mRNA_E-fasciculatus_F_contig14578.3298.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14578.3298.1
Unique NamemRNA_E-fasciculatus_F_contig14578.3298.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: D8LC29_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC29_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.540e-97
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 RWVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDAVRERDGDEAAIEEFFRRRRGE 444
            RWVNTGAVVGHPKLKGLRHVRIREPPAVS+FWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDA+RERDGDEAAIEEFFRRRRGE
Sbjct:  147 RWVNTGAVVGHPKLKGLRHVRIREPPAVSQFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDALRERDGDEAAIEEFFRRRRGE 294
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: A0A067D5L9_SAPPC (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D5L9_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 2.290e-12
Identity = 42/140 (30.00%), Postives = 76/140 (54.29%), Query Frame = 1 
Query:    4 WVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDFEEATGL----VTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDAVRERDGDEAA 411
            W    A++    L  LR V++ +PP  S+FWR+H+ G+G + T EA YL+L+++  A       +T    + +IL+ F L+   I   ++SDP++     P SE  K+R+R+   Q ++  K K +  +A + +  ++ A
Sbjct:  122 WQKGPAILNDKSLSHLRTVKLAKPPLHSKFWRYHSSGDGCVSTIEAVYLMLEEYTAAMHARNLALTSTDDVSEILYYFNLVHDTILETHKSDPNRQLDRAPMSEAEKERQRLLRSQKEQGQKRKRENREAHKRKVAEDVA 261
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: A0A1V9YI10_9STRA (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YI10_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.400e-12
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:    4 WVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLED----ILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDAVRERDGDE 405
            W     ++ HP +  LR V++ +PP  S+FWR+H+ GEG I T EA YL+L+++  A         + D    +L+ F ++   I   +++DP++  +  P SE AK+ +R+R  Q +   K K +  +A +++  D+
Sbjct:  129 WQKGPTILNHPSVAHLRAVKLAKPPLHSKFWRYHSSGEGCISTIEAVYLMLEEYLTALQKRNLTPSMTDPVGGLLYFFNIVHDVILETHKTDPNRQLERAPMSEAAKELQRLRHSQKEAGRKRKLENREAHKKKLADD 266
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: A0A1W0A5Q3_9STRA (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Q3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.170e-12
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    4 WVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDFEEATGL----VTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRV 327
            W    A++    +  LR V++ +PP  S+FWR+H+ GEG I T EA YL+L+++  A       ++    + D+L+ F ++   I   ++S+P++  +  P SEE K R+R+
Sbjct:  119 WQKGPAILNDSSISHLRSVKLAKPPLHSKFWRYHSSGEGCISTIEAVYLMLEEYSAACHARDIPLSSTDNVADLLYFFHMIHDVILETHKSNPNRQLERAPMSEEEKNRQRI 230
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: Q54C26_DICDI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54C26_DICDI)

HSP 1 Score: 52.4 bits (124), Expect = 3.950e-5
Identity = 24/87 (27.59%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:    1 RWVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYE 261
            +W N   ++ HPKL+G++ V+I     +  FWR    G+ ++ T EA Y   K+F  +       G  +++LF +    + I+  Y+
Sbjct:  207 QWHNARKILKHPKLQGIKCVKIDMQKTM--FWRHQRHGDSYLATIEAIYYFFKEFHLSQNNNQYNGEYDNLLFYYTFFYNLIQTTYK 291
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BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Match: A0A0L1KWS8_9EUGL (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KWS8_9EUGL)

HSP 1 Score: 52.0 bits (123), Expect = 4.790e-5
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:    4 WVNTGAVVGHPKLKGLRHVRIREPPAVSRFWRWHTEGEGHICTAEATYLVLKDF-----EEATGLVTRGGRLEDILFLFALMGSRIKAAYESD 267
            W  + AV     ++ L HV   +  A + FWR+ +EGEGH+ T EA Y   ++F     E+A       GR +D+LFLF      I++ Y  +
Sbjct:  159 WRQSQAVARSDGIRSLPHVVTLQDYA-TLFWRFQSEGEGHLSTIEAIYYFFREFHQVRNEQAGESNAYDGRYDDMLFLFVHQYLTIQSHYSQN 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14578.3298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LC29_ECTSI1.540e-9798.65tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A067D5L9_SAPPC2.290e-1230.00tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A1V9YI10_9STRA2.400e-1230.43tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A1W0A5Q3_9STRA4.170e-1232.14tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
Q54C26_DICDI3.950e-527.59tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A0L1KWS8_9EUGL4.790e-533.33tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14578contigE-fasciculatus_F_contig14578:131..2583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDTW
Ec32 orthologEc-20_004220.1
Hectar predicted targeting categoryother localisation
Exons4
Model size444
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14578.3298.1prot_E-fasciculatus_F_contig14578.3298.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14578 133..1891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927944.059044-UTR-E-fasciculatus_F_contig14578:130..1321622927944.059044-UTR-E-fasciculatus_F_contig14578:130..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 131..132 +
1695995760.414643-UTR-E-fasciculatus_F_contig14578:130..1321695995760.414643-UTR-E-fasciculatus_F_contig14578:130..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 131..132 +
1622927944.1054554-UTR-E-fasciculatus_F_contig14578:1891..19311622927944.1054554-UTR-E-fasciculatus_F_contig14578:1891..1931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 1892..1931 +
1695995760.4518895-UTR-E-fasciculatus_F_contig14578:1891..19311695995760.4518895-UTR-E-fasciculatus_F_contig14578:1891..1931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 1892..1931 +
1622927944.1206794-UTR-E-fasciculatus_F_contig14578:2454..25831622927944.1206794-UTR-E-fasciculatus_F_contig14578:2454..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 2455..2583 +
1695995760.4604244-UTR-E-fasciculatus_F_contig14578:2454..25831695995760.4604244-UTR-E-fasciculatus_F_contig14578:2454..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14578 2455..2583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927944.0718532-CDS-E-fasciculatus_F_contig14578:132..2691622927944.0718532-CDS-E-fasciculatus_F_contig14578:132..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 133..269 +
1695995760.4236414-CDS-E-fasciculatus_F_contig14578:132..2691695995760.4236414-CDS-E-fasciculatus_F_contig14578:132..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 133..269 +
1622927944.0828035-CDS-E-fasciculatus_F_contig14578:1230..13401622927944.0828035-CDS-E-fasciculatus_F_contig14578:1230..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 1231..1340 +
1695995760.4318683-CDS-E-fasciculatus_F_contig14578:1230..13401695995760.4318683-CDS-E-fasciculatus_F_contig14578:1230..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 1231..1340 +
1622927944.0939698-CDS-E-fasciculatus_F_contig14578:1865..18911622927944.0939698-CDS-E-fasciculatus_F_contig14578:1865..1891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 1866..1891 +
1695995760.4431646-CDS-E-fasciculatus_F_contig14578:1865..18911695995760.4431646-CDS-E-fasciculatus_F_contig14578:1865..1891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14578 1866..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14578.3298.1

>prot_E-fasciculatus_F_contig14578.3298.1 ID=prot_E-fasciculatus_F_contig14578.3298.1|Name=mRNA_E-fasciculatus_F_contig14578.3298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
MGQHRCRGRPPQAQRTPPRSHPRTPRREPVLAVAHRRRGPHMHSRSDVPR
AERLRGGDGIGYSGWSARRHPLPLCPHGLEDQGCLRVRSI*
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mRNA from alignment at E-fasciculatus_F_contig14578:131..2583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14578.3298.1 ID=mRNA_E-fasciculatus_F_contig14578.3298.1|Name=mRNA_E-fasciculatus_F_contig14578.3298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2453bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14578:131..2583+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATGGGTCAACACCGGTGCCGTGGTCGGCCACCCCAAGCTCAAAGGACT
CCGCCACGTTCGCATCCGCGAACCCCCCGCCGTGAGCCGGTTTTGGCGGT
GGCACACCGAAGGAGAGGGCCACATATGCACAGCAGAAGGTACGGACACG
GCTAGATTTCGACCGCATCACGGAGCCCCCTGTTTGGTGGTTGGCGAAGC
CTAGTGAAGGTCGGGCTTTAGGGTACGAGGACGTACGTGAGATCGGGCCG
CTGTTAAGTCTCTTGTTGTCGCTGCCCACAGTGTTTGACGCGTCTTTTGT
ATGAAGTGTTGGTCGCGAATTATCTTGGAGTTTTGTGGAACTCGCTCCGG
TAAGACGTGCCAAGCACCCGTTTCGACCCCCCCCCCGACGACAATCATGA
TCGAATGAGGTGACAAATGTACCTGCATCGTTTTGGCACTAGCTTAGTTT
ACCACAACTCGTGTACAAACCCCTACATACTGGCATCTGTGCTGTTCTTG
CACTTGGCCTTAAACTACAGCCACGTCATGCACATACAAACCCTTACATA
CCAGCACCTGTACCGTTTTCCTTACATACCAGCACCTGTACCGTTTTTGG
ACTATCTTACAATGCCGCCACGTCAAGCAGAAAAACCCAATCACATCGCC
ACCAAGCTTACACCGAGAGAGAAAAAGCTTGATCAGCGCCGGTCATCTGT
AAATTTGTTTTACGCGTCATGCACCAGCGTGCACTCGCTGCGGTATAGCA
AACGAAAGAGTACCTTGCAAGCTTTGATCGGAAAGCCAAATGCCCTCAGC
TGATCTCAAGGGCGCGGTCTCCCCAGAATGTAAGGGGTAGGTCGTGCCAC
CAAGTGCCACCCATGAAGAGGGTAGGAGGGAGGGAAGATATGCATTATGT
TCTGGAGTAGAGAGGCCCCCCAGATGGGACAACAAGGGGGTACCCACATC
ATACTATTCTAGTCCCCAGCAGAGCCCGGTTTACGTACGCCTGGTTGCAC
CTGGGCCTGCCCACCCCCTCTGGCTGGCGTGTGCGTTGTTGATGCATCGC
GCTTGTTGACGGCTCGTCGTTTCTTTCCCTTTTTCTCTTCTCTCTCAAAG
CGACGTACCTCGTGCTGAAAGACTTCGAGGAGGCGACGGGATTGGTTACT
CGGGGTGGTCGGCTCGAAGACATCCTCTTCCTCTTTGCCCTCATGGGCTC
GAGGATCAAGGTGCGGCCGGCGTATTAGCCCGAACATCACTCGTCTGTCA
GCTTTGTGCGACCCGGCCGGAGGTCGGAGATAAATCTGTCGGAGATCAGT
CTTCGGAGATCGGTCGCGTGCAACACAGATACCATTCTCTTACCCGCCGA
AAGTTAGGCTTAGAGTAGCGTCTCACCTCCTAATTCCTAGGCTCGTCCTC
TTTTTTTCTCTTTATTGTGTCTCCAAGTAGCCTTTGTCTTGTTCTATGAA
CGATGATACCTACTGTTTGTTTTGAGTGGGTTGCAACGTGCCGGGAGTAT
TTACGACCCAGCATTTAGTCAATCGCTTCTGTATACTTCCATGCCTTTCT
CGTGTTGAACCCCCTTTGGGGCGCACAAATAAATCGGTGTTGCGAAAGGT
AACAAAATAAGAGGAAAAACAGAAAACACCTGCATATTGGGTAATGCGGA
CAGTTCCAGACCTGGGTTCAGGGGGAAAGCGGCGTCCCTACTCGAACCAA
CACTTGTTCTCCCCGCTCGGGGGTTTTCCATTCAGGCTGCCTACGAGTCC
GATCCATCTAAGTTGGGGAAGAGCTGCCCATCGTCGGAAGAGGCCAAGCA
GGTGAGCGGTGGTAGGCGAGGGTACACGTCCGGGTATAACCGTGTACAGT
TGCGTTCGTCGATCGCTATTTAGGTGCACGACAAGCTGCACGAAAGAAAC
CAGTGTGCGACAGCTGCCCTGCTGGTGTCGTAGGTGTTGTTTTTTGATGT
TTGGTGTGCAACAAGGCTTGGTGGAGCACGCAGGCAATGATGTTGGTGTT
GTTTGATATTGGTGTGCAACACGGCTTAGAAAAGCACCCGAGCAATCGCG
AAACCAACTGCATCGATCGTCCGTTTCGAAGACAAACCAACCAATGTGAG
CTTCTTTTGCCCCCCCCCCCCCGCACGAATCAACCTGCAAGGTATGTAGC
CGCCTCATGTTTCATACCTCGTAGGAAACACCAGCGCGCAGGGTGTATCC
CTGCCTAGATTGTCACCCTCCACTTCTTCGCCCCTGGCTGTCGTAAATGT
GGCATGCGAGGGTGTGTCCACGCGTGGTGATGCGTGCCCCGTCCCCCGAT
TCCCACCACTTTTTGATTCTTCAGCGCCGACGAGTTCGACTTGTGCAGCT
AGATCGCCTCGTCAAGGCCAAGTACAAGGGACTGGACGCCGTGAGGGAGA
GGGACGGGGATGAGGCCGCGATTGAAGAGTTCTTCCGGAGACGTCGCGGG
GAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14578:131..2583+

>mRNA_E-fasciculatus_F_contig14578.3298.1 ID=mRNA_E-fasciculatus_F_contig14578.3298.1|Name=mRNA_E-fasciculatus_F_contig14578.3298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14578:131..2583+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCAACACCGGTGCCGTGGTCGGCCACCCCAAGCTCAAAGGACTCC
GCCACGTTCGCATCCGCGAACCCCCCGCCGTGAGCCGGTTTTGGCGGTGG
CACACCGAAGGAGAGGGCCACATATGCACAGCAGAAGATGGGTCAACACC
GGTGCCGTGGTCGGCCACCCCAAGCTCAAAGGACTCCGCCACGTTCGCAT
CCGCGAACCCCCCGCCGTGAGCCGGTTTTGGCGGTGGCACACCGAAGGAG
AGGGCCACATATGCACAGCAGAAGCGACGTACCTCGTGCTGAAAGACTTC
GAGGAGGCGACGGGATTGGTTACTCGGGGTGGTCGGCTCGAAGACATCCT
CTTCCTCTTTGCCCTCATGGGCTCGAGGATCAAGCGACGTACCTCGTGCT
GAAAGACTTCGAGGAGGCGACGGGATTGGTTACTCGGGGTGGTCGGCTCG
AAGACATCCTCTTCCTCTTTGCCCTCATGGGCTCGAGGATCAAGGCTGCC
TACGAGTCCGATCCATCTAAGCTGCCTACGAGTCCGATCCATCTAA
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