCTCAAGAGAGTGCTGCCGGACGGCCAAT
AG
back to top