mRNA_E-fasciculatus_F_contig1456.3289.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.060e-30 Identity = 104/281 (37.01%), Postives = 146/281 (51.96%), Query Frame = 2
Query: 662 STTTSCGRDGGFRISERITLTLVCTACASATVTDEGHPIVCFSKARDIVSTGTAETRATTGVNSAQKSSLQK*IADAHVFARRATR--RGT---SCEARAGCHGREKATDSSRKNGSRAQEKPR---------LHHALFEHIFGDSTCWLLSPRGG*RSSSTGFRRTA*WCA---CAPSIPSLSWTFLENRGITPFILQDLRKAWSTRCFSPRACLG*RGLPIARYLCPA*LAQLE-AP-SQIPANVNRPKKNAPRMQRMSLHGLG---FDRAEIDRMMEF 1438
S+ TSC + I E I LTLVC +CAS ++DEG PIVCFSKARD+ T R +++ +++ + A +++ R +G CEA KA ++K R + R LHHALF HIFGD W P+ + +R +A + C+P P + + ENRGIT F+ LR+A+ F G+ I+RYLCP+ LA+L+ P SQIPA+V R KKNAPRM RM+L G G E++RMM++
Sbjct: 3 SSCTSCNQTNSLGIFEGIRLTLVCKSCASTALSDEGDPIVCFSKARDLFPT-IPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEA--------KAAQVAQKRQVRLERLTRVHGISPAAPLHHALFSHIFGDYL-WAAHPKQ--KLKQVKYRFSAHDISVRLCSPD-PVAAMNYCENRGITAFVYDQLRRAFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCNISSTEVERMMKY 270
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K) HSP 1 Score: 129 bits (325), Expect = 4.400e-29 Identity = 128/404 (31.68%), Postives = 174/404 (43.07%), Query Frame = 2
Query: 671 TSCGRDGGFRISERITLTLVCTACASATVTDEGHPIVCFSKARDIVSTGTAETRATTGVNSAQKSSLQK*IADAHVFARRATRR-----GTSCEARAGCHGREKATDSSRKNGSRAQEKPR---------LHHALFEHIFGDSTCWLLSPRGG*RSSSTGFRRTA*WCACAPSIPSLSWTFLENRGITPFILQDLRKAWSTRCFSPRACLG*RGLPIARYLCPA*LAQLE-AP-SQIPANVNRPKKNAPRMQRMSLHGLGF-DRAEIDRMMEFSP--TTPRWSPGVLDDEGQIARIGGRFFRAV-----RRGMVGNQRR*RELPPQNLRIFLLTSISMRL*AFSTPHANFSIPEARVFGANTMTHVS-----------LVLPENGNTMDQSIRTALRTCASGRR 1777
+SC I E I LTLVCT+CAS +DEG PIVCFSKARD+ T R +++ +++ + A +++ R CEA KA + +K R + R LH ALF HIFGD W P+ + F P P + + ENRGIT F+ LR+ + F G+ I+R+ CP+ LA+L+ P SQIPA+V R KKNAPRM RM+L G G E++RMM+ T R D +A F+R RR ++ + R L + ++ I + +F S L ENGNTMDQSI+ ALR CAS RR
Sbjct: 3 SSCCTSENLGIFEGIRLTLVCTSCASTARSDEGDPIVCFSKARDLFPT-IPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQAAVDEECEA--------KALEVEKKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYL-WATHPKQKLKQVKYRFSAHDISVRLCPHDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRFFCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCSTTEVERMMKHPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRVLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYRQALLENGNTMDQSIKMALRGCASRRR 396
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A1V9YZU6_9STRA (Ribonuclease H n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZU6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.810e-18 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = -3
Query: 129 LVVFTDGSCIQSLGKACAAT---VWSDAQFDDQAFFLDPCSPRTSNRAEFLAAIIAGEHTKL--------FRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAKNSEGFDTGVVLT 578
LV F DGS I + ++C A V+ + A L + T+NRAE+LAA+ A + L ++DSMLL+ SMT+W +GW+RN W++ + +KN DL++ L+ R HVKAHTN D+ S WN +AD+ A+ + + +LT
Sbjct: 149 LVAFCDGSAIGNGARSCKAAFACVFPHHEDWSVAGKLPSDAAATNNRAEYLAALEAMKRANLQDPEKVQPLFIFSDSMLLIKSMTEWLAGWKRNHWRKANGEPVKNADLLKRLEDTQGTRRILWRHVKAHTNKKDWESVWNDKADQLAQATARGKSNSLLT 309
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A6G6XPC2_9VIRU (Ribonuclease H domain-containing protein n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XPC2_9VIRU) HSP 1 Score: 94.4 bits (233), Expect = 2.880e-18 Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = -3
Query: 153 LVVFTDGSCIQ---SLGKACAATVWSDAQFDDQAFFLDPCSPRTSNRAEFLAAI--------IAGEHTKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAKNSEG 578
L+VFTDG+C S KA A VW + + D L+ +T+NRAE+ A I I K YTDS LLVNS+TKW GW+RN WK+ D+ + N DL++ +D + R HV+AHT +D+ S +N+ AD A+++ G
Sbjct: 73 LIVFTDGACSNNGTSRAKAGYAVVWPNNRSLDTYHRLNG-HEQTNNRAEYSALIEAQSIADKIEPTMQKPLYIYTDSELLVNSITKWLPGWKRNGWKKADKKPVLNQDLLKKIDE--NPRPLIFKHVRAHTGRSDWESIYNSEADRLARHAIG 222
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: T0R7Q0_SAPDV (Ribonuclease H n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7Q0_SAPDV) HSP 1 Score: 95.1 bits (235), Expect = 9.260e-18 Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = -3
Query: 168 LVVFTDGSCI---QSLGKACAATVWSDAQFDDQAFFLDPCSPRTSNRAEFLAAIIAGEH--------TKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECA 578
LV F DGS I QS +A A V+ + + L P + T+NRAE+LAA+ A + T+ ++DSMLL+ SMT+W GW+RN W + D +KN DL+Q LDS R HVKAHT+ ++ S WN + D+ A
Sbjct: 165 LVAFCDGSAIGNGQSGCRAAFACVFPHHEEWAVSGKLPPGAIATNNRAEYLAALEAMKRANVQDPAQTRPLYIFSDSMLLIQSMTEWLGGWKRNKWVKADGEPVKNADLLQLLDSTQGARCILWRHVKAHTHKKNWESVWNDKVDKLA 312
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: D0NEW7_PHYIT (Ribonuclease H n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEW7_PHYIT) HSP 1 Score: 94.7 bits (234), Expect = 1.230e-17 Identity = 55/160 (34.38%), Postives = 89/160 (55.62%), Query Frame = -3
Query: 162 RDLVVFTDGSCIQSLGKACAATV---------WSDAQ--FDDQAFFLDPCSPRTSNRAEFLAAIIA--------GEHTKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAKN 584
+ LV F DGS +++ + C A W+ A+ +D+A T+NRAE++AA+ A E +++ ++DSMLL+ SMT+W W++N+W ++D T ++N DL++ L ++ R + THVKAHT D+ S WN AD A+N
Sbjct: 159 KTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRA---------TNNRAEYMAALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAARN 309
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A075AN21_ROZAC (Ribonuclease H n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AN21_ROZAC) HSP 1 Score: 91.3 bits (225), Expect = 4.590e-17 Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = -3
Query: 165 HMRDLVVFTDGSCIQSLGKACAATVWSDAQFDDQAFFLDPC---SPRTSNRAEFLAAIIA---------GEHTKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAK 590
H LV FTDGS I + C A W+ ++++ + S +T+NRAE+LAAI A G+ L+ Y+DSMLL+ SMT+W +GW R W+++D T + N DL++ L +R HVKAHT ++ S WN +AD A+
Sbjct: 82 HKETLVCFTDGSAISNGSLNCRAG-WAAIFPHNESWNVSGKLSESKKTNNRAEYLAAIEAMRRANKEDPGQLKPLY-IYSDSMLLIRSMTEWVNGWIRKGWRKSDGTPVLNKDLLEELVETRGKRRIIWRHVKAHTGKKNWESIWNDKADRFAQ 233
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A6G0XGN6_9STRA (Ribonuclease H n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGN6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.360e-16 Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = -3
Query: 150 LVVFTDGSCIQSLGKACAATVWSDAQFDDQAFFLDPCSPR---TSNRAEFLAAIIAGEHTKL--------FRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAKNSEGF 578
LV F DGS I + GKA + ++ ++A+ + P+ T+NRAE+LAA+ A + L ++DSMLL+ SMT+W W++N+W ++D +KN+DL++ L R HVKAHTN D+ S WN +AD+ A+++ F
Sbjct: 237 LVAFCDGSAIGN-GKARCSAAFACVFPHNEAWNVSGKLPQFQATNNRAEYLAALEALKRANLEDPNIERPLYIFSDSMLLIRSMTEWLPTWQKNNWIKSDGEAVKNVDLLKQLTEARGNRRVIWRHVKAHTNKRDWKSIWNDKADQLARSTAFF 389
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: G4Z6L5_PHYSP (Ribonuclease H n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6L5_PHYSP) HSP 1 Score: 90.9 bits (224), Expect = 2.950e-16 Identity = 53/157 (33.76%), Postives = 87/157 (55.41%), Query Frame = -3
Query: 165 LVVFTDGSCIQSLGKACAATV---------WSDAQ--FDDQAFFLDPCSPRTSNRAEFLAAIIA--------GEHTKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAK 578
LV F DGS +++ + C A W+ A+ +D+ T+NRAE++AA+ A E +++ ++DSMLL+ SMT+W W++N+WK++D ++N DL++ L ++ +R + THVKAHT D+ S WN AD A+
Sbjct: 173 LVAFCDGSALENGRRGCRAGYACIFPHNESWNVAKQLVEDRV---------TNNRAEYMAALEAMKRANIEDPEASRVLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMAEKGKRRVRWTHVKAHTGKKDWRSKWNDVADNAAR 320
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Match: A0A225VA59_9STRA (Ribonuclease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA59_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.550e-16 Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = -3
Query: 165 LVVFTDGSCIQSLGKACAATV---------WSDAQ--FDDQAFFLDPCSPRTSNRAEFLAAIIAGEH--------TKLFRFYTDSMLLVNSMTKWTSGWRRNSWKETDRTMIKNLDLIQTLDSQASERTTKITHVKAHTNGTDYNSYWNARADECAK 578
LV F DGS +Q+ + C A W+ A+ +D+A T+NRAE++AA+ A + ++L ++DSMLL+ SMT+W W++ +W ++D ++N DL++ L ++ +R + HVKAHT +D+ S WN AD A+
Sbjct: 10 LVAFCDGSALQNGRRKCQAGYACIFPHCEQWNVAKQLVEDRA---------TNNRAEYMAALEAMKRANIEDPDGSRLLYIFSDSMLLIRSMTEWVGTWQKKNWVKSDGAPVQNRDLLELLMAEKGDRRIRWIHVKAHTGKSDWRSKWNDVADNAAR 157 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1456.3289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1456.3289.1 >prot_E-fasciculatus_F_contig1456.3289.1 ID=prot_E-fasciculatus_F_contig1456.3289.1|Name=mRNA_E-fasciculatus_F_contig1456.3289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp MKEFKYRFSAHGIMVRLCAIDPFFVMDFFGEPGNYPFHFARFAKSLEYSLback to top mRNA from alignment at E-fasciculatus_F_contig1456:8883..10659+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1456.3289.1 ID=mRNA_E-fasciculatus_F_contig1456.3289.1|Name=mRNA_E-fasciculatus_F_contig1456.3289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1777bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1456:8883..10659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1456:8883..10659+ >mRNA_E-fasciculatus_F_contig1456.3289.1 ID=mRNA_E-fasciculatus_F_contig1456.3289.1|Name=mRNA_E-fasciculatus_F_contig1456.3289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1456:8883..10659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |