mRNA_E-fasciculatus_F_contig14541.3277.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14541.3277.1
Unique NamemRNA_E-fasciculatus_F_contig14541.3277.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.240e-52
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 EEFDRFMARFVDTSVEEYPMEELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEAVPARL 333
            +EFDRFMARF DT++ +YP+E LL+FWAG GQ LYPNMARAAR+LLSVPASSAVLERDFSTAGRLIT ARSRLSAAYVEMVLFLNGNQ+YIP+EVPKLSK+Q  EAVP RL
Sbjct:  690 QEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRL 800          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.670e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  100 LYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRL-SAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEAVPARL 333
            +YP +AR AR++   PAS+AVLERDFS AGR++T +R  + S  YVEM+LFL+GN   IP ++ KL++A A   +P RL
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRL 83          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.540e-18
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   61 EELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEAVPARL 333
            E++L +W       YP +AR AR++   PAS+AVLERDFS AGR++T +RS + + YVEM++FL+GN   IP ++ KL++A A   +P RL
Sbjct:  605 EDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRL 694          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.740e-16
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   61 EELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEAVPARL 333
            E++L +W       YP +AR AR+++   AS+AVLE DFS AGR++T +RS + + YVEM+LFL+GN   IP ++ KL++A A   +P RL
Sbjct:  378 EDVLKWWKMWAHA-YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRL 467          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.570e-16
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   37 TSVEEYPMEELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEAVPARL 333
            T  ++   E +L++W   G+ LYP +ARAAR++   PAS+AVLERDF+ A  ++  +RS   A YVEMVLFL+GN   IP ++P+L        +P RL
Sbjct:  537 TLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRL 634          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.370e-16
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   40 SVEEYPMEELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVP 288
            +++E   + +L +W     + YP +ARAAR++   PAS+AVLE DF  AGR++T +RS   A YVEM+LFL+GN   IP ++P
Sbjct:   28 TIDELSCDSVLKWWKRW-MSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIP 109          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 67.0 bits (162), Expect = 5.580e-12
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  124 ARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPL-EVPKLSKAQASEAVPARL 333
            AR++ S+P+SSA +ERDF TAGR++T  R+ L++  V+M  FLN N+ Y+ + + PK+S A ASE VP+ +
Sbjct:   11 ARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNIAQCPKVSAAAASERVPSNV 81          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-11
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    4 EFDRFMARFVDTSVEEYPMEELLDFWAGGGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGN 261
            E+D  ++ +++  V E    +LL++W    + ++P++AR AR +LS+PA+SA  ERDFSTAG +I+E RS+LS   V+ VLFL+ N
Sbjct:  150 EYDE-VSTYIELKVTEDDHFDLLNWWKEHSE-MFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.380e-11
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   10 DRFMARFVDTSVEEYPMEELLDFWAG----GGQTLYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPL-EVPKLSKAQASEAVPARL 333
            D+ + R++ T       + +L FW      G   L P +AR   +L S+P+SSA +ERDF TAGR++T  RS L+   V+M  FLN N+ Y+ + + PKLS   A E  P+ +
Sbjct:    7 DKQLDRWLTTPTS---FDLVLSFWKRQQEQGNFRLLPLVAR---VLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKLSPNTADERRPSNV 113          
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Match: A0A662WEP3_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEP3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.850e-11
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 EEFDRFMARFVDT-SVEEYPMEELLDFWAGGGQT-LYPNMARAARILLSVPASSAVLERDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPL-EVPKLSKAQASEAVPARL 333
            EEFDR++       +V E   E +L +W    +   +  +   AR++ S+PASSA +ERDF  AG+++   RS L+   ++M  FLN N+ Y  L + PKLS   ASE +P+ +
Sbjct:  448 EEFDRWITTPTSLRAVREGQFESVLSYWRRQSEEGTFRLLPLVARVVFSMPASSAQIERDFGVAGQMVVPHRSSLAPYNIDMATFLNCNRAYCDLTQCPKLSVETASEQIPSNM 561          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14541.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.240e-5282.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE3.670e-1851.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.540e-1847.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.740e-1646.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI2.570e-1644.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE5.370e-1645.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
H3GTQ6_PHYRM5.580e-1247.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI0019661A931.110e-1144.19zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A225UGF7_9STRA1.380e-1138.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A662WEP3_9STRA1.850e-1136.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14541contigE-fasciculatus_F_contig14541:391..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog164328.Phyra80540
EggNOG OGs299R4@1,2RGTA@2759,3QIGE@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927938.853104-CDS-E-fasciculatus_F_contig14541:390..7051622927938.853104-CDS-E-fasciculatus_F_contig14541:390..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14541 391..705 -
1695995759.244801-CDS-E-fasciculatus_F_contig14541:390..7051695995759.244801-CDS-E-fasciculatus_F_contig14541:390..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14541 391..705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927938.8633747-UTR-E-fasciculatus_F_contig14541:705..7231622927938.8633747-UTR-E-fasciculatus_F_contig14541:705..723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14541 706..723 -
1695995759.2651448-UTR-E-fasciculatus_F_contig14541:705..7231695995759.2651448-UTR-E-fasciculatus_F_contig14541:705..723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14541 706..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14541.3277.1prot_E-fasciculatus_F_contig14541.3277.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14541 391..705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14541.3277.1

>prot_E-fasciculatus_F_contig14541.3277.1 ID=prot_E-fasciculatus_F_contig14541.3277.1|Name=mRNA_E-fasciculatus_F_contig14541.3277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MARFVDTSVEEYPMEELLDFWAGGGQTLYPNMARAARILLSVPASSAVLE
RDFSTAGRLITEARSRLSAAYVEMVLFLNGNQQYIPLEVPKLSKAQASEA
VPARL
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mRNA from alignment at E-fasciculatus_F_contig14541:391..723-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14541.3277.1 ID=mRNA_E-fasciculatus_F_contig14541.3277.1|Name=mRNA_E-fasciculatus_F_contig14541.3277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14541:391..723- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGAGTTCGACCGCTTCATGGCGCGCTTCGTCGACACCAGCGTCGAGGA GTACCCGATGGAGGAGCTGCTGGATTTCTGGGCAGGTGGGGGGCAGACGC TCTACCCAAACATGGCCCGCGCCGCCAGGATACTGTTGTCGGTGCCAGCG TCTTCGGCGGTGCTCGAGAGGGACTTCAGCACAGCTGGGCGCCTCATCAC CGAGGCACGTAGCCGTCTCAGTGCGGCCTACGTGGAGATGGTGCTGTTCC TCAACGGCAACCAACAGTACATCCCGCTGGAGGTGCCTAAGCTGTCAAAG GCGCAGGCCAGTGAGGCGGTGCCAGCGCGGCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14541:391..723-

>mRNA_E-fasciculatus_F_contig14541.3277.1 ID=mRNA_E-fasciculatus_F_contig14541.3277.1|Name=mRNA_E-fasciculatus_F_contig14541.3277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14541:391..723- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCGCTTCGTCGACACCAGCGTCGAGGAGTACCCGATGGAGGAGCT
GCTGGATTTCTGGGCAGGTGGGGGGCAGACGCTCTACCCAAACATGGCCC
GCGCCGCCAGGATACTGTTGTCGGTGCCAGCGTCTTCGGCGGTGCTCGAG
AGGGACTTCAGCACAGCTGGGCGCCTCATCACCGAGGCACGTAGCCGTCT
CAGTGCGGCCTACGTGGAGATGGTGCTGTTCCTCAACGGCAACCAACAGT
ACATCCCGCTGGAGGTGCCTAAGCTGTCAAAGGCGCAGGCCAGTGAGGCG
GTGCCAGCGCGGCTCATGGCGCGCTTCGTCGACACCAGCGTCGAGGAGTA
CCCGATGGAGGAGCTGCTGGATTTCTGGGCAGGTGGGGGGCAGACGCTCT
ACCCAAACATGGCCCGCGCCGCCAGGATACTGTTGTCGGTGCCAGCGTCT
TCGGCGGTGCTCGAGAGGGACTTCAGCACAGCTGGGCGCCTCATCACCGA
GGCACGTAGCCGTCTCAGTGCGGCCTACGTGGAGATGGTGCTGTTCCTCA
ACGGCAACCAACAGTACATCCCGCTGGAGGTGCCTAAGCTGTCAAAGGCG
CAGGCCAGTGAGGCGGTGCCAGCGCGGCTC
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