mRNA_E-fasciculatus_F_contig14594.3308.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14594.3308.1
Unique NamemRNA_E-fasciculatus_F_contig14594.3308.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14594.3308.1 vs. uniprot
Match: A0A6H5KY22_9PHAE (Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY22_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.540e-49
Identity = 105/137 (76.64%), Postives = 109/137 (79.56%), Query Frame = 1 
Query:    1 EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPKLKPLLKGLNRNCEYYRQEGLRLEQQRLSSASGSRRPQHQGQKGEGGGSRGXXXXXXXXXXXXXXCXXEGVGKEAAVKAGGRERHANPNDGGGG 411
            EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFP+LKPLLKGLNRNCEYYRQEGLRLEQQRLS+ASGSRRPQ  GQ+G G  + G                  GVGKEAA  A GRER ANPNDGGGG
Sbjct:  981 EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPELKPLLKGLNRNCEYYRQEGLRLEQQRLSAASGSRRPQQNGQEGGGSSTSGDKNGVHGDNDVGADA---GVGKEAAAMACGRERQANPNDGGGG 1114
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BLAST of mRNA_E-fasciculatus_F_contig14594.3308.1 vs. uniprot
Match: D7G095_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G095_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 7.510e-41
Identity = 115/155 (74.19%), Postives = 118/155 (76.13%), Query Frame = 1 
Query:    1 EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPKLKPLLKGLNRNCEYYRQEGLRLEQQRLSSASGSRRPQHQ----------GQKGEGGGSRGXXXXXXXXXXXXXXCXXE--------GVGKEAAVKAGGRERHANPNDGGGG 411
            EANTGLPRTTVASGDLETTIKGQ FFAEKIVKPLWEPFVALFPKLKPLLK LNRNCEYYRQEGLRLE+QRLS+AS SRRPQ               G+  G   XXXXXXXXXXXXXX XX         GVGKEA  KAGGRER AN NDGGGG
Sbjct:  730 EANTGLPRTTVASGDLETTIKGQHFFAEKIVKPLWEPFVALFPKLKPLLKSLNRNCEYYRQEGLRLERQRLSAASDSRRPQXXXXXXXXXXXXSTSGDKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVGKEAVAKAGGRERQANCNDGGGG 884
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BLAST of mRNA_E-fasciculatus_F_contig14594.3308.1 vs. uniprot
Match: D7G099_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G099_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.070e-23
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPKLKPLLKGLNRNCEYYRQEGLRLEQQRLS--SASGSRRPQHQGQK 258
            E   GLP TTVASGD ETT+KGQ FFA KIVKPLW+PF  LFPKL PLL+ LN NC+YY QE LRLEQQRLS  SAS +  PQ  G++
Sbjct: 1052 EGTAGLPLTTVASGDRETTMKGQHFFATKIVKPLWQPFAVLFPKLAPLLENLNNNCDYYHQEWLRLEQQRLSASSASNADSPQRAGEE 1139
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BLAST of mRNA_E-fasciculatus_F_contig14594.3308.1 vs. uniprot
Match: A0A7S3UUD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUD2_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 2.970e-6
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    1 EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPKLKPLLKGLNRNCEYYRQEGLRLEQQRLSSASGSRRP 240
            E   GLP T          +KGQ FF EKI+ PL++  VA+FP+ K   K L  N  YY  E  RL+Q+     +G+R P
Sbjct:   58 EDRLGLPLTFARGSTELELVKGQIFFIEKILDPLFQALVAIFPRCKAFTKNLRDNQRYYAHESKRLQQKEEDIKAGTRSP 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14594.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KY22_9PHAE1.540e-4976.64Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D7G095_ECTSI7.510e-4174.19Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
D7G099_ECTSI2.070e-2368.18Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3UUD2_HETAK2.970e-640.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14594contigE-fasciculatus_F_contig14594:146..2915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue3.3e-39
Seed eggNOG ortholog2880.D7G095
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1888
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14594.3308.1prot_E-fasciculatus_F_contig14594.3308.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14594 146..1442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927946.0410528-CDS-E-fasciculatus_F_contig14594:145..2321622927946.0410528-CDS-E-fasciculatus_F_contig14594:145..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14594 146..232 +
1695995761.169077-CDS-E-fasciculatus_F_contig14594:145..2321695995761.169077-CDS-E-fasciculatus_F_contig14594:145..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14594 146..232 +
1622927946.112302-CDS-E-fasciculatus_F_contig14594:1115..14421622927946.112302-CDS-E-fasciculatus_F_contig14594:1115..1442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14594 1116..1442 +
1695995761.1846757-CDS-E-fasciculatus_F_contig14594:1115..14421695995761.1846757-CDS-E-fasciculatus_F_contig14594:1115..1442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14594 1116..1442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927946.1277595-UTR-E-fasciculatus_F_contig14594:1442..29151622927946.1277595-UTR-E-fasciculatus_F_contig14594:1442..2915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14594 1443..2915 +
1695995761.197407-UTR-E-fasciculatus_F_contig14594:1442..29151695995761.197407-UTR-E-fasciculatus_F_contig14594:1442..2915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14594 1443..2915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14594.3308.1

>prot_E-fasciculatus_F_contig14594.3308.1 ID=prot_E-fasciculatus_F_contig14594.3308.1|Name=mRNA_E-fasciculatus_F_contig14594.3308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
EANTGLPRTTVASGDLETTIKGQRFFAEKIVKPLWEPFVALFPKLKPLLK
GLNRNCEYYRQEGLRLEQQRLSSASGSRRPQHQGQKGEGGGSRGGEKSGG
HGGNDGGACGGEGVGKEAAVKAGGRERHANPNDGGGG*
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mRNA from alignment at E-fasciculatus_F_contig14594:146..2915+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14594.3308.1 ID=mRNA_E-fasciculatus_F_contig14594.3308.1|Name=mRNA_E-fasciculatus_F_contig14594.3308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2770bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14594:146..2915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGCTAACACGGGCTTGCCCCGGACAACGGTGGCCAGCGGAGACCTGGA
GACCACGATAAAGGGGCAGCGCTTCTTTGCAGAGAAGGTATGCCAGGTTC
TTGGACCCGGAGGGTCGTTTTTGCACTCGCCACGAACGAACGAACGAACG
AACGAACGAGCGGGGTCGGGGCGGGCGAAGACTAACGTCACACGCATGGA
AGGCTCCGTCACTCACCCGAGGCTCCGTCGGATGTACAAGAAGGGCTTGT
TCTCTCTCTCTTTTTATTATTCTTGTTGATGCAATGGTTGCGGCATTCTT
CTTTCCGCTACATACGCTCTGCTTGGGCAATTCGTTGCGGCACTTTTTTT
TGTTACGCTCCGCTGGGGACAGCGTTCTGCTGCCTCACATGCCACGTACC
CACGCCAACCTGGACGGAGCAGCACTAGTAGTGGCGTTTCTTTCACCAGT
CGGTCGAGTGTTGTTCTATCGATGTAGCTTGCGCTCGACGGCGAACGCAT
GGCTAGCGAGTTTGTCCACAAGGACTTGTAGCGAGCAGCTAGCTAGCTGC
CGGGCAGAGTAGCCACACCCAACCAACCATGCCATGAGTCAGTGCACTCC
ACTTGTCTTCGTGCCTTTTCCCGGTTCTCAGGTTGCTTTGGCGATTCCAC
GGCCAGCTAAGCGTCGTCAGGAGCGTAACCTTGGTCACATCGGGCGGTCC
GCGGCGATGAAAAACACCCAGCATGTCACCTCTTTTCCTAGTTCATCAAA
AATCTCCTAAAACTCCTCCGTCACCCGCTTGTGGTTTTCCATACCCCCCT
CCTGCCTCCCCCATGCTCCGTCCTCTCGAGAGGACGCGTGGTCAATGGTC
AAATATCTAAGGCATGCAAAACATGACAGTACGCCCCCCCCCCCCCCCCC
CCCCCCCCCNNNNNNNNNNCCCCCCCTCGTCGCCTGCATATATCTACCCG
TATCCCCGTACGTACCGCAGATCGTGAAGCCTCTGTGGGAGCCTTTCGTC
GCCCTGTTTCCCAAGCTCAAGCCCCTCCTCAAGGGACTCAACAGGAACTG
CGAGTACTACCGTCAGGAGGGACTGCGGCTTGAGCAGCAACGACTCTCGT
CCGCCTCCGGCTCCCGACGCCCACAACATCAAGGACAGAAAGGAGAAGGA
GGAGGCAGTAGAGGCGGCGAAAAGAGTGGTGGTCACGGCGGCAACGACGG
CGGCGCCTGCGGCGGCGAAGGCGTAGGGAAGGAAGCCGCGGTAAAGGCCG
GCGGGCGAGAGCGACATGCCAACCCGAACGACGGCGGTGGTGGCTGAGCA
TCGAGATGTACAGTCAGTCCACTCGCTCACCGATAAAAACCTGGGCAGAT
CAGGTGCGTGCGGCTGCAGTCTTGGGGGGCGGCGAGCTGGGGGGAACGAG
GGGATCAGGACGACCAGGTGTTTTAGAGGCGTGGGTGGAGGCATTTATCG
ACTGGTGTAGTAGCGGAGAGTTTGGTGGCCCTGGCCTCTTACCGCTGTGT
AACAAGTTGTGGTTGATGGAGGACGACCACGGGTTTCCATCTCTATCGAG
ACGATGGCGTGAAGCATGCGGGGCGACCCGAGGCTGTTCCGTTACCGGTG
CAAGGAACGAACATCAGCCGAATTTGTGGGATGTAAATGTTGTTAAAACC
TAAACGTAGCTCTCGGAGAAACACCCGGGAAAGATATATTTATGTGTTTT
GTGCAAAAATCAGGCTGACACAGGAATAGCTCGTCGCTAAGGTAAATAGC
GCAGAATCGAACCCTAGAACGTACTGCACGCTTCGGCGTGACTTGCACGT
GTCCGCTTGCGATTGTGTGCGAAGGTGTGTTGTATGTGTTCGCGTGCGTC
TTGCACATACCAGTGAACGGGGCAAGTTTTGTAGTTATGCCCGCAGCAAA
GTACTACAGCTGGCTGCCTTTACGCATCCGATGTGTTGATGGAAGTATTA
GTTGAACAGTGGTAACAAAAACACTCTCTCGTACACTTTTTTACGCTAAT
GACGCGGTGTACGCGCCGCCTTGCCTCAGAAGTCAAAGGCGTTGCTGGCG
TTTTTTGTTGTTGCGTCACGAGATTTTGATGTTCTTTCATTGTCTCGGGG
GAAGAAACTATCGTTGTGTGTGTCGTGGGCGCAGCAGGCGGCCCCACCCG
CTGGAATTTCATCGTGCATGAAGCTGTCGTGGTACTTTAGATAGAAATGT
TCTGGTGTTCGGCGTTGGTTCGATCGATCAGATGGAAGAATTTTTAATCA
ATGCGTGCGGCGAGCTTCATTTTAACGTAGCATAGAAGATGGGTTTTGTG
GTGGTTGTGGTTGTTGTTGTGGTTGTTGTGGTTGAGATGTTTGCGGTTAA
ATACGAGGGTGGTAGTGGTAGACTAGGTAGTAGTCGTTTTGGCGAGGCGA
TCAAACCACGGGAACGGGTTGTTTCGCACGTGAAGCAATCAGACATATTT
TTGTAATATAGGGGCTAACTCGTTCATTCATGGATTCTCAGTCAGTCAGA
TATGTATGCAAGAAGGAACGGGACGAGACGTTTTTTTTGTATGGGATCGT
CCAGTATGTACAGCAGTACTCATCTGTCCCTCAATGTCTGTAGCGCTTGT
TTTTCACTAGTAGTTAACCGTGTCCGATGCCTCTCCGCAGCAGAGGCTAC
TACTGTGGATGGGGCCGCCACTGCTCGCCGTGGATCGTTTTATTTGTTTC
AGGAGTGGGGGTGCTTACACAGTAGAATTTTGTCGTGCGAGCGCGCAAAA
TGAAGGGCCAAATGAAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14594:146..2915+

>mRNA_E-fasciculatus_F_contig14594.3308.1 ID=mRNA_E-fasciculatus_F_contig14594.3308.1|Name=mRNA_E-fasciculatus_F_contig14594.3308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14594:146..2915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGCTAACACGGGCTTGCCCCGGACAACGGTGGCCAGCGGAGACCTGGA
GACCACGATAAAGGGGCAGCGCTTCTTTGCAGAGAAGGAGGCTAACACGG
GCTTGCCCCGGACAACGGTGGCCAGCGGAGACCTGGAGACCACGATAAAG
GGGCAGCGCTTCTTTGCAGAGAAGATCGTGAAGCCTCTGTGGGAGCCTTT
CGTCGCCCTGTTTCCCAAGCTCAAGCCCCTCCTCAAGGGACTCAACAGGA
ACTGCGAGTACTACCGTCAGGAGGGACTGCGGCTTGAGCAGCAACGACTC
TCGTCCGCCTCCGGCTCCCGACGCCCACAACATCAAGGACAGAAAGGAGA
AGGAGGAGGCAGTAGAGGCGGCGAAAAGAGTGGTGGTCACGGCGGCAACG
ACGGCGGCGCCTGCGGCGGCGAAGGCGTAGGGAAGGAAGCCGCGGTAAAG
GCCGGCGGGCGAGAGCGACATGCCAACCCGAACGACGGCGGTGGTGGCTG
AATCGTGAAGCCTCTGTGGGAGCCTTTCGTCGCCCTGTTTCCCAAGCTCA
AGCCCCTCCTCAAGGGACTCAACAGGAACTGCGAGTACTACCGTCAGGAG
GGACTGCGGCTTGAGCAGCAACGACTCTCGTCCGCCTCCGGCTCCCGACG
CCCACAACATCAAGGACAGAAAGGAGAAGGAGGAGGCAGTAGAGGCGGCG
AAAAGAGTGGTGGTCACGGCGGCAACGACGGCGGCGCCTGCGGCGGCGAA
GGCGTAGGGAAGGAAGCCGCGGTAAAGGCCGGCGGGCGAGAGCGACATGC
CAACCCGAACGACGGCGGTGGTGGCTGA
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