mRNA_E-fasciculatus_F_contig14590.3306.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14590.3306.1
Unique NamemRNA_E-fasciculatus_F_contig14590.3306.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 1.450e-159
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 3
Query:    3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPC+CGRSGRPTRARCCHKTPDS GGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWST MLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR
Sbjct:  711 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCNCGRSGRPTRARCCHKTPDSRGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 952          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A662XL21_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL21_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.910e-52
Identity = 103/235 (43.83%), Postives = 145/235 (61.70%), Query Frame = 3
Query:   30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            K D VVFCDL+  Q   Y+R+L++PEF+LL R +EPCDCGR  +  R +CC++TP S G      D RA+L+ R HP    C  CP C  L  V++L K++NH  LL+ N RDP   ++ Q  FA  A  + A + +GG+++   F ++  +G   CGKM  LE LLA + + R K L+FS ST MLD+++ F+ +K   Y RLDG+T  +ER   +N FNS  +   VFLIST+
Sbjct:  627 KCDQVVFCDLTPYQLAAYERILAMPEFELLRRGEEPCDCGRDSKQKRKQCCYQTPQSLG------DSRALLWERFHPDGGACRSCPNCMGLVCVAQLLKLSNHMELLKVNPRDPPELQEYQADFAATALGEDA-DAVGGVQQVSNFQEMRAIGTKTCGKMLVLEKLLAVWKKRRQKTLLFSRSTRMLDIIQLFLISKAIAYSRLDGSTKVEERLQLVNNFNSKESNTSVFLISTK 854          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A7S2W4G0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4G0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.390e-52
Identity = 110/270 (40.74%), Postives = 148/270 (54.81%), Query Frame = 3
Query:    6 ELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDG------------------------VDPRAVLFRRL--HPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGL-ERSQKFLDVSKVGVCGKMKSLETLLAKFHETR--DKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            EL D+L  K   VVFC LS +Q +LY+R+L LP+F  +  + EPCDCGR G   R  CC+  P    G   G                        +DPRAV++R++  H     C++CP C   P ++KLQK+ANHP LLQ N RDP+ KR   + FAEVAFT    E +GG   R++  L  S+  VCGK++ LE +L  F   R  +K +VFSWS   LD+++     +G+ Y R DG+T    RQ  I+EFN      F+FL STR
Sbjct:  243 ELKDMLPIKEQLVVFCHLSPLQVQLYRRLLQLPDFAAVRLSGEPCDCGRQGA-IRGECCYTAPFHGSGEQQGQAVHSVANGSHRSLTSVFADSAFEIDPRAVIWRQMPSHSEGSLCERCPNCLIFPCIAKLQKVANHPALLQVNSRDPKAKRDAVKAFAEVAFTPELLEPLGGTYTRAENVLMTSQTEVCGKLRVLEDILTAFWAARPVEKCVVFSWSVQTLDIIQDLCITRGWPYLRFDGSTPQGRRQGLIDEFNDLTKSNFIFLCSTR 511          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 9.400e-52
Identity = 120/282 (42.55%), Postives = 160/282 (56.74%), Query Frame = 3
Query:    9 LGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDK---CPFCCQLPAVSKLQKIANHPCLLQENIRDP------EHKRQQQRQFAEVAFTDRAREIM--------GG-------------------------LERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRA-GVFVFLIST 725
            LGD+LKGK  TVVFC+L+ VQ+ +Y+ VLSLPEF+LLA A +PC CGR    + + CC   P       D VDPRAV++RR HP L  C K   CP+CC   A+SKLQK+ANHP LLQ  ++ P       HK      FA VAF++ AR IM        GG                         L R + FL + +   CGKM++L+ LL +F + + KVL+FS+ST MLD+L++   ++GY + +LDG T+  +RQ  I+ F    A    VFLIST
Sbjct:  544 LGDLLKGKIGTVVFCNLTHVQKLVYRTVLSLPEFKLLANASDPCPCGRPDARSGS-CCGMWPQDDTS-EDLVDPRAVIWRRFHPDLEVCKKGPGCPYCCSFSAISKLQKLANHPSLLQ--VKPPYKYGENAHKMLDDIAFANVAFSEEARVIMADLPGQHGGGAVSGSSIGXXXXXXXXXXXXEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERF-KNKHKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQNNVFLIST 820          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: UPI00053C4E63 (switch 2 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4E63)

HSP 1 Score: 183 bits (464), Expect = 1.830e-49
Identity = 99/243 (40.74%), Postives = 150/243 (61.73%), Query Frame = 3
Query:    3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            E +G ++ GK D VVFC++S +Q+ +YQR+L LPE Q L     PC CG   +  ++ CC +           V    ++++ LH   ++ CD CPFC  LP + KLQ+I+NH  L++ N +D   K+Q+  +FA   F     ++MGG+  S+ F+D+S V  CGKM++LE L+A +    DK+L+FS+S  MLD+LE F+  KGY + RLDG+T +  RQ+ +++FNS  +   VFLISTR
Sbjct:  372 ETIGHLMMGKEDNVVFCEMSTLQKRVYQRMLQLPEIQCLVNKDAPCTCGSPLK--QSECCRR-----------VVRDGIIWKYLHRDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKSNPKDERDKQQRDSEFASAVFGPDI-DLMGGIAPSESFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLVRKGYCFLRLDGSTPTNLRQSLVDDFNSSPSKS-VFLISTR 599          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A833T200_PHYIN (Helicase conserved C-terminal domain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T200_PHYIN)

HSP 1 Score: 182 bits (462), Expect = 5.880e-49
Identity = 102/235 (43.40%), Postives = 138/235 (58.72%), Query Frame = 3
Query:   30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            K+D VVFCDL+ +Q   YQRVL++PEFQLL R +E CDCGR     R +CC+KTP   G      D   +L+ R H     C  CP C  LP V+ L K++NH  LL+ N  D +  +  QR+FA  AF     E+ GG+++   F ++  +    CGKM  LE LLA + + R + L+FS ST MLD+++ F+  K   Y RLDG T  +ER   +N+FNS  +   VFLISTR
Sbjct:  624 KNDQVVFCDLTPLQMAAYQRVLAMPEFQLLQRGEERCDCGRDSGEKRKKCCYKTPSDIG------DAPGLLYERFHED-GPCKNCPNCMGLPCVAMLLKLSNHLELLKVNPHDGQELQHYQREFASTAFGSDLDEV-GGVDQVSSFQEMCAISTKTCGKMIVLEKLLAVWKKRRQRTLIFSRSTRMLDIIQLFLITKATKYSRLDGNTKVEERLQMVNDFNSSESNTTVFLISTR 850          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: M4BF79_HYAAE (Helicase C-terminal domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BF79_HYAAE)

HSP 1 Score: 181 bits (460), Expect = 9.260e-49
Identity = 101/235 (42.98%), Postives = 140/235 (59.57%), Query Frame = 3
Query:   30 KSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLMECDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGV--CGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            K+D VVFCDL+ +Q   Y+R+L++PEFQLL R +E CDCGR     R +CC+KTP       D  D   +L+ R H     C  CP C  LP V+ L K++NH  LL+ N RD    +Q Q +FA  AF     + +GG+ +   F ++  +    CGKM  LE LL+ + + R++ L+FS ST MLD+++ F+ AK   Y RLDGTT  +ER   IN+FN+  +   VFLISTR
Sbjct:  442 KNDQVVFCDLTPLQMAAYRRILAMPEFQLLRRGEEKCDCGRDSSEKRKKCCYKTPK------DVSDAPGLLYERFHDD-KPCGNCPNCMCLPCVAMLLKLSNHLELLKVNPRDGSEIQQYQAEFARTAFGSDL-DAVGGVNQVSSFQEMCSISTKACGKMIVLEKLLSVWKKRRERALIFSRSTRMLDIIQLFIIAKATRYSRLDGTTKVEERLQMINDFNNPDSNTTVFLISTR 668          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: V4KFN1_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFN1_EUTSA)

HSP 1 Score: 180 bits (457), Expect = 1.680e-48
Identity = 99/244 (40.57%), Postives = 150/244 (61.48%), Query Frame = 3
Query:    3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAF-TDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            E +G ++ GK D VVFC +SEVQ+ +YQR+L LPE Q L     PC CG   +  +++CC +           + P   ++  LH    + CD CPFC  LP + KLQ+I+NH  L++ N +D   K+++  +F    F TD   +++GG+  S+ F+D+S V  CGKM++LE L+A +    DK+L+FS+S  MLD+LE F+  KGY + RLDG+T +  RQ+ +++FN+  +   VFLISTR
Sbjct:  379 ETIGHLMMGKEDNVVFCQMSEVQKRVYQRMLQLPEIQCLVNKDNPCACGSPLK--QSQCCRR-----------IVPEGTIWSYLHRDNHDGCDSCPFCLVLPCLLKLQQISNHLELIKPNPKDEPEKQKKDAEFVSAVFGTDI--DLVGGVSASESFMDLSDVKHCGKMRALEKLMASWLSKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ-VFLISTR 606          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A087HKR7_ARAAL (Snf2 super family n=2 Tax=Arabis TaxID=50451 RepID=A0A087HKR7_ARAAL)

HSP 1 Score: 179 bits (454), Expect = 4.280e-48
Identity = 99/244 (40.57%), Postives = 151/244 (61.89%), Query Frame = 3
Query:    3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAF-TDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            E +G ++ GK D VVFC +SE+Q+ +YQR+L LPE Q L    +PC CG   +  ++ CC +           + P   ++  LH    + CD CPFC  LP + KLQ+I+NH  L++ N +D   K+++  +FA   F TD   +++GG+  S+ F+D+S V  CGKM++LE L+A +    DK+L+FS+S  MLD+LE F+  KGY + RLDG+T +  RQ+ +++FN+  +   VFLISTR
Sbjct:  368 ETIGHLMMGKEDNVVFCQMSELQKRVYQRMLQLPEIQCLVNKDKPCACGSPLK--QSECCRR-----------IVPDGPIWSYLHRENPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDETEKQKKDAEFASAVFGTDI--DLVGGVSASESFMDLSDVTHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ-VFLISTR 595          
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Match: A0A7J7CEK0_TRIWF (Switch 2 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CEK0_TRIWF)

HSP 1 Score: 178 bits (451), Expect = 4.570e-48
Identity = 98/243 (40.33%), Postives = 149/243 (61.32%), Query Frame = 3
Query:    3 EELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCDCGRSGRPTRARCCHKTPDSHGGGGDGVDPRAVLFRRLHPTLME-CDKCPFCCQLPAVSKLQKIANHPCLLQENIRDPEHKRQQQRQFAEVAFTDRAREIMGGLERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTTMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTR 728
            E +G ++ GK D VVFC +SEVQ+ +Y+R+L LP+ Q L     PC CG     T+  CC +T            P  +++  LH    E C+ CPFC  LP + KLQ+I+NH  L++ N RD   K+++  +FA   F   + +++GG  +++ F+ +S V  CGKM++LE L++ +    DK+L+FS+S  MLD+LE FV  KGY + RLDG+T +  RQ+ +++FNS  + + VFLISTR
Sbjct:  215 ETIGHLMMGKEDNVVFCAMSEVQKRVYRRMLQLPDIQCLINKDLPCGCGSP--LTQVECCKRTV-----------PNGIIWPYLHRDNPEGCESCPFCLVLPCLVKLQQISNHLELIKPNPRDELEKQRKDAEFASAVFGPDS-DLVGGNAQNESFMGLSNVKHCGKMRALEKLMSSWASMGDKILLFSYSVRMLDILEKFVIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKL-VFLISTR 442          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14590.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX84_ECTSI1.450e-15998.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662XL21_9STRA1.910e-5243.83Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S2W4G0_9STRA8.390e-5240.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FIQ3_ECTSI9.400e-5242.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00053C4E631.830e-4940.74switch 2 isoform X1 n=2 Tax=Tarenaya hassleriana T... [more]
A0A833T200_PHYIN5.880e-4943.40Helicase conserved C-terminal domain n=2 Tax=Phyto... [more]
M4BF79_HYAAE9.260e-4942.98Helicase C-terminal domain-containing protein n=1 ... [more]
V4KFN1_EUTSA1.680e-4840.57Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
A0A087HKR7_ARAAL4.280e-4840.57Snf2 super family n=2 Tax=Arabis TaxID=50451 RepID... [more]
A0A7J7CEK0_TRIWF4.570e-4840.33Switch 2 n=2 Tax=Tripterygium wilfordii TaxID=4586... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14590contigE-fasciculatus_F_contig14590:65..3256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size729
Cds size504
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927945.3369114-UTR-E-fasciculatus_F_contig14590:64..1961622927945.3369114-UTR-E-fasciculatus_F_contig14590:64..196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 65..196 -
1695995761.0835097-UTR-E-fasciculatus_F_contig14590:64..1961695995761.0835097-UTR-E-fasciculatus_F_contig14590:64..196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 65..196 -
1622927945.6559498-UTR-E-fasciculatus_F_contig14590:544..6251622927945.6559498-UTR-E-fasciculatus_F_contig14590:544..625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 545..625 -
1695995761.0933838-UTR-E-fasciculatus_F_contig14590:544..6251695995761.0933838-UTR-E-fasciculatus_F_contig14590:544..625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 545..625 -
1622927945.693679-UTR-E-fasciculatus_F_contig14590:1271..12821622927945.693679-UTR-E-fasciculatus_F_contig14590:1271..1282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 1272..1282 -
1695995761.1031783-UTR-E-fasciculatus_F_contig14590:1271..12821695995761.1031783-UTR-E-fasciculatus_F_contig14590:1271..1282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14590 1272..1282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927945.711783-CDS-E-fasciculatus_F_contig14590:1282..13791622927945.711783-CDS-E-fasciculatus_F_contig14590:1282..1379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 1283..1379 -
1695995761.1131008-CDS-E-fasciculatus_F_contig14590:1282..13791695995761.1131008-CDS-E-fasciculatus_F_contig14590:1282..1379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 1283..1379 -
1622927945.72209-CDS-E-fasciculatus_F_contig14590:2048..21021622927945.72209-CDS-E-fasciculatus_F_contig14590:2048..2102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 2049..2102 -
1695995761.1220038-CDS-E-fasciculatus_F_contig14590:2048..21021695995761.1220038-CDS-E-fasciculatus_F_contig14590:2048..2102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 2049..2102 -
1622927945.7326856-CDS-E-fasciculatus_F_contig14590:2447..26761622927945.7326856-CDS-E-fasciculatus_F_contig14590:2447..2676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 2448..2676 -
1695995761.1335769-CDS-E-fasciculatus_F_contig14590:2447..26761695995761.1335769-CDS-E-fasciculatus_F_contig14590:2447..2676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 2448..2676 -
1622927945.7432487-CDS-E-fasciculatus_F_contig14590:3132..32561622927945.7432487-CDS-E-fasciculatus_F_contig14590:3132..3256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 3133..3256 -
1695995761.1424804-CDS-E-fasciculatus_F_contig14590:3132..32561695995761.1424804-CDS-E-fasciculatus_F_contig14590:3132..3256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14590 3133..3256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14590.3306.1prot_E-fasciculatus_F_contig14590.3306.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14590 1283..3256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14590.3306.1

>prot_E-fasciculatus_F_contig14590.3306.1 ID=prot_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp
TRSLATCSRGSRTPWCSATLARSSASCTSGCCPFRNSSCSRGPRSRATAV
EAGAPLAPGAATRRPTATAAAATGWTPVRCCSAGCTPRSWSAISARSAAS
CRPCPSCRRSRTTRACFRKTSGTPSISDSNNDNSPRWRSRTGRGRSWEGW
SGRRSSWTFRKLAFAAR*
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mRNA from alignment at E-fasciculatus_F_contig14590:65..3256-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14590.3306.1 ID=mRNA_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14590:65..3256- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGAGGAGCTTGGCGACGTGCTCAAGGGGAAGTCGGACACCGTGGTGTTC TGCGACCTTAGCGAGGTCCAGCGCGAGCTGTACCAGCGGGTGCTGTCCCT TCCGGAATTCCAGCTGCTCGCGAGGTAAAAGAATGAGCAGCAGTTACGGT TACGTTTCGTTTTTTGCTTTTCTGCCTCGTTTCAACCTCCCGGGGTCCCC TCTTTCGCCCCATTTTTTCACGGCAGGGATGTGAGCTTGTTTTTCCCCAA GTATTGTTACCGATTTTATTTTATTTTTTTGTGAGAAAGAAATCGGGTTG TTTGTTGTAGCACGCCCGTACACGACAGTAACCGCTGAACCTAGGCAATT TTTCTTGTCTTGCTCGTTTTTATTGAACGTCTCTCGTTATCAAGGTTCCC TAGAACAGCAAATTCTCGCCCCCCCCCCTCCCCCCCTCCCATCGATGAGA AACGCGCCGCTTTCGTCAACTACTTCTATCTCGTTGAGGGAGGCGGAGGG GCACCGGCGAATACTCGACTTTTGTTTCCCACCAAACCCTTGCCCTTGAC GTGCTTTGCGGGCGGGTGTTTTGGCGACAGGGCCAAGGAGCCGTGCGACT GCGGTCGAAGCGGGCGCCCCACTCGCGCCCGGTGCTGCCACAAGACGCCC GACAGCCACGGCGGCGGCGGCGACGGGGTGGACCCCCGTGCGGTGCTGTT CCGCAGGCTGCACCCCACGCTCATGGAGTGCGATAAGTGCCCGTTCTGCT GCCAGCTGCCGGCCGTGTCCAAGCTGCAGAAGATCGCGAACCACCCGTGC CTGCTTCAGGTTGGTGTGGCAAGATTATGGAGAGAAAGAGAGAGAGAGAG AGAGAGAGAGAGAAGTTTTGACTGCTGCTGGTACTGTTGTTGCTGCTGCT GGGTGTGTTAGTTACATTCTCTCTTTCTGCGTCATCTGGCTGTGCCACTT GTGTTGTTGCTATTGCTTACACAAACTTTGCTCGTAATCCTACGGTATTG CGTGTTGGTTAACTTCTCTCTTTCTGCGACACCTGGCTATGCCACTTGTA TTGCTGCTAATGCTTACACAACCCGTTCTCACAATCCTTCGTGTGTTAGT TACATTCTCTCTTTCTGCGTGATCTGGCTGTACTGCTGTACTGCTGTTGC GCAGGAAAACATCCGGGACCCCGAGCATAAGCGACAGCAACAACGACAAT TCGCCGAGGTGGGTTTAGGAAATAGGCGAGAGGGAGAGCGGGGGGGGAGG GGCGAATAGGACAGTGCGAAGGGGTGTATCAATATGTGCAGCCCTTTCAT AGTCCCGACGTCGTCGTTGCGCTTAAGCGCGCTCTGTTCCGTGGCTGAGG GAAGAGTGATTCTTATCGTCGTTGTTGTCGTTGTTGTCAATAACCCGCAC GAGGTAGATTTTTTGACTGGAACTCGAACAGCTGCTGTCGAAGCAGAGAA ACCACCCTTCGGTGGGGGGCAGTCTGCATGTTTGCTGTCACCGGGCATTT TTGTGTTGAGAGATTCCACCGTTCCTTTCCCCCCGTCTGGACCCTCCCCT CTCGTCCTCTCTTATCTTTTGTCGCCTGTCGTGTTAAAACTATCCCGATG TACCGGAGCGCTGGTTGCTGTACACCACCTTTGCTGCGTTGTGTTTCCTC TCCTTTTTTGCTCTGGGCGGAAGGAACAACGCATCGCTTGTGGAGCTCGC TACCCCTCCTACTTCTTGCCTTTGTTCCTGCGTCTCATCGTTTGTTTTTT CGACCTTAAATTTTTTTTTTGTTTTCGTTCTGCTCTCTCTTTCGTGGTGT CATGTTTGTCGTGTCCGGTCCGGTCTCCGCGCGTTTTTCCCTTGTTTTTT TTTTCCTTCTCTCTGGTTTGGTGTAAGGTGGCGTTCACGGACAGGGCGAG GGAGATCATGGGAGGGCTGGAGCGGTCGCAGAAGTTCCTGGACGTTTCGA AAGTTGGCGTTTGCGGCAAGATGAAGAGCCTCGAGGTAATGTGATGTGCT TGAACTTTGCTTCACTCGTCTGTACGTCGTTGTCGAGGTGATGTGCTTGG ACTTTGCTTCGCTCGTCTGTACGTCGTTGGCGTTGGCGTTGGCGTTGAGG TTGCTGCTGCGGCCGCAGTAGCCTTCGCGAGGATACTTTTAACTATCTTG GTTTTTGTAGGGGGTACGGGGTAGGGTTAGGGATAGGGATACGAACCCCC CCCCTCTCTATTTCATGGATTAAGAATCATTTCTCGCGATGGCGGTCCTG TGGCCGTTGATCATCAAGTACAGGTTTGACCATGTTTCTCGTTGGTTGGT TGAGGTTCGCTCGAGTCGAAACACGTCGGGTGTGTGTGGGCTGTTCGAGC TTGGATAACAGCGTCACAGCTGGCAGTCAGTTTCTCGATCGAACTTTCTT GGTTTCATCGTACGTCGCCCCTTCTTGATGGCTCCTTGCGCTCTCATGAG CCCACTCCGACGCGGGCAGGCACCCTCGTAGGCTGTGTATGCATCCAGAT TTGTTATTTTTGGTTCGTTGAGATTTGCCTCTAGAACTGTTTTAATAATG ATTTCAAAATTTTTTATACACACAACACAAAGCGTCTCTGCCCCCCCCCC CCCCCCACCGCGGTTGGTTTTGGATGACCAGACTCTGCTGGCCAAGTTCC ACGAGACACGGGACAAGGTGCTCGTGTTCAGCTGGAGCACCACCATGCTT GACGTCCTCGAGGTGTGCACGGATGTGTTTTATGTAACGGAAAGGGCATT CGTTGCTACCTCCGTAGAGTTGGCCCCCTCCCCCGCCCCCCCCCTGCCGC CGTGCTCACACTCGCTCGGCGGCAACAACCTCTTCCTCGGACATGAGCAC GATAACCTGCTACAATATCTTAACCCTTTCTCGACAAACACAAAGATGGC GTTACGGTCTAAAACTAACAATTTTCGCCAGCACAGTAGTAATGAGCTGG TTCGGGGCGCTGCAGTGGTGAAGGGCTTGTGGTGAGCCGTTCCTGTCGTC GTCATTGCCTCTGTTTGACGCGCCAGTCACGCCGCTGTCGCACGCCTCCG CCGCAAGCAGAGTTTCGTGGGCGCGAAGGGCTACGTGTACCGGCGGCTGG ACGGGACTACCTCGAGCAAGGAGCGGCAGGCGAGGATAAACGAGTTCAAC TCCGACCGAGCGGGCGTGTTCGTGTTCCTCATCAGCACGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14590:65..3256-

>mRNA_E-fasciculatus_F_contig14590.3306.1 ID=mRNA_E-fasciculatus_F_contig14590.3306.1|Name=mRNA_E-fasciculatus_F_contig14590.3306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14590:65..3256- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGAGGAGCTTGGCGACGTGCTCAAGGGGAAGTCGGACACCGTGGTGTTC
TGCGACCTTAGCGAGGTCCAGCGCGAGCTGTACCAGCGGGTGCTGTCCCT
TCCGGAATTCCAGCTGCTCGCGAGACGAGGAGCTTGGCGACGTGCTCAAG
GGGAAGTCGGACACCGTGGTGTTCTGCGACCTTAGCGAGGTCCAGCGCGA
GCTGTACCAGCGGGTGCTGTCCCTTCCGGAATTCCAGCTGCTCGCGAGGG
CCAAGGAGCCGTGCGACTGCGGTCGAAGCGGGCGCCCCACTCGCGCCCGG
TGCTGCCACAAGACGCCCGACAGCCACGGCGGCGGCGGCGACGGGGTGGA
CCCCCGTGCGGTGCTGTTCCGCAGGCTGCACCCCACGCTCATGGAGTGCG
ATAAGTGCCCGTTCTGCTGCCAGCTGCCGGCCGTGTCCAAGCTGCAGAAG
ATCGCGAACCACCCGTGCCTGCTTCAGGGCCAAGGAGCCGTGCGACTGCG
GTCGAAGCGGGCGCCCCACTCGCGCCCGGTGCTGCCACAAGACGCCCGAC
AGCCACGGCGGCGGCGGCGACGGGGTGGACCCCCGTGCGGTGCTGTTCCG
CAGGCTGCACCCCACGCTCATGGAGTGCGATAAGTGCCCGTTCTGCTGCC
AGCTGCCGGCCGTGTCCAAGCTGCAGAAGATCGCGAACCACCCGTGCCTG
CTTCAGGAAAACATCCGGGACCCCGAGCATAAGCGACAGCAACAACGACA
ATTCGCCGAGGAAAACATCCGGGACCCCGAGCATAAGCGACAGCAACAAC
GACAATTCGCCGAGGTGGCGTTCACGGACAGGGCGAGGGAGATCATGGGA
GGGCTGGAGCGGTCGCAGAAGTTCCTGGACGTTTCGAAAGTTGGCGTTTG
CGGCAAGATGAGTGGCGTTCACGGACAGGGCGAGGGAGATCATGGGAGGG
CTGGAGCGGTCGCAGAAGTTCCTGGACGTTTCGAAAGTTGGCGTTTGCGG
CAAGATGA
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