mRNA_E-fasciculatus_F_contig1456.3288.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1456.3288.1
Unique NamemRNA_E-fasciculatus_F_contig1456.3288.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1456.3288.1 vs. uniprot
Match: A0A6H5K143_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K143_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.640e-43
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   37 LLPMLERAWGRYKVEDVLLCENCARSQHTDLVKTFKARTEQYMLAELQRRMRELEDNFLSWDCPPPCATSTERADMLWDIGSTLLLVDVVETATHEDDRNRLMR 348
            + P+LER  GRYK+E V  C +C RS+H DL+K FK +TE ++LAELQRRM ELE+NFLSWDCP PCA STERADMLW IGSTLL V+V E ATHEDDR RLMR
Sbjct:  210 MFPILERGRGRYKIEWVNKCGSCVRSEHLDLLKRFKVKTEHFVLAELQRRMPELENNFLSWDCPLPCAISTERADMLWQIGSTLLHVEVDEIATHEDDRKRLMR 313
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BLAST of mRNA_E-fasciculatus_F_contig1456.3288.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.280e-40
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:   37 LLPMLERAWGRYKVEDVLLCENCARSQHTDLVKTFKARTEQYMLAELQRRMRELEDNFLSWDCPPPCATSTERADMLWDIGSTLLLVDVVETATHEDDRNRLMR 348
            L PM+ER  G Y+++D  LC +C RS+H DL K FK RTE ++LAELQRRM ELE NFLSWDCP P A STERADMLW IGS LL V+V ETATHEDDRNRLMR
Sbjct: 2119 LFPMIERGCGTYRIDDDFLCGSCLRSEHPDLAKKFKVRTEHFVLAELQRRMPELEGNFLSWDCPLPYAISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMR 2222
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1456.3288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K143_9PHAE7.640e-4370.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L073_9PHAE1.280e-4070.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1456contigE-fasciculatus_F_contig1456:8358..8705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.7356641-UTR-E-fasciculatus_F_contig1456:8357..84021622927941.7356641-UTR-E-fasciculatus_F_contig1456:8357..8402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1456 8358..8402 +
1695995759.9201715-UTR-E-fasciculatus_F_contig1456:8357..84021695995759.9201715-UTR-E-fasciculatus_F_contig1456:8357..8402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1456 8358..8402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.750524-CDS-E-fasciculatus_F_contig1456:8402..87051622927941.750524-CDS-E-fasciculatus_F_contig1456:8402..8705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1456 8403..8705 +
1695995759.9340603-CDS-E-fasciculatus_F_contig1456:8402..87051695995759.9340603-CDS-E-fasciculatus_F_contig1456:8402..8705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1456 8403..8705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1456.3288.1prot_E-fasciculatus_F_contig1456.3288.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1456 8403..8705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1456.3288.1

>prot_E-fasciculatus_F_contig1456.3288.1 ID=prot_E-fasciculatus_F_contig1456.3288.1|Name=mRNA_E-fasciculatus_F_contig1456.3288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MLERAWGRYKVEDVLLCENCARSQHTDLVKTFKARTEQYMLAELQRRMRE
LEDNFLSWDCPPPCATSTERADMLWDIGSTLLLVDVVETATHEDDRNRLM
R
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mRNA from alignment at E-fasciculatus_F_contig1456:8358..8705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1456.3288.1 ID=mRNA_E-fasciculatus_F_contig1456.3288.1|Name=mRNA_E-fasciculatus_F_contig1456.3288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1456:8358..8705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGAAGAGCACGCGGTGTAGATCATCGTATGTATCTTATTGCCGATGCT
CGAAAGGGCCTGGGGACGCTATAAAGTAGAAGACGTACTCCTATGCGAGA
ACTGTGCCCGTAGCCAGCACACCGATCTGGTGAAGACGTTCAAAGCACGG
ACCGAGCAATATATGTTGGCTGAGCTGCAAAGGCGTATGCGTGAGTTGGA
AGACAACTTCCTGTCGTGGGATTGCCCGCCGCCCTGTGCGACATCAACCG
AGAGAGCTGACATGCTGTGGGATATTGGATCAACTTTGCTGCTCGTCGAC
GTGGTCGAGACGGCGACACACGAGGACGACCGAAACAGGCTCATGCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1456:8358..8705+

>mRNA_E-fasciculatus_F_contig1456.3288.1 ID=mRNA_E-fasciculatus_F_contig1456.3288.1|Name=mRNA_E-fasciculatus_F_contig1456.3288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1456:8358..8705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCGAAAGGGCCTGGGGACGCTATAAAGTAGAAGACGTACTCCTATG
CGAGAACTGTGCCCGTAGCCAGCACACCGATCTGGTGAAGACGTTCAAAG
CACGGACCGAGCAATATATGTTGGCTGAGCTGCAAAGGCGTATGCGTGAG
TTGGAAGACAACTTCCTGTCGTGGGATTGCCCGCCGCCCTGTGCGACATC
AACCGAGAGAGCTGACATGCTGTGGGATATTGGATCAACTTTGCTGCTCG
TCGACGTGGTCGAGACGGCGACACACGAGGACGACCGAAACAGGCTCATG
CGCATGCTCGAAAGGGCCTGGGGACGCTATAAAGTAGAAGACGTACTCCT
ATGCGAGAACTGTGCCCGTAGCCAGCACACCGATCTGGTGAAGACGTTCA
AAGCACGGACCGAGCAATATATGTTGGCTGAGCTGCAAAGGCGTATGCGT
GAGTTGGAAGACAACTTCCTGTCGTGGGATTGCCCGCCGCCCTGTGCGAC
ATCAACCGAGAGAGCTGACATGCTGTGGGATATTGGATCAACTTTGCTGC
TCGTCGACGTGGTCGAGACGGCGACACACGAGGACGACCGAAACAGGCTC
ATGCGC
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