mRNA_E-fasciculatus_F_contig14590.3306.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI) HSP 1 Score: 485 bits (1248), Expect = 1.450e-159 Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 3
Query: 3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPC+CGRSGRPTRARCCHKTPDS GGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWST MLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR
Sbjct: 711 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCNCGRSGRPTRARCCHKTPDSRGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 952
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A662XL21_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL21_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.910e-52 Identity = 103/235 (43.83%), Postives = 145/235 (61.70%), Query Frame = 3
Query: 30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
K D VVFCDL+ Q Y+R+L++PEF+LL R +EPCDCGR + R +CC++TP S G D RA+L+ R HP C CP C L V++L K++NH LL+ N RDP ++ Q FA A + A + +GG+++ F ++ +G CGKM LE LLA + + R K L+FS ST MLD+++ F+ +K Y RLDG+T +ER +N FNS + VFLIST+
Sbjct: 627 KCDQVVFCDLTPYQLAAYERILAMPEFELLRRGEEPCDCGRDSKQKRKQCCYQTPQSLG------DSRALLWERFHPDGGACRSCPNCMGLVCVAQLLKLSNHMELLKVNPRDPPELQEYQADFAATALGEDA-DAVGGVQQVSNFQEMRAIGTKTCGKMLVLEKLLAVWKKRRQKTLLFSRSTRMLDIIQLFLISKAIAYSRLDGSTKVEERLQLVNNFNSKESNTSVFLISTK 854
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A7S2W4G0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4G0_9STRA) HSP 1 Score: 188 bits (478), Expect = 8.390e-52 Identity = 110/270 (40.74%), Postives = 148/270 (54.81%), Query Frame = 3
Query: 6 ELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDG------------------------VDPRAVLFRRL--HPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGL-ERSQKFLDVSKVGVCGKMKSLETLLAKFHETR--DKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
EL D+L K VVFC LS +Q +LY+R+L LP+F + + EPCDCGR G R CC+ P G G +DPRAV++R++ H C++CP C P ++KLQK+ANHP LLQ N RDP+ KR + FAEVAFT E +GG R++ L S+ VCGK++ LE +L F R +K +VFSWS LD+++ +G+ Y R DG+T RQ I+EFN F+FL STR
Sbjct: 243 ELKDMLPIKEQLVVFCHLSPLQVQLYRRLLQLPDFAAVRLSGEPCDCGRQGA-IRGECCYTAPFHGSGEQQGQAVHSVANGSHRSLTSVFADSAFEIDPRAVIWRQMPSHSEGSLCERCPNCLIFPCIAKLQKVANHPALLQVNSRDPKAKRDAVKAFAEVAFTPELLEPLGGTYTRAENVLMTSQTEVCGKLRVLEDILTAFWAARPVEKCVVFSWSVQTLDIIQDLCITRGWPYLRFDGSTPQGRRQGLIDEFNDLTKSNFIFLCSTR 511
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI) HSP 1 Score: 190 bits (483), Expect = 9.400e-52 Identity = 120/282 (42.55%), Postives = 160/282 (56.74%), Query Frame = 3
Query: 9 LGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDK---CPFCCQLPAVSKLQKIANHPCLLQENIRDP------EHKRQQQRQFAEVAFTDRAREIM--------GG-------------------------LERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRA-GVFVFLIST 725
LGD+LKGK TVVFC+L+ VQ+ +Y+ VLSLPEF+LLA A +PC CGR + + CC P D VDPRAV++RR HP L C K CP+CC A+SKLQK+ANHP LLQ ++ P HK FA VAF++ AR IM GG L R + FL + + CGKM++L+ LL +F + + KVL+FS+ST MLD+L++ ++GY + +LDG T+ +RQ I+ F A VFLIST
Sbjct: 544 LGDLLKGKIGTVVFCNLTHVQKLVYRTVLSLPEFKLLANASDPCPCGRPDARSGS-CCGMWPQDDTS-EDLVDPRAVIWRRFHPDLEVCKKGPGCPYCCSFSAISKLQKLANHPSLLQ--VKPPYKYGENAHKMLDDIAFANVAFSEEARVIMADLPGQHGGGAVSGSSIGXXXXXXXXXXXXEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERF-KNKHKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQNNVFLIST 820
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: UPI00053C4E63 (switch 2 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4E63) HSP 1 Score: 183 bits (464), Expect = 1.830e-49 Identity = 99/243 (40.74%), Postives = 150/243 (61.73%), Query Frame = 3
Query: 3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
E +G ++ GK D VVFC++S +Q+ +YQR+L LPE Q L PC CG + ++ CC + V ++++ LH ++ CD CPFC LP + KLQ+I+NH L++ N +D K+Q+ +FA F ++MGG+ S+ F+D+S V CGKM++LE L+A + DK+L+FS+S MLD+LE F+ KGY + RLDG+T + RQ+ +++FNS + VFLISTR
Sbjct: 372 ETIGHLMMGKEDNVVFCEMSTLQKRVYQRMLQLPEIQCLVNKDAPCTCGSPLK--QSECCRR-----------VVRDGIIWKYLHRDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKSNPKDERDKQQRDSEFASAVFGPDI-DLMGGIAPSESFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLVRKGYCFLRLDGSTPTNLRQSLVDDFNSSPSKS-VFLISTR 599
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A833T200_PHYIN (Helicase conserved C-terminal domain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T200_PHYIN) HSP 1 Score: 182 bits (462), Expect = 5.880e-49 Identity = 102/235 (43.40%), Postives = 138/235 (58.72%), Query Frame = 3
Query: 30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
K+D VVFCDL+ +Q YQRVL++PEFQLL R +E CDCGR R +CC+KTP G D +L+ R H C CP C LP V+ L K++NH LL+ N D + + QR+FA AF E+ GG+++ F ++ + CGKM LE LLA + + R + L+FS ST MLD+++ F+ K Y RLDG T +ER +N+FNS + VFLISTR
Sbjct: 624 KNDQVVFCDLTPLQMAAYQRVLAMPEFQLLQRGEERCDCGRDSGEKRKKCCYKTPSDIG------DAPGLLYERFHED-GPCKNCPNCMGLPCVAMLLKLSNHLELLKVNPHDGQELQHYQREFASTAFGSDLDEV-GGVDQVSSFQEMCAISTKTCGKMIVLEKLLAVWKKRRQRTLIFSRSTRMLDIIQLFLITKATKYSRLDGNTKVEERLQMVNDFNSSESNTTVFLISTR 850
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: M4BF79_HYAAE (Helicase C-terminal domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BF79_HYAAE) HSP 1 Score: 181 bits (460), Expect = 9.260e-49 Identity = 101/235 (42.98%), Postives = 140/235 (59.57%), Query Frame = 3
Query: 30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
K+D VVFCDL+ +Q Y+R+L++PEFQLL R +E CDCGR R +CC+KTP D D +L+ R H C CP C LP V+ L K++NH LL+ N RD +Q Q +FA AF + +GG+ + F ++ + CGKM LE LL+ + + R++ L+FS ST MLD+++ F+ AK Y RLDGTT +ER IN+FN+ + VFLISTR
Sbjct: 442 KNDQVVFCDLTPLQMAAYRRILAMPEFQLLRRGEEKCDCGRDSSEKRKKCCYKTPK------DVSDAPGLLYERFHDD-KPCGNCPNCMCLPCVAMLLKLSNHLELLKVNPRDGSEIQQYQAEFARTAFGSDL-DAVGGVNQVSSFQEMCSISTKACGKMIVLEKLLSVWKKRRERALIFSRSTRMLDIIQLFIIAKATRYSRLDGTTKVEERLQMINDFNNPDSNTTVFLISTR 668
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: V4KFN1_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFN1_EUTSA) HSP 1 Score: 180 bits (457), Expect = 1.680e-48 Identity = 99/244 (40.57%), Postives = 150/244 (61.48%), Query Frame = 3
Query: 3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAF-TDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
E +G ++ GK D VVFC +SEVQ+ +YQR+L LPE Q L PC CG + +++CC + + P ++ LH + CD CPFC LP + KLQ+I+NH L++ N +D K+++ +F F TD +++GG+ S+ F+D+S V CGKM++LE L+A + DK+L+FS+S MLD+LE F+ KGY + RLDG+T + RQ+ +++FN+ + VFLISTR
Sbjct: 379 ETIGHLMMGKEDNVVFCQMSEVQKRVYQRMLQLPEIQCLVNKDNPCACGSPLK--QSQCCRR-----------IVPEGTIWSYLHRDNHDGCDSCPFCLVLPCLLKLQQISNHLELIKPNPKDEPEKQKKDAEFVSAVFGTDI--DLVGGVSASESFMDLSDVKHCGKMRALEKLMASWLSKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ-VFLISTR 606
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A087HKR7_ARAAL (Snf2 super family n=2 Tax=Arabis TaxID=50451 RepID=A0A087HKR7_ARAAL) HSP 1 Score: 179 bits (454), Expect = 4.280e-48 Identity = 99/244 (40.57%), Postives = 151/244 (61.89%), Query Frame = 3
Query: 3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAF-TDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
E +G ++ GK D VVFC +SE+Q+ +YQR+L LPE Q L +PC CG + ++ CC + + P ++ LH + CD CPFC LP + KLQ+I+NH L++ N +D K+++ +FA F TD +++GG+ S+ F+D+S V CGKM++LE L+A + DK+L+FS+S MLD+LE F+ KGY + RLDG+T + RQ+ +++FN+ + VFLISTR
Sbjct: 368 ETIGHLMMGKEDNVVFCQMSELQKRVYQRMLQLPEIQCLVNKDKPCACGSPLK--QSECCRR-----------IVPDGPIWSYLHRENPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDETEKQKKDAEFASAVFGTDI--DLVGGVSASESFMDLSDVTHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ-VFLISTR 595
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A7J7CEK0_TRIWF (Switch 2 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CEK0_TRIWF) HSP 1 Score: 178 bits (451), Expect = 4.570e-48 Identity = 98/243 (40.33%), Postives = 149/243 (61.32%), Query Frame = 3
Query: 3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
E +G ++ GK D VVFC +SEVQ+ +Y+R+L LP+ Q L PC CG T+ CC +T P +++ LH E C+ CPFC LP + KLQ+I+NH L++ N RD K+++ +FA F + +++GG +++ F+ +S V CGKM++LE L++ + DK+L+FS+S MLD+LE FV KGY + RLDG+T + RQ+ +++FNS + + VFLISTR
Sbjct: 215 ETIGHLMMGKEDNVVFCAMSEVQKRVYRRMLQLPDIQCLINKDLPCGCGSP--LTQVECCKRTV-----------PNGIIWPYLHRDNPEGCESCPFCLVLPCLVKLQQISNHLELIKPNPRDELEKQRKDAEFASAVFGPDS-DLVGGNAQNESFMGLSNVKHCGKMRALEKLMSSWASMGDKILLFSYSVRMLDILEKFVIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKL-VFLISTR 442 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14590.3306.1 >prot_E-fasciculatus_F_contig14590.3306.1 ID=prot_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp TRSLATCSRGSRTPWCSATLARSSASCTSGCCPFRNSSCSRGPRSRATAVback to top mRNA from alignment at E-fasciculatus_F_contig14590:65..3256- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14590.3306.1 ID=mRNA_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14590:65..3256- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14590:65..3256- >mRNA_E-fasciculatus_F_contig14590.3306.1 ID=mRNA_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14590:65..3256- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |